Wall clock time and date at job start Mon Mar 30 2020 03:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47269 * 2 1 4 4 C 1.52999 * 109.47325 * 239.99671 * 2 1 3 5 5 H 1.08994 * 109.47234 * 306.18471 * 4 2 1 6 6 C 1.50702 * 109.46988 * 186.18545 * 4 2 1 7 7 H 1.08008 * 119.99576 * 244.32739 * 6 4 2 8 8 C 1.37875 * 120.00194 * 64.33228 * 6 4 2 9 9 N 1.31512 * 119.99779 * 196.23998 * 8 6 4 10 10 Si 1.86799 * 119.99998 * 16.23676 * 8 6 4 11 11 H 1.48498 * 109.46958 * 92.39949 * 10 8 6 12 12 H 1.48507 * 109.46791 * 212.40051 * 10 8 6 13 13 H 1.48505 * 109.47098 * 332.39783 * 10 8 6 14 14 C 1.53001 * 109.47169 * 66.18691 * 4 2 1 15 15 N 1.46502 * 109.46701 * 291.73372 * 14 4 2 16 16 C 1.34777 * 119.99793 * 173.33152 * 15 14 4 17 17 O 1.21278 * 120.00246 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00052 * 179.97438 * 16 15 14 19 19 C 1.52996 * 117.49940 * 248.74781 * 18 16 15 20 20 C 1.52996 * 117.50002 * 180.08958 * 18 16 15 21 21 H 1.09000 * 109.46826 * 49.08883 * 1 2 3 22 22 H 1.09000 * 109.46834 * 169.08622 * 1 2 3 23 23 H 1.08999 * 109.47277 * 289.08619 * 1 2 3 24 24 H 1.09004 * 109.47113 * 119.99679 * 2 1 3 25 25 H 1.08999 * 109.47312 * 66.46938 * 3 2 1 26 26 H 1.08991 * 109.47280 * 186.47800 * 3 2 1 27 27 H 1.09001 * 109.46722 * 306.47635 * 3 2 1 28 28 H 0.97004 * 120.00316 * 179.97438 * 9 8 6 29 29 H 1.08997 * 109.47199 * 51.73384 * 14 4 2 30 30 H 1.09000 * 109.47009 * 171.73675 * 14 4 2 31 31 H 0.96995 * 119.99947 * 353.33453 * 15 14 4 32 32 H 1.09002 * 115.54493 * 34.41796 * 18 16 15 33 33 H 1.09000 * 117.49994 * 0.02562 * 19 18 16 34 34 H 1.09008 * 117.49780 * 145.01831 * 19 18 16 35 35 H 1.08998 * 117.49701 * 214.98586 * 20 18 16 36 36 H 1.09006 * 117.49562 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.5892 -1.7120 -1.3062 6 6 3.5393 -0.8552 -1.1749 7 1 4.1628 -0.3521 -1.8992 8 6 4.1148 -1.6200 -0.1826 9 7 5.3953 -1.4909 0.0878 10 14 3.0757 -2.8394 0.7780 11 1 3.1457 -4.1714 0.1253 12 1 3.5899 -2.9413 2.1675 13 1 1.6655 -2.3747 0.8049 14 6 1.6610 0.0840 -2.4936 15 7 0.2076 0.0476 -2.6747 16 6 -0.3712 0.7999 -3.6316 17 8 0.3110 1.5065 -4.3429 18 6 -1.8662 0.7621 -3.8183 19 6 -2.4022 0.1177 -5.0983 20 6 -2.4626 1.6370 -4.9226 21 1 -0.3633 0.6730 -0.7766 22 1 -0.3633 -1.0091 -0.1946 23 1 -0.3634 0.3360 0.9711 24 1 1.8933 -0.5138 0.8900 25 1 1.7743 1.9218 0.9422 26 1 3.1237 1.4447 -0.1159 27 1 1.5851 1.9886 -0.8264 28 1 5.8003 -2.0286 0.7862 29 1 1.9861 1.1171 -2.3708 30 1 2.1470 -0.3484 -3.3682 31 1 -0.3380 -0.5178 -2.1060 32 1 -2.4506 0.6335 -2.9072 33 1 -1.6736 -0.2793 -5.8051 34 1 -3.3395 -0.4345 -5.0294 35 1 -3.4395 2.0839 -4.7382 36 1 -1.7736 2.2404 -5.5139 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260207685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:43 Heat of formation + Delta-G solvation = -20.501819 kcal Electronic energy + Delta-G solvation = -16121.519979 eV Core-core repulsion = 13606.373225 eV Total energy + Delta-G solvation = -2515.146754 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71457 -37.35755 -35.80831 -33.30916 -32.15405 -29.27010 -26.49914 -25.85856 -23.27263 -22.47128 -21.66472 -19.90465 -18.79134 -17.25349 -16.33839 -15.63298 -15.25891 -14.75682 -14.37785 -13.94079 -13.38395 -13.32030 -12.73472 -12.53178 -12.41102 -11.79166 -11.61680 -11.46949 -11.32571 -11.00293 -10.66839 -10.54819 -10.39163 -10.26704 -10.08197 -9.78915 -9.58221 -9.21025 -9.07978 -8.45103 -8.33120 -6.14809 -4.09276 2.79442 3.24290 3.34327 3.35850 3.58914 3.91712 4.38267 4.74777 4.86977 4.89467 5.14782 5.23871 5.51017 5.64648 5.72145 5.77302 5.89893 5.89977 6.07893 6.14538 6.24128 6.33494 6.46771 6.53690 6.59235 6.66181 6.85814 7.08347 7.21345 7.31730 7.38965 7.72887 7.97773 8.44349 8.64325 8.93175 9.50125 10.97926 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039915 B = 0.007149 C = 0.007043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.314319 B = 3915.532438 C = 3974.468896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.094 4.094 3 C -0.135 4.135 4 C 0.015 3.985 5 H 0.027 0.973 6 C -0.516 4.516 7 H 0.075 0.925 8 C 0.079 3.921 9 N -0.889 5.889 10 Si 0.863 3.137 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.253 1.253 14 C 0.129 3.871 15 N -0.719 5.719 16 C 0.531 3.469 17 O -0.550 6.550 18 C -0.194 4.194 19 C -0.155 4.155 20 C -0.150 4.150 21 H 0.060 0.940 22 H 0.044 0.956 23 H 0.041 0.959 24 H 0.062 0.938 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.264 0.736 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.399 0.601 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.474 2.013 -3.409 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.113 4.113 3 C -0.192 4.192 4 C -0.004 4.004 5 H 0.045 0.955 6 C -0.554 4.554 7 H 0.093 0.907 8 C -0.124 4.124 9 N -0.526 5.526 10 Si 0.690 3.310 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.177 1.177 14 C 0.007 3.993 15 N -0.371 5.371 16 C 0.316 3.684 17 O -0.429 6.429 18 C -0.215 4.215 19 C -0.193 4.193 20 C -0.188 4.188 21 H 0.078 0.922 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.092 0.908 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.236 0.764 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.789 2.449 -3.780 15.459 hybrid contribution -0.656 -1.111 1.081 1.683 sum -15.445 1.338 -2.699 15.736 Atomic orbital electron populations 1.22291 0.98407 1.00371 1.00860 1.21498 0.92320 0.97057 1.00445 1.21757 1.03058 0.95529 0.98817 1.19359 0.97685 0.93749 0.89646 0.95529 1.20734 0.88641 1.31403 1.14602 0.90710 1.24906 0.94686 0.96770 0.96009 1.69980 1.11935 1.39328 1.31341 0.87191 0.82228 0.82263 0.79358 1.20759 1.21500 1.17676 1.21649 0.76807 1.01660 0.99154 1.46662 1.10277 1.44985 1.35213 1.19617 0.88324 0.80021 0.80390 1.90667 1.64825 1.41430 1.45984 1.22266 0.94191 1.09368 0.95656 1.22915 1.02573 0.96243 0.97560 1.22916 1.01978 0.93509 1.00353 0.92167 0.93654 0.94009 0.91937 0.95069 0.90838 0.93909 0.92643 0.91115 0.92387 0.76362 0.86220 0.88292 0.88074 0.88255 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 7.62 37.16 0.28 -2.33 16 2 C -0.09 -1.90 1.96 -90.62 -0.18 -2.08 16 3 C -0.13 -2.65 8.37 37.16 0.31 -2.34 16 4 C 0.01 0.32 1.30 -91.77 -0.12 0.21 16 5 H 0.03 0.58 6.72 -51.93 -0.35 0.23 16 6 C -0.52 -13.70 7.92 -34.44 -0.27 -13.98 16 7 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 8 C 0.08 2.18 5.31 -17.82 -0.09 2.08 16 9 N -0.89 -26.27 13.96 55.43 0.77 -25.49 16 10 Si 0.86 20.36 25.78 -169.99 -4.38 15.98 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.25 -5.50 5.55 56.52 0.31 -5.18 16 14 C 0.13 2.62 4.71 -4.04 -0.02 2.60 16 15 N -0.72 -12.01 3.75 -60.29 -0.23 -12.24 16 16 C 0.53 8.87 7.61 -10.98 -0.08 8.79 16 17 O -0.55 -11.33 16.24 5.56 0.09 -11.24 16 18 C -0.19 -2.36 6.19 -91.77 -0.57 -2.93 16 19 C -0.16 -1.60 10.24 -26.70 -0.27 -1.88 16 20 C -0.15 -1.63 10.05 -26.70 -0.27 -1.90 16 21 H 0.06 0.91 5.83 -51.93 -0.30 0.60 16 22 H 0.04 0.68 7.53 -51.93 -0.39 0.29 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 1.37 5.04 -51.93 -0.26 1.11 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 1.64 7.23 -51.93 -0.38 1.26 16 27 H 0.04 0.80 6.49 -51.93 -0.34 0.47 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.07 1.52 5.98 -51.93 -0.31 1.21 16 30 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 31 H 0.40 5.81 5.80 -40.82 -0.24 5.58 16 32 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 1.34 7.67 -51.93 -0.40 0.95 16 LS Contribution 282.34 15.07 4.25 4.25 Total: -1.00 -30.24 282.34 -6.34 -36.58 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.56 Total: 5.90 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -1.28 Total: -13.75 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.55 Total: -37.73 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.38 Total: 15.98 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.24 -6.34 -36.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.075 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds