Wall clock time and date at job start Mon Mar 30 2020 03:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47507 * 2 1 4 4 C 1.53007 * 109.47348 * 240.00116 * 2 1 3 5 5 N 1.46506 * 109.47464 * 120.00621 * 2 1 3 6 6 C 1.46756 * 124.34968 * 59.99055 * 5 2 1 7 7 C 1.54487 * 105.47255 * 162.96859 * 6 5 2 8 8 C 1.54626 * 101.76119 * 25.41844 * 7 6 5 9 9 H 1.09001 * 110.48509 * 216.52662 * 8 7 6 10 10 C 1.53000 * 110.48785 * 93.88224 * 8 7 6 11 11 C 1.50703 * 109.47219 * 175.00048 * 10 8 7 12 12 H 1.07990 * 119.99938 * 359.97438 * 11 10 8 13 13 C 1.37881 * 119.99813 * 179.97438 * 11 10 8 14 14 N 1.31517 * 120.00088 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46671 * 60.00390 * 15 13 11 17 17 H 1.48503 * 109.46991 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47340 * 300.00284 * 15 13 11 19 19 C 1.34415 * 124.34697 * 239.98003 * 5 2 1 20 20 O 1.21282 * 124.94478 * 0.45313 * 19 5 2 21 21 H 1.09000 * 109.46994 * 299.99961 * 1 2 3 22 22 H 1.08998 * 109.47218 * 60.00137 * 1 2 3 23 23 H 1.08998 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47569 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47252 * 300.00324 * 3 2 1 26 26 H 1.09000 * 109.46962 * 60.00019 * 3 2 1 27 27 H 1.09002 * 109.46680 * 300.00372 * 4 2 1 28 28 H 1.08998 * 109.47168 * 59.99716 * 4 2 1 29 29 H 1.08992 * 109.47748 * 180.02562 * 4 2 1 30 30 H 1.09002 * 110.24543 * 43.97622 * 6 5 2 31 31 H 1.08993 * 110.32355 * 282.00611 * 6 5 2 32 32 H 1.08996 * 110.96940 * 143.53836 * 7 6 5 33 33 H 1.08997 * 110.97180 * 267.30251 * 7 6 5 34 34 H 1.09000 * 109.47005 * 294.99587 * 10 8 7 35 35 H 1.08996 * 109.47085 * 54.99607 * 10 8 7 36 36 H 0.96998 * 120.00237 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0184 -0.6908 1.1961 6 6 1.7232 -2.0908 1.5224 7 6 2.7669 -2.4947 2.5874 8 6 3.1167 -1.1279 3.2201 9 1 4.1753 -1.0860 3.4766 10 6 2.2540 -0.8743 4.4580 11 6 2.6964 0.4023 5.1257 12 1 3.5115 0.9751 4.7091 13 6 2.0603 0.8388 6.2684 14 7 1.0672 0.1415 6.7755 15 14 2.6091 2.4208 7.0965 16 1 2.4598 3.5535 6.1478 17 1 1.7708 2.6676 8.2972 18 1 4.0323 2.2992 7.5023 19 6 2.7947 -0.1236 2.1355 20 8 3.1804 1.0261 2.1167 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9562 0.8900 27 1 1.6766 -1.7489 -1.2493 28 1 1.6767 -0.2074 -2.1393 29 1 3.1300 -0.7217 -1.2491 30 1 1.8286 -2.7152 0.6352 31 1 0.7157 -2.1805 1.9286 32 1 2.3302 -3.1664 3.3264 33 1 3.6439 -2.9454 2.1229 34 1 1.2091 -0.7855 4.1606 35 1 2.3642 -1.7056 5.1542 36 1 0.6199 0.4484 7.5796 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260206205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:17 Heat of formation + Delta-G solvation = -47.486254 kcal Electronic energy + Delta-G solvation = -16488.849238 eV Core-core repulsion = 13972.532352 eV Total energy + Delta-G solvation = -2516.316887 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19074 -36.20925 -35.54877 -32.92488 -30.58430 -28.26146 -27.22106 -27.07518 -25.53307 -22.45247 -21.74102 -19.78571 -17.97273 -16.39638 -15.97643 -15.37981 -14.65237 -14.32889 -13.91146 -13.77529 -13.57616 -12.83246 -12.59250 -12.40674 -12.10428 -11.93951 -11.73811 -11.51155 -11.45266 -11.20320 -11.15095 -10.91798 -10.77352 -10.65086 -10.42786 -10.11223 -9.41044 -9.06969 -8.49541 -8.22335 -8.12406 -5.93641 -3.93505 3.42185 3.44332 3.45836 3.50468 3.52130 4.55040 4.84465 5.06318 5.08530 5.21873 5.33183 5.36663 5.44363 5.61676 5.65108 5.72175 5.82907 5.84710 5.99062 6.01878 6.11977 6.16661 6.18906 6.35342 6.50386 6.56946 6.70398 6.83405 7.22502 7.57885 7.67699 7.81361 8.07080 8.45400 9.04041 9.14751 9.70392 11.17829 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033491 B = 0.008407 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.836679 B = 3329.690514 C = 3651.501847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.174 3.826 3 C -0.139 4.139 4 C -0.154 4.154 5 N -0.622 5.622 6 C 0.110 3.890 7 C -0.133 4.133 8 C -0.115 4.115 9 H 0.090 0.910 10 C 0.043 3.957 11 C -0.512 4.512 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.901 5.901 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.535 3.465 20 O -0.522 6.522 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.018 0.982 35 H 0.028 0.972 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 -5.241 -13.967 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.090 3.910 3 C -0.197 4.197 4 C -0.212 4.212 5 N -0.358 5.358 6 C -0.013 4.013 7 C -0.171 4.171 8 C -0.137 4.137 9 H 0.109 0.891 10 C 0.006 3.994 11 C -0.551 4.551 12 H 0.082 0.918 13 C -0.144 4.144 14 N -0.541 5.541 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.202 1.202 19 C 0.325 3.675 20 O -0.397 6.397 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.036 0.964 35 H 0.046 0.954 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.232 -4.572 -13.895 14.629 hybrid contribution 0.055 0.740 0.513 0.902 sum -0.177 -3.832 -13.382 13.921 Atomic orbital electron populations 1.22182 0.94875 1.02007 1.02394 1.20325 0.93530 0.93058 0.84110 1.22075 1.02362 0.93487 1.01742 1.22166 1.01563 1.00460 0.97021 1.48417 1.52235 1.12622 1.22530 1.21879 0.99344 0.82107 0.97991 1.22705 0.98328 0.98259 0.97810 1.22192 1.03217 0.91532 0.96713 0.89138 1.18983 0.93857 0.97618 0.88968 1.21269 1.17455 1.07239 1.09102 0.91848 1.24973 0.95052 0.97142 0.97234 1.69951 1.22978 1.38987 1.22193 0.86638 0.78538 0.84163 0.78605 1.20211 1.21470 1.20232 1.20961 0.76602 0.88146 0.81829 1.90629 1.54806 1.17732 1.76567 0.91861 0.91937 0.92546 0.91460 0.93218 0.90833 0.92539 0.91822 0.92386 0.91658 0.91682 0.89507 0.91325 0.96395 0.95377 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 8.54 37.16 0.32 -1.74 16 2 C 0.17 2.56 1.20 -131.82 -0.16 2.40 16 3 C -0.14 -2.26 7.00 37.15 0.26 -2.00 16 4 C -0.15 -1.78 8.49 37.16 0.32 -1.46 16 5 N -0.62 -10.70 2.76 -157.58 -0.43 -11.14 16 6 C 0.11 1.59 6.60 -3.12 -0.02 1.57 16 7 C -0.13 -2.05 6.71 -25.10 -0.17 -2.22 16 8 C -0.11 -2.39 2.88 -90.63 -0.26 -2.65 16 9 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 10 C 0.04 1.10 4.38 -27.88 -0.12 0.98 16 11 C -0.51 -15.00 8.61 -34.44 -0.30 -15.30 16 12 H 0.06 1.90 7.36 -52.49 -0.39 1.52 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 15 Si 0.89 22.87 29.54 -169.99 -5.02 17.85 16 16 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 C 0.54 11.51 6.87 -10.86 -0.07 11.43 16 20 O -0.52 -12.91 13.41 5.56 0.07 -12.83 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 24 H 0.07 1.19 7.08 -51.93 -0.37 0.82 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.42 7.06 -51.93 -0.37 1.06 16 27 H 0.06 0.58 7.21 -51.93 -0.37 0.21 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.75 7.12 -51.93 -0.37 0.38 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.28 7.87 -51.93 -0.41 0.87 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 288.33 15.07 4.35 4.35 Total: -1.00 -32.66 288.33 -6.65 -39.31 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -6.04 Total: -3.45 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.31 Total: -7.41 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.30 Total: -37.81 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.07 Total: -12.83 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.66 -6.65 -39.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.176 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds