Wall clock time and date at job start Mon Mar 30 2020 03:55:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52993 * 109.47507 * 2 1
4 4 C 1.53007 * 109.47348 * 240.00116 * 2 1 3
5 5 N 1.46506 * 109.47464 * 120.00621 * 2 1 3
6 6 C 1.46756 * 124.34968 * 59.99055 * 5 2 1
7 7 C 1.54487 * 105.47255 * 162.96859 * 6 5 2
8 8 C 1.54626 * 101.76119 * 25.41844 * 7 6 5
9 9 H 1.09001 * 110.48509 * 216.52662 * 8 7 6
10 10 C 1.53000 * 110.48785 * 93.88224 * 8 7 6
11 11 C 1.50703 * 109.47219 * 175.00048 * 10 8 7
12 12 H 1.07990 * 119.99938 * 359.97438 * 11 10 8
13 13 C 1.37881 * 119.99813 * 179.97438 * 11 10 8
14 14 N 1.31517 * 120.00088 * 359.97438 * 13 11 10
15 15 Si 1.86800 * 119.99899 * 179.97438 * 13 11 10
16 16 H 1.48503 * 109.46671 * 60.00390 * 15 13 11
17 17 H 1.48503 * 109.46991 * 179.97438 * 15 13 11
18 18 H 1.48497 * 109.47340 * 300.00284 * 15 13 11
19 19 C 1.34415 * 124.34697 * 239.98003 * 5 2 1
20 20 O 1.21282 * 124.94478 * 0.45313 * 19 5 2
21 21 H 1.09000 * 109.46994 * 299.99961 * 1 2 3
22 22 H 1.08998 * 109.47218 * 60.00137 * 1 2 3
23 23 H 1.08998 * 109.47190 * 179.97438 * 1 2 3
24 24 H 1.09000 * 109.47569 * 179.97438 * 3 2 1
25 25 H 1.09000 * 109.47252 * 300.00324 * 3 2 1
26 26 H 1.09000 * 109.46962 * 60.00019 * 3 2 1
27 27 H 1.09002 * 109.46680 * 300.00372 * 4 2 1
28 28 H 1.08998 * 109.47168 * 59.99716 * 4 2 1
29 29 H 1.08992 * 109.47748 * 180.02562 * 4 2 1
30 30 H 1.09002 * 110.24543 * 43.97622 * 6 5 2
31 31 H 1.08993 * 110.32355 * 282.00611 * 6 5 2
32 32 H 1.08996 * 110.96940 * 143.53836 * 7 6 5
33 33 H 1.08997 * 110.97180 * 267.30251 * 7 6 5
34 34 H 1.09000 * 109.47005 * 294.99587 * 10 8 7
35 35 H 1.08996 * 109.47085 * 54.99607 * 10 8 7
36 36 H 0.96998 * 120.00237 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0401 -0.7212 -1.2493
5 7 2.0184 -0.6908 1.1961
6 6 1.7232 -2.0908 1.5224
7 6 2.7669 -2.4947 2.5874
8 6 3.1167 -1.1279 3.2201
9 1 4.1753 -1.0860 3.4766
10 6 2.2540 -0.8743 4.4580
11 6 2.6964 0.4023 5.1257
12 1 3.5115 0.9751 4.7091
13 6 2.0603 0.8388 6.2684
14 7 1.0672 0.1415 6.7755
15 14 2.6091 2.4208 7.0965
16 1 2.4598 3.5535 6.1478
17 1 1.7708 2.6676 8.2972
18 1 4.0323 2.2992 7.5023
19 6 2.7947 -0.1236 2.1355
20 8 3.1804 1.0261 2.1167
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 -0.0005
24 1 3.1300 1.4424 0.0005
25 1 1.6767 1.9563 -0.8899
26 1 1.6767 1.9562 0.8900
27 1 1.6766 -1.7489 -1.2493
28 1 1.6767 -0.2074 -2.1393
29 1 3.1300 -0.7217 -1.2491
30 1 1.8286 -2.7152 0.6352
31 1 0.7157 -2.1805 1.9286
32 1 2.3302 -3.1664 3.3264
33 1 3.6439 -2.9454 2.1229
34 1 1.2091 -0.7855 4.1606
35 1 2.3642 -1.7056 5.1542
36 1 0.6199 0.4484 7.5796
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260206205.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:55:16
Heat of formation + Delta-G solvation = -68.257200 kcal
Electronic energy + Delta-G solvation = -16489.749934 eV
Core-core repulsion = 13972.532352 eV
Total energy + Delta-G solvation = -2517.217582 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-41.65553 -37.62988 -37.10145 -35.02226 -32.31080 -29.78429 -28.40636 -28.18290
-27.28279 -24.44969 -23.01883 -21.30494 -19.44063 -18.51043 -17.37349 -17.00811
-16.35207 -16.07610 -15.26646 -15.10564 -14.74207 -14.43036 -14.36201 -13.85351
-13.54842 -13.33673 -13.29108 -12.91079 -12.86399 -12.66376 -12.62984 -12.53071
-12.29525 -12.10542 -12.00577 -11.78707 -11.40825 -11.07170 -10.62001 -10.06909
-9.48575 -8.22112 -6.28853 1.33307 1.36944 1.45139 1.83975 2.17162
2.39152 3.11161 3.58864 3.74758 3.97407 4.01306 4.12682 4.15031
4.34642 4.60691 4.69038 4.71798 4.76846 4.81991 4.87194 4.88313
4.95919 4.98273 5.10177 5.18802 5.26731 5.34771 5.43005 5.43912
5.57797 5.77349 5.93604 6.21524 6.36369 6.83736 7.38100 7.46917
8.88875
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.033491 B = 0.008407 C = 0.007666
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 835.836679 B = 3329.690514 C = 3651.501847
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.161 3.839
3 C -0.134 4.134
4 C -0.144 4.144
5 N -0.614 5.614
6 C 0.106 3.894
7 C -0.120 4.120
8 C -0.120 4.120
9 H 0.081 0.919
10 C 0.054 3.946
11 C -0.533 4.533
12 H 0.046 0.954
13 C 0.006 3.994
14 N -0.928 5.928
15 Si 0.952 3.048
16 H -0.282 1.282
17 H -0.274 1.274
18 H -0.266 1.266
19 C 0.521 3.479
20 O -0.570 6.570
21 H 0.029 0.971
22 H 0.090 0.910
23 H 0.075 0.925
24 H 0.045 0.955
25 H 0.082 0.918
26 H 0.029 0.971
27 H 0.077 0.923
28 H 0.087 0.913
29 H 0.049 0.951
30 H 0.112 0.888
31 H 0.064 0.936
32 H 0.094 0.906
33 H 0.101 0.899
34 H -0.007 1.007
35 H 0.017 0.983
36 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.621 -6.534 -15.884 17.187
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.078 3.922
3 C -0.191 4.191
4 C -0.202 4.202
5 N -0.349 5.349
6 C -0.016 4.016
7 C -0.157 4.157
8 C -0.142 4.142
9 H 0.100 0.900
10 C 0.017 3.983
11 C -0.571 4.571
12 H 0.065 0.935
13 C -0.192 4.192
14 N -0.569 5.569
15 Si 0.777 3.223
16 H -0.208 1.208
17 H -0.199 1.199
18 H -0.191 1.191
19 C 0.310 3.690
20 O -0.449 6.449
21 H 0.048 0.952
22 H 0.109 0.891
23 H 0.094 0.906
24 H 0.064 0.936
25 H 0.101 0.899
26 H 0.048 0.952
27 H 0.096 0.904
28 H 0.106 0.894
29 H 0.068 0.932
30 H 0.130 0.870
31 H 0.083 0.917
32 H 0.113 0.887
33 H 0.119 0.881
34 H 0.011 0.989
35 H 0.035 0.965
36 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -0.582 -5.908 -15.836 16.912
hybrid contribution 0.129 1.148 1.080 1.582
sum -0.453 -4.760 -14.756 15.511
Atomic orbital electron populations
1.22148 0.93386 1.03182 1.02178 1.20691 0.94673 0.92212 0.84588
1.21978 1.00947 0.95061 1.01123 1.22086 1.01046 1.01435 0.95590
1.48552 1.50415 1.13703 1.22240 1.22153 0.98897 0.80928 0.99618
1.22702 1.00011 0.95020 0.97994 1.22060 1.01662 0.95288 0.95186
0.90047 1.18745 0.93191 0.95669 0.90729 1.21584 1.17209 1.08666
1.09669 0.93522 1.25770 0.95174 1.00346 0.97918 1.70036 1.23733
1.40445 1.22663 0.85699 0.78871 0.79909 0.77772 1.20800 1.19924
1.19059 1.21125 0.77352 0.87624 0.82883 1.90596 1.56939 1.19537
1.77839 0.95151 0.89111 0.90637 0.93573 0.89922 0.95185 0.90386
0.89380 0.93183 0.87026 0.91730 0.88726 0.88064 0.98875 0.96507
0.92751
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.60 8.54 71.98 0.61 -2.99 16
2 C 0.16 4.43 1.20 3.60 0.00 4.44 16
3 C -0.13 -4.34 7.00 71.98 0.50 -3.84 16
4 C -0.14 -2.72 8.49 71.98 0.61 -2.11 16
5 N -0.61 -20.47 2.76 -771.05 -2.13 -22.60 16
6 C 0.11 2.75 6.60 86.84 0.57 3.32 16
7 C -0.12 -3.42 6.71 31.65 0.21 -3.21 16
8 C -0.12 -5.08 2.88 -10.80 -0.03 -5.11 16
9 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16
10 C 0.05 2.87 4.38 29.85 0.13 3.00 16
11 C -0.53 -32.39 8.61 25.60 0.22 -32.17 16
12 H 0.05 2.93 7.36 -2.92 -0.02 2.91 16
13 C 0.01 0.34 5.46 84.66 0.46 0.80 16
14 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16
15 Si 0.95 47.82 29.54 68.60 2.03 49.85 16
16 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16
17 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16
18 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16
19 C 0.52 22.93 6.87 87.90 0.60 23.53 16
20 O -0.57 -29.69 13.41 -3.03 -0.04 -29.73 16
21 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16
22 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16
23 H 0.07 1.51 7.90 -2.39 -0.02 1.50 16
24 H 0.05 1.66 7.08 -2.39 -0.02 1.65 16
25 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
26 H 0.03 1.21 7.06 -2.39 -0.02 1.19 16
27 H 0.08 1.17 7.21 -2.39 -0.02 1.16 16
28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16
30 H 0.11 1.95 7.12 -2.39 -0.02 1.93 16
31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
32 H 0.09 2.58 7.87 -2.39 -0.02 2.56 16
33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16
34 H -0.01 -0.41 8.12 -2.39 -0.02 -0.43 16
35 H 0.02 0.91 8.10 -2.39 -0.02 0.89 16
36 H 0.26 15.39 8.31 -92.71 -0.77 14.61 16
Total: -1.00 -74.89 288.33 5.08 -69.81
By element:
Atomic # 1 Polarization: 3.19 SS G_CDS: 1.03 Total: 4.21 kcal
Atomic # 6 Polarization: -18.24 SS G_CDS: 3.91 Total: -14.33 kcal
Atomic # 7 Polarization: -77.97 SS G_CDS: -1.84 Total: -79.81 kcal
Atomic # 8 Polarization: -29.69 SS G_CDS: -0.04 Total: -29.73 kcal
Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal
Total: -74.89 5.08 -69.81 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260206205.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.551 kcal
(2) G-P(sol) polarization free energy of solvation -74.886 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.335 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.808 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.257 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds