Wall clock time and date at job start Mon Mar 30 2020 03:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47269 * 2 1 4 4 C 1.52999 * 109.47325 * 239.99671 * 2 1 3 5 5 H 1.08994 * 109.47234 * 306.18471 * 4 2 1 6 6 C 1.50702 * 109.46988 * 186.18545 * 4 2 1 7 7 H 1.08008 * 119.99576 * 244.32739 * 6 4 2 8 8 C 1.37875 * 120.00194 * 64.33228 * 6 4 2 9 9 N 1.31512 * 119.99779 * 196.23998 * 8 6 4 10 10 Si 1.86799 * 119.99998 * 16.23676 * 8 6 4 11 11 H 1.48498 * 109.46958 * 92.39949 * 10 8 6 12 12 H 1.48507 * 109.46791 * 212.40051 * 10 8 6 13 13 H 1.48505 * 109.47098 * 332.39783 * 10 8 6 14 14 C 1.53001 * 109.47169 * 66.18691 * 4 2 1 15 15 N 1.46502 * 109.46701 * 291.73372 * 14 4 2 16 16 C 1.34777 * 119.99793 * 173.33152 * 15 14 4 17 17 O 1.21278 * 120.00246 * 0.02562 * 16 15 14 18 18 C 1.50706 * 120.00052 * 179.97438 * 16 15 14 19 19 C 1.52996 * 117.49940 * 248.74781 * 18 16 15 20 20 C 1.52996 * 117.50002 * 180.08958 * 18 16 15 21 21 H 1.09000 * 109.46826 * 49.08883 * 1 2 3 22 22 H 1.09000 * 109.46834 * 169.08622 * 1 2 3 23 23 H 1.08999 * 109.47277 * 289.08619 * 1 2 3 24 24 H 1.09004 * 109.47113 * 119.99679 * 2 1 3 25 25 H 1.08999 * 109.47312 * 66.46938 * 3 2 1 26 26 H 1.08991 * 109.47280 * 186.47800 * 3 2 1 27 27 H 1.09001 * 109.46722 * 306.47635 * 3 2 1 28 28 H 0.97004 * 120.00316 * 179.97438 * 9 8 6 29 29 H 1.08997 * 109.47199 * 51.73384 * 14 4 2 30 30 H 1.09000 * 109.47009 * 171.73675 * 14 4 2 31 31 H 0.96995 * 119.99947 * 353.33453 * 15 14 4 32 32 H 1.09002 * 115.54493 * 34.41796 * 18 16 15 33 33 H 1.09000 * 117.49994 * 0.02562 * 19 18 16 34 34 H 1.09008 * 117.49780 * 145.01831 * 19 18 16 35 35 H 1.08998 * 117.49701 * 214.98586 * 20 18 16 36 36 H 1.09006 * 117.49562 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.5892 -1.7120 -1.3062 6 6 3.5393 -0.8552 -1.1749 7 1 4.1628 -0.3521 -1.8992 8 6 4.1148 -1.6200 -0.1826 9 7 5.3953 -1.4909 0.0878 10 14 3.0757 -2.8394 0.7780 11 1 3.1457 -4.1714 0.1253 12 1 3.5899 -2.9413 2.1675 13 1 1.6655 -2.3747 0.8049 14 6 1.6610 0.0840 -2.4936 15 7 0.2076 0.0476 -2.6747 16 6 -0.3712 0.7999 -3.6316 17 8 0.3110 1.5065 -4.3429 18 6 -1.8662 0.7621 -3.8183 19 6 -2.4022 0.1177 -5.0983 20 6 -2.4626 1.6370 -4.9226 21 1 -0.3633 0.6730 -0.7766 22 1 -0.3633 -1.0091 -0.1946 23 1 -0.3634 0.3360 0.9711 24 1 1.8933 -0.5138 0.8900 25 1 1.7743 1.9218 0.9422 26 1 3.1237 1.4447 -0.1159 27 1 1.5851 1.9886 -0.8264 28 1 5.8003 -2.0286 0.7862 29 1 1.9861 1.1171 -2.3708 30 1 2.1470 -0.3484 -3.3682 31 1 -0.3380 -0.5178 -2.1060 32 1 -2.4506 0.6335 -2.9072 33 1 -1.6736 -0.2793 -5.8051 34 1 -3.3395 -0.4345 -5.0294 35 1 -3.4395 2.0839 -4.7382 36 1 -1.7736 2.2404 -5.5139 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260207685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:43 Heat of formation + Delta-G solvation = -40.340670 kcal Electronic energy + Delta-G solvation = -16122.380256 eV Core-core repulsion = 13606.373225 eV Total energy + Delta-G solvation = -2516.007031 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.06066 -38.86241 -36.91020 -34.96014 -34.06403 -30.96899 -27.98313 -27.53824 -24.70953 -23.33995 -23.20678 -21.29711 -20.38078 -18.72236 -18.02326 -17.16881 -16.70568 -16.19853 -15.81688 -15.37845 -14.93305 -14.78444 -14.60464 -14.11388 -13.56805 -13.27515 -13.07474 -12.85561 -12.82539 -12.40670 -12.22833 -12.07580 -11.80981 -11.51749 -11.47401 -11.39485 -11.13187 -10.90008 -10.79653 -10.50388 -9.85698 -8.28284 -6.27346 1.37675 1.41206 1.50944 1.56141 2.30240 2.38695 2.98292 3.06825 3.80056 3.92641 4.04285 4.08921 4.23940 4.30622 4.37775 4.58263 4.65070 4.77681 4.78392 4.89881 4.94024 4.96882 5.07877 5.13197 5.20921 5.27257 5.32904 5.45525 5.51746 5.63293 5.68040 5.84254 6.30792 6.66008 6.76846 7.33050 7.35372 8.88589 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.039915 B = 0.007149 C = 0.007043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.314319 B = 3915.532438 C = 3974.468896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.098 4.098 3 C -0.129 4.129 4 C 0.020 3.980 5 H 0.039 0.961 6 C -0.519 4.519 7 H 0.025 0.975 8 C 0.021 3.979 9 N -0.943 5.943 10 Si 0.928 3.072 11 H -0.279 1.279 12 H -0.292 1.292 13 H -0.214 1.214 14 C 0.144 3.856 15 N -0.708 5.708 16 C 0.525 3.475 17 O -0.598 6.598 18 C -0.200 4.200 19 C -0.142 4.142 20 C -0.150 4.150 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.264 0.736 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.415 0.585 32 H 0.155 0.845 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.894 1.169 -2.467 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.116 4.116 3 C -0.186 4.186 4 C 0.001 3.999 5 H 0.057 0.943 6 C -0.557 4.557 7 H 0.043 0.957 8 C -0.177 4.177 9 N -0.583 5.583 10 Si 0.752 3.248 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.137 1.137 14 C 0.020 3.980 15 N -0.362 5.362 16 C 0.314 3.686 17 O -0.480 6.480 18 C -0.221 4.221 19 C -0.179 4.179 20 C -0.187 4.187 21 H 0.088 0.912 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.255 0.745 32 H 0.172 0.828 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.261 1.599 -2.841 19.535 hybrid contribution 0.819 -0.757 0.677 1.304 sum -18.442 0.843 -2.164 18.588 Atomic orbital electron populations 1.22208 0.94371 1.02094 1.02640 1.21443 0.95750 0.96246 0.98211 1.21670 1.00408 0.96216 1.00278 1.19271 0.94356 0.94858 0.91463 0.94321 1.20978 0.91211 1.30367 1.13138 0.95684 1.25799 0.95856 0.98648 0.97426 1.70137 1.14383 1.40950 1.32797 0.86137 0.82332 0.79166 0.77187 1.20559 1.21851 1.13650 1.21165 0.79307 0.99967 0.97542 1.46435 1.08475 1.45442 1.35803 1.20509 0.90448 0.78617 0.79074 1.90652 1.66524 1.43272 1.47542 1.22297 0.90574 1.11326 0.97926 1.23053 1.03305 0.96114 0.95421 1.23015 1.02693 0.93864 0.99155 0.91150 0.91686 0.91878 0.93316 0.92694 0.94857 0.93416 0.92680 0.93019 0.94846 0.74548 0.82774 0.89963 0.84501 0.85010 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 7.62 71.98 0.55 -3.73 16 2 C -0.10 -3.72 1.96 -10.79 -0.02 -3.74 16 3 C -0.13 -4.99 8.37 71.98 0.60 -4.39 16 4 C 0.02 0.85 1.30 -11.54 -0.01 0.84 16 5 H 0.04 1.59 6.72 -2.39 -0.02 1.58 16 6 C -0.52 -28.70 7.92 25.60 0.20 -28.49 16 7 H 0.02 1.58 7.99 -2.91 -0.02 1.55 16 8 C 0.02 1.16 5.31 84.65 0.45 1.61 16 9 N -0.94 -58.20 13.96 21.45 0.30 -57.90 16 10 Si 0.93 41.52 25.78 68.60 1.77 43.29 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.21 -8.20 5.55 99.48 0.55 -7.65 16 14 C 0.14 5.91 4.71 86.38 0.41 6.31 16 15 N -0.71 -22.31 3.75 -463.05 -1.74 -24.04 16 16 C 0.53 16.78 7.61 87.66 0.67 17.45 16 17 O -0.60 -24.92 16.24 -3.02 -0.05 -24.97 16 18 C -0.20 -4.15 6.19 -11.54 -0.07 -4.22 16 19 C -0.14 -2.41 10.24 30.61 0.31 -2.09 16 20 C -0.15 -2.80 10.05 30.61 0.31 -2.49 16 21 H 0.07 1.80 5.83 -2.39 -0.01 1.78 16 22 H 0.06 1.56 7.53 -2.39 -0.02 1.54 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 2.00 5.04 -2.38 -0.01 1.99 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.03 1.52 7.23 -2.39 -0.02 1.51 16 27 H 0.05 1.77 6.49 -2.39 -0.02 1.76 16 28 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.05 2.31 5.98 -2.39 -0.01 2.29 16 30 H 0.03 1.51 8.12 -2.39 -0.02 1.49 16 31 H 0.41 10.46 5.80 -92.71 -0.54 9.93 16 32 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.14 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.96 7.67 -2.38 -0.02 1.94 16 Total: -1.00 -70.44 282.34 4.05 -66.39 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.37 Total: 20.19 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.39 Total: -22.96 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -1.44 Total: -81.94 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.97 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.77 Total: 43.29 kcal Total: -70.44 4.05 -66.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260207685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.049 kcal (2) G-P(sol) polarization free energy of solvation -70.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds