Wall clock time and date at job start Mon Mar 30 2020 03:55:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52993 * 109.47507 * 2 1
4 4 C 1.53007 * 109.47348 * 240.00116 * 2 1 3
5 5 N 1.46506 * 109.47464 * 120.00621 * 2 1 3
6 6 C 1.46756 * 124.34968 * 59.99055 * 5 2 1
7 7 C 1.54487 * 105.47255 * 162.96859 * 6 5 2
8 8 C 1.54626 * 101.76119 * 25.41844 * 7 6 5
9 9 H 1.09001 * 110.48509 * 216.52662 * 8 7 6
10 10 C 1.53000 * 110.48785 * 93.88224 * 8 7 6
11 11 C 1.50703 * 109.47219 * 175.00048 * 10 8 7
12 12 H 1.07990 * 119.99938 * 359.97438 * 11 10 8
13 13 C 1.37881 * 119.99813 * 179.97438 * 11 10 8
14 14 N 1.31517 * 120.00088 * 359.97438 * 13 11 10
15 15 Si 1.86800 * 119.99899 * 179.97438 * 13 11 10
16 16 H 1.48503 * 109.46671 * 60.00390 * 15 13 11
17 17 H 1.48503 * 109.46991 * 179.97438 * 15 13 11
18 18 H 1.48497 * 109.47340 * 300.00284 * 15 13 11
19 19 C 1.34415 * 124.34697 * 239.98003 * 5 2 1
20 20 O 1.21282 * 124.94478 * 0.45313 * 19 5 2
21 21 H 1.09000 * 109.46994 * 299.99961 * 1 2 3
22 22 H 1.08998 * 109.47218 * 60.00137 * 1 2 3
23 23 H 1.08998 * 109.47190 * 179.97438 * 1 2 3
24 24 H 1.09000 * 109.47569 * 179.97438 * 3 2 1
25 25 H 1.09000 * 109.47252 * 300.00324 * 3 2 1
26 26 H 1.09000 * 109.46962 * 60.00019 * 3 2 1
27 27 H 1.09002 * 109.46680 * 300.00372 * 4 2 1
28 28 H 1.08998 * 109.47168 * 59.99716 * 4 2 1
29 29 H 1.08992 * 109.47748 * 180.02562 * 4 2 1
30 30 H 1.09002 * 110.24543 * 43.97622 * 6 5 2
31 31 H 1.08993 * 110.32355 * 282.00611 * 6 5 2
32 32 H 1.08996 * 110.96940 * 143.53836 * 7 6 5
33 33 H 1.08997 * 110.97180 * 267.30251 * 7 6 5
34 34 H 1.09000 * 109.47005 * 294.99587 * 10 8 7
35 35 H 1.08996 * 109.47085 * 54.99607 * 10 8 7
36 36 H 0.96998 * 120.00237 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0401 -0.7212 -1.2493
5 7 2.0184 -0.6908 1.1961
6 6 1.7232 -2.0908 1.5224
7 6 2.7669 -2.4947 2.5874
8 6 3.1167 -1.1279 3.2201
9 1 4.1753 -1.0860 3.4766
10 6 2.2540 -0.8743 4.4580
11 6 2.6964 0.4023 5.1257
12 1 3.5115 0.9751 4.7091
13 6 2.0603 0.8388 6.2684
14 7 1.0672 0.1415 6.7755
15 14 2.6091 2.4208 7.0965
16 1 2.4598 3.5535 6.1478
17 1 1.7708 2.6676 8.2972
18 1 4.0323 2.2992 7.5023
19 6 2.7947 -0.1236 2.1355
20 8 3.1804 1.0261 2.1167
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 -0.0005
24 1 3.1300 1.4424 0.0005
25 1 1.6767 1.9563 -0.8899
26 1 1.6767 1.9562 0.8900
27 1 1.6766 -1.7489 -1.2493
28 1 1.6767 -0.2074 -2.1393
29 1 3.1300 -0.7217 -1.2491
30 1 1.8286 -2.7152 0.6352
31 1 0.7157 -2.1805 1.9286
32 1 2.3302 -3.1664 3.3264
33 1 3.6439 -2.9454 2.1229
34 1 1.2091 -0.7855 4.1606
35 1 2.3642 -1.7056 5.1542
36 1 0.6199 0.4484 7.5796
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260206205.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:55:17
Heat of formation + Delta-G solvation = -47.486254 kcal
Electronic energy + Delta-G solvation = -16488.849238 eV
Core-core repulsion = 13972.532352 eV
Total energy + Delta-G solvation = -2516.316887 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.19074 -36.20925 -35.54877 -32.92488 -30.58430 -28.26146 -27.22106 -27.07518
-25.53307 -22.45247 -21.74102 -19.78571 -17.97273 -16.39638 -15.97643 -15.37981
-14.65237 -14.32889 -13.91146 -13.77529 -13.57616 -12.83246 -12.59250 -12.40674
-12.10428 -11.93951 -11.73811 -11.51155 -11.45266 -11.20320 -11.15095 -10.91798
-10.77352 -10.65086 -10.42786 -10.11223 -9.41044 -9.06969 -8.49541 -8.22335
-8.12406 -5.93641 -3.93505 3.42185 3.44332 3.45836 3.50468 3.52130
4.55040 4.84465 5.06318 5.08530 5.21873 5.33183 5.36663 5.44363
5.61676 5.65108 5.72175 5.82907 5.84710 5.99062 6.01878 6.11977
6.16661 6.18906 6.35342 6.50386 6.56946 6.70398 6.83405 7.22502
7.57885 7.67699 7.81361 8.07080 8.45400 9.04041 9.14751 9.70392
11.17829
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.033491 B = 0.008407 C = 0.007666
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 835.836679 B = 3329.690514 C = 3651.501847
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.174 3.826
3 C -0.139 4.139
4 C -0.154 4.154
5 N -0.622 5.622
6 C 0.110 3.890
7 C -0.133 4.133
8 C -0.115 4.115
9 H 0.090 0.910
10 C 0.043 3.957
11 C -0.512 4.512
12 H 0.063 0.937
13 C 0.056 3.944
14 N -0.901 5.901
15 Si 0.892 3.108
16 H -0.277 1.277
17 H -0.289 1.289
18 H -0.277 1.277
19 C 0.535 3.465
20 O -0.522 6.522
21 H 0.062 0.938
22 H 0.062 0.938
23 H 0.055 0.945
24 H 0.066 0.934
25 H 0.049 0.951
26 H 0.073 0.927
27 H 0.056 0.944
28 H 0.063 0.937
29 H 0.057 0.943
30 H 0.065 0.935
31 H 0.065 0.935
32 H 0.086 0.914
33 H 0.068 0.932
34 H 0.018 0.982
35 H 0.028 0.972
36 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.292 -5.241 -13.967 14.921
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.090 3.910
3 C -0.197 4.197
4 C -0.212 4.212
5 N -0.358 5.358
6 C -0.013 4.013
7 C -0.171 4.171
8 C -0.137 4.137
9 H 0.109 0.891
10 C 0.006 3.994
11 C -0.551 4.551
12 H 0.082 0.918
13 C -0.144 4.144
14 N -0.541 5.541
15 Si 0.721 3.279
16 H -0.202 1.202
17 H -0.215 1.215
18 H -0.202 1.202
19 C 0.325 3.675
20 O -0.397 6.397
21 H 0.081 0.919
22 H 0.081 0.919
23 H 0.075 0.925
24 H 0.085 0.915
25 H 0.068 0.932
26 H 0.092 0.908
27 H 0.075 0.925
28 H 0.082 0.918
29 H 0.076 0.924
30 H 0.083 0.917
31 H 0.083 0.917
32 H 0.105 0.895
33 H 0.087 0.913
34 H 0.036 0.964
35 H 0.046 0.954
36 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -0.232 -4.572 -13.895 14.629
hybrid contribution 0.055 0.740 0.513 0.902
sum -0.177 -3.832 -13.382 13.921
Atomic orbital electron populations
1.22182 0.94875 1.02007 1.02394 1.20325 0.93530 0.93058 0.84110
1.22075 1.02362 0.93487 1.01742 1.22166 1.01563 1.00460 0.97021
1.48417 1.52235 1.12622 1.22530 1.21879 0.99344 0.82107 0.97991
1.22705 0.98328 0.98259 0.97810 1.22192 1.03217 0.91532 0.96713
0.89138 1.18983 0.93857 0.97618 0.88968 1.21269 1.17455 1.07239
1.09102 0.91848 1.24973 0.95052 0.97142 0.97234 1.69951 1.22978
1.38987 1.22193 0.86638 0.78538 0.84163 0.78605 1.20211 1.21470
1.20232 1.20961 0.76602 0.88146 0.81829 1.90629 1.54806 1.17732
1.76567 0.91861 0.91937 0.92546 0.91460 0.93218 0.90833 0.92539
0.91822 0.92386 0.91658 0.91682 0.89507 0.91325 0.96395 0.95377
0.93100
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.05 8.54 37.16 0.32 -1.74 16
2 C 0.17 2.56 1.20 -131.82 -0.16 2.40 16
3 C -0.14 -2.26 7.00 37.15 0.26 -2.00 16
4 C -0.15 -1.78 8.49 37.16 0.32 -1.46 16
5 N -0.62 -10.70 2.76 -157.58 -0.43 -11.14 16
6 C 0.11 1.59 6.60 -3.12 -0.02 1.57 16
7 C -0.13 -2.05 6.71 -25.10 -0.17 -2.22 16
8 C -0.11 -2.39 2.88 -90.63 -0.26 -2.65 16
9 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16
10 C 0.04 1.10 4.38 -27.88 -0.12 0.98 16
11 C -0.51 -15.00 8.61 -34.44 -0.30 -15.30 16
12 H 0.06 1.90 7.36 -52.49 -0.39 1.52 16
13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
14 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16
15 Si 0.89 22.87 29.54 -169.99 -5.02 17.85 16
16 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16
17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
19 C 0.54 11.51 6.87 -10.86 -0.07 11.43 16
20 O -0.52 -12.91 13.41 5.56 0.07 -12.83 16
21 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16
22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
23 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16
24 H 0.07 1.19 7.08 -51.93 -0.37 0.82 16
25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
26 H 0.07 1.42 7.06 -51.93 -0.37 1.06 16
27 H 0.06 0.58 7.21 -51.93 -0.37 0.21 16
28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
30 H 0.07 0.75 7.12 -51.93 -0.37 0.38 16
31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
32 H 0.09 1.28 7.87 -51.93 -0.41 0.87 16
33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
34 H 0.02 0.49 8.12 -51.93 -0.42 0.07 16
35 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16
36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
LS Contribution 288.33 15.07 4.35 4.35
Total: -1.00 -32.66 288.33 -6.65 -39.31
By element:
Atomic # 1 Polarization: 2.59 SS G_CDS: -6.04 Total: -3.45 kcal
Atomic # 6 Polarization: -7.10 SS G_CDS: -0.31 Total: -7.41 kcal
Atomic # 7 Polarization: -38.12 SS G_CDS: 0.30 Total: -37.81 kcal
Atomic # 8 Polarization: -12.91 SS G_CDS: 0.07 Total: -12.83 kcal
Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -32.66 -6.65 -39.31 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260206205.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.176 kcal
(2) G-P(sol) polarization free energy of solvation -32.661 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.837 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.486 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds