Wall clock time and date at job start Mon Mar 30 2020 03:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47507 * 2 1 4 4 C 1.53007 * 109.47348 * 240.00116 * 2 1 3 5 5 N 1.46506 * 109.47464 * 120.00621 * 2 1 3 6 6 C 1.46756 * 124.34968 * 59.99055 * 5 2 1 7 7 C 1.54487 * 105.47255 * 162.96859 * 6 5 2 8 8 C 1.54626 * 101.76119 * 25.41844 * 7 6 5 9 9 H 1.09001 * 110.48509 * 216.52662 * 8 7 6 10 10 C 1.53000 * 110.48785 * 93.88224 * 8 7 6 11 11 C 1.50703 * 109.47219 * 175.00048 * 10 8 7 12 12 H 1.07990 * 119.99938 * 359.97438 * 11 10 8 13 13 C 1.37881 * 119.99813 * 179.97438 * 11 10 8 14 14 N 1.31517 * 120.00088 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46671 * 60.00390 * 15 13 11 17 17 H 1.48503 * 109.46991 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47340 * 300.00284 * 15 13 11 19 19 C 1.34415 * 124.34697 * 239.98003 * 5 2 1 20 20 O 1.21282 * 124.94478 * 0.45313 * 19 5 2 21 21 H 1.09000 * 109.46994 * 299.99961 * 1 2 3 22 22 H 1.08998 * 109.47218 * 60.00137 * 1 2 3 23 23 H 1.08998 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47569 * 179.97438 * 3 2 1 25 25 H 1.09000 * 109.47252 * 300.00324 * 3 2 1 26 26 H 1.09000 * 109.46962 * 60.00019 * 3 2 1 27 27 H 1.09002 * 109.46680 * 300.00372 * 4 2 1 28 28 H 1.08998 * 109.47168 * 59.99716 * 4 2 1 29 29 H 1.08992 * 109.47748 * 180.02562 * 4 2 1 30 30 H 1.09002 * 110.24543 * 43.97622 * 6 5 2 31 31 H 1.08993 * 110.32355 * 282.00611 * 6 5 2 32 32 H 1.08996 * 110.96940 * 143.53836 * 7 6 5 33 33 H 1.08997 * 110.97180 * 267.30251 * 7 6 5 34 34 H 1.09000 * 109.47005 * 294.99587 * 10 8 7 35 35 H 1.08996 * 109.47085 * 54.99607 * 10 8 7 36 36 H 0.96998 * 120.00237 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0184 -0.6908 1.1961 6 6 1.7232 -2.0908 1.5224 7 6 2.7669 -2.4947 2.5874 8 6 3.1167 -1.1279 3.2201 9 1 4.1753 -1.0860 3.4766 10 6 2.2540 -0.8743 4.4580 11 6 2.6964 0.4023 5.1257 12 1 3.5115 0.9751 4.7091 13 6 2.0603 0.8388 6.2684 14 7 1.0672 0.1415 6.7755 15 14 2.6091 2.4208 7.0965 16 1 2.4598 3.5535 6.1478 17 1 1.7708 2.6676 8.2972 18 1 4.0323 2.2992 7.5023 19 6 2.7947 -0.1236 2.1355 20 8 3.1804 1.0261 2.1167 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6767 1.9562 0.8900 27 1 1.6766 -1.7489 -1.2493 28 1 1.6767 -0.2074 -2.1393 29 1 3.1300 -0.7217 -1.2491 30 1 1.8286 -2.7152 0.6352 31 1 0.7157 -2.1805 1.9286 32 1 2.3302 -3.1664 3.3264 33 1 3.6439 -2.9454 2.1229 34 1 1.2091 -0.7855 4.1606 35 1 2.3642 -1.7056 5.1542 36 1 0.6199 0.4484 7.5796 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260206205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:16 Heat of formation + Delta-G solvation = -68.257200 kcal Electronic energy + Delta-G solvation = -16489.749934 eV Core-core repulsion = 13972.532352 eV Total energy + Delta-G solvation = -2517.217582 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.65553 -37.62988 -37.10145 -35.02226 -32.31080 -29.78429 -28.40636 -28.18290 -27.28279 -24.44969 -23.01883 -21.30494 -19.44063 -18.51043 -17.37349 -17.00811 -16.35207 -16.07610 -15.26646 -15.10564 -14.74207 -14.43036 -14.36201 -13.85351 -13.54842 -13.33673 -13.29108 -12.91079 -12.86399 -12.66376 -12.62984 -12.53071 -12.29525 -12.10542 -12.00577 -11.78707 -11.40825 -11.07170 -10.62001 -10.06909 -9.48575 -8.22112 -6.28853 1.33307 1.36944 1.45139 1.83975 2.17162 2.39152 3.11161 3.58864 3.74758 3.97407 4.01306 4.12682 4.15031 4.34642 4.60691 4.69038 4.71798 4.76846 4.81991 4.87194 4.88313 4.95919 4.98273 5.10177 5.18802 5.26731 5.34771 5.43005 5.43912 5.57797 5.77349 5.93604 6.21524 6.36369 6.83736 7.38100 7.46917 8.88875 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033491 B = 0.008407 C = 0.007666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.836679 B = 3329.690514 C = 3651.501847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.161 3.839 3 C -0.134 4.134 4 C -0.144 4.144 5 N -0.614 5.614 6 C 0.106 3.894 7 C -0.120 4.120 8 C -0.120 4.120 9 H 0.081 0.919 10 C 0.054 3.946 11 C -0.533 4.533 12 H 0.046 0.954 13 C 0.006 3.994 14 N -0.928 5.928 15 Si 0.952 3.048 16 H -0.282 1.282 17 H -0.274 1.274 18 H -0.266 1.266 19 C 0.521 3.479 20 O -0.570 6.570 21 H 0.029 0.971 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.029 0.971 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.101 0.899 34 H -0.007 1.007 35 H 0.017 0.983 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 -6.534 -15.884 17.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.078 3.922 3 C -0.191 4.191 4 C -0.202 4.202 5 N -0.349 5.349 6 C -0.016 4.016 7 C -0.157 4.157 8 C -0.142 4.142 9 H 0.100 0.900 10 C 0.017 3.983 11 C -0.571 4.571 12 H 0.065 0.935 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.777 3.223 16 H -0.208 1.208 17 H -0.199 1.199 18 H -0.191 1.191 19 C 0.310 3.690 20 O -0.449 6.449 21 H 0.048 0.952 22 H 0.109 0.891 23 H 0.094 0.906 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.011 0.989 35 H 0.035 0.965 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.582 -5.908 -15.836 16.912 hybrid contribution 0.129 1.148 1.080 1.582 sum -0.453 -4.760 -14.756 15.511 Atomic orbital electron populations 1.22148 0.93386 1.03182 1.02178 1.20691 0.94673 0.92212 0.84588 1.21978 1.00947 0.95061 1.01123 1.22086 1.01046 1.01435 0.95590 1.48552 1.50415 1.13703 1.22240 1.22153 0.98897 0.80928 0.99618 1.22702 1.00011 0.95020 0.97994 1.22060 1.01662 0.95288 0.95186 0.90047 1.18745 0.93191 0.95669 0.90729 1.21584 1.17209 1.08666 1.09669 0.93522 1.25770 0.95174 1.00346 0.97918 1.70036 1.23733 1.40445 1.22663 0.85699 0.78871 0.79909 0.77772 1.20800 1.19924 1.19059 1.21125 0.77352 0.87624 0.82883 1.90596 1.56939 1.19537 1.77839 0.95151 0.89111 0.90637 0.93573 0.89922 0.95185 0.90386 0.89380 0.93183 0.87026 0.91730 0.88726 0.88064 0.98875 0.96507 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.54 71.98 0.61 -2.99 16 2 C 0.16 4.43 1.20 3.60 0.00 4.44 16 3 C -0.13 -4.34 7.00 71.98 0.50 -3.84 16 4 C -0.14 -2.72 8.49 71.98 0.61 -2.11 16 5 N -0.61 -20.47 2.76 -771.05 -2.13 -22.60 16 6 C 0.11 2.75 6.60 86.84 0.57 3.32 16 7 C -0.12 -3.42 6.71 31.65 0.21 -3.21 16 8 C -0.12 -5.08 2.88 -10.80 -0.03 -5.11 16 9 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 10 C 0.05 2.87 4.38 29.85 0.13 3.00 16 11 C -0.53 -32.39 8.61 25.60 0.22 -32.17 16 12 H 0.05 2.93 7.36 -2.92 -0.02 2.91 16 13 C 0.01 0.34 5.46 84.66 0.46 0.80 16 14 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 15 Si 0.95 47.82 29.54 68.60 2.03 49.85 16 16 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 17 H -0.27 -13.04 7.11 99.48 0.71 -12.34 16 18 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 19 C 0.52 22.93 6.87 87.90 0.60 23.53 16 20 O -0.57 -29.69 13.41 -3.03 -0.04 -29.73 16 21 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.07 1.51 7.90 -2.39 -0.02 1.50 16 24 H 0.05 1.66 7.08 -2.39 -0.02 1.65 16 25 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.03 1.21 7.06 -2.39 -0.02 1.19 16 27 H 0.08 1.17 7.21 -2.39 -0.02 1.16 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.11 1.95 7.12 -2.39 -0.02 1.93 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 2.58 7.87 -2.39 -0.02 2.56 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H -0.01 -0.41 8.12 -2.39 -0.02 -0.43 16 35 H 0.02 0.91 8.10 -2.39 -0.02 0.89 16 36 H 0.26 15.39 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -74.89 288.33 5.08 -69.81 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.03 Total: 4.21 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 3.91 Total: -14.33 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -1.84 Total: -79.81 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.04 Total: -29.73 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -74.89 5.08 -69.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.551 kcal (2) G-P(sol) polarization free energy of solvation -74.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds