Wall clock time and date at job start Mon Mar 30 2020 03:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47312 * 2 1 4 4 C 1.52997 * 109.47190 * 120.00368 * 2 1 3 5 5 H 1.08999 * 109.47313 * 185.29425 * 4 2 1 6 6 C 1.50701 * 109.47134 * 305.29564 * 4 2 1 7 7 H 1.07997 * 120.00303 * 63.86271 * 6 4 2 8 8 C 1.37881 * 119.99515 * 243.86242 * 6 4 2 9 9 N 1.31522 * 119.99529 * 170.92143 * 8 6 4 10 10 Si 1.86793 * 120.00392 * 350.92506 * 8 6 4 11 11 H 1.48499 * 109.47582 * 91.01527 * 10 8 6 12 12 H 1.48501 * 109.47196 * 211.01477 * 10 8 6 13 13 H 1.48503 * 109.46982 * 331.01336 * 10 8 6 14 14 C 1.53002 * 109.47300 * 65.29225 * 4 2 1 15 15 H 1.08997 * 109.67531 * 296.40784 * 14 4 2 16 16 C 1.52892 * 109.73852 * 175.80878 * 14 4 2 17 17 C 1.52926 * 108.91097 * 172.66534 * 16 14 4 18 18 N 1.45752 * 110.32049 * 50.80846 * 17 16 14 19 19 C 1.33355 * 124.11229 * 341.03078 * 18 17 16 20 20 O 1.21269 * 118.24717 * 182.24386 * 19 18 17 21 21 C 1.50178 * 123.50335 * 2.22442 * 19 18 17 22 22 H 1.09003 * 109.46875 * 304.96183 * 1 2 3 23 23 H 1.08996 * 109.47337 * 64.96339 * 1 2 3 24 24 H 1.08997 * 109.47213 * 184.96726 * 1 2 3 25 25 H 1.09002 * 109.46952 * 240.00241 * 2 1 3 26 26 H 1.08998 * 109.47100 * 184.33785 * 3 2 1 27 27 H 1.09000 * 109.46729 * 304.33945 * 3 2 1 28 28 H 1.08996 * 109.46898 * 64.33960 * 3 2 1 29 29 H 0.97002 * 119.99632 * 180.02562 * 9 8 6 30 30 H 1.08993 * 109.35490 * 52.91711 * 16 14 4 31 31 H 1.09002 * 109.61819 * 292.56766 * 16 14 4 32 32 H 1.08999 * 109.29632 * 290.60239 * 17 16 14 33 33 H 1.08997 * 109.30140 * 171.02339 * 17 16 14 34 34 H 0.97000 * 117.94338 * 161.00636 * 18 17 16 35 35 H 1.08994 * 109.40588 * 102.54511 * 21 19 18 36 36 H 1.08997 * 109.39792 * 222.37404 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1258 -0.6399 1.2979 6 6 1.4335 -0.0907 2.4762 7 1 0.3657 -0.1321 2.6329 8 6 2.2418 0.5391 3.3987 9 7 1.7048 1.2412 4.3726 10 14 4.0994 0.3952 3.2653 11 1 4.6249 1.5144 2.4429 12 1 4.6992 0.4542 4.6225 13 1 4.4510 -0.8975 2.6245 14 6 1.6415 -2.1971 1.1844 15 1 0.5552 -2.2850 1.1999 16 6 2.2368 -2.9455 2.3773 17 6 1.6806 -4.3699 2.3965 18 7 1.8403 -4.9933 1.0887 19 6 2.0478 -4.3171 -0.0418 20 8 2.1247 -4.9418 -1.0784 21 6 2.1909 -2.8233 -0.0999 22 1 -0.3633 0.5889 0.8422 23 1 -0.3634 0.4349 -0.9310 24 1 -0.3633 -1.0238 0.0890 25 1 1.8933 -0.5138 -0.8900 26 1 3.1272 1.4434 -0.0777 27 1 1.6146 1.9782 -0.8486 28 1 1.7416 1.9333 0.9263 29 1 2.2735 1.6846 5.0214 30 1 1.9615 -2.4331 3.2991 31 1 3.3223 -2.9781 2.2843 32 1 0.6219 -4.3398 2.6543 33 1 2.2165 -4.9560 3.1430 34 1 1.7931 -5.9608 1.0376 35 1 3.2442 -2.5643 -0.2071 36 1 1.6348 -2.4393 -0.9550 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260337604.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:10 Heat of formation + Delta-G solvation = -85.319958 kcal Electronic energy + Delta-G solvation = -16647.920533 eV Core-core repulsion = 14129.963054 eV Total energy + Delta-G solvation = -2517.957479 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.31077 -38.82284 -36.72547 -34.14911 -33.54328 -30.48904 -29.33068 -27.83363 -25.46476 -24.59574 -22.33620 -20.45297 -19.81913 -18.70533 -18.19590 -16.88751 -16.42963 -15.91336 -15.67554 -15.26595 -14.97887 -14.72718 -14.52475 -14.30360 -13.62571 -13.27854 -13.05184 -12.85369 -12.60444 -12.56763 -12.33332 -11.90908 -11.88827 -11.73273 -11.57570 -11.25632 -10.78086 -10.67621 -10.54588 -10.33712 -10.00106 -8.13793 -6.09932 1.38576 1.43812 1.49564 1.65644 2.44856 2.45495 3.22496 3.78326 3.93280 4.04161 4.09300 4.40001 4.46649 4.51804 4.57876 4.66507 4.76377 4.91181 5.00461 5.04685 5.09947 5.17389 5.19007 5.33364 5.40857 5.49522 5.58805 5.65609 5.73158 5.81020 5.91243 5.96793 6.37814 6.52144 6.95956 7.26525 7.52714 9.02818 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025989 B = 0.011107 C = 0.009289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.133866 B = 2520.427924 C = 3013.752038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 C -0.137 4.137 4 C 0.017 3.983 5 H 0.032 0.968 6 C -0.468 4.468 7 H 0.041 0.959 8 C 0.024 3.976 9 N -0.952 5.952 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.301 1.301 13 H -0.236 1.236 14 C -0.071 4.071 15 H 0.067 0.933 16 C -0.131 4.131 17 C 0.115 3.885 18 N -0.708 5.708 19 C 0.521 3.479 20 O -0.611 6.611 21 C -0.130 4.130 22 H 0.037 0.963 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.067 0.933 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.258 0.742 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.403 0.597 35 H 0.098 0.902 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.578 -8.234 -4.945 9.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.108 4.108 3 C -0.194 4.194 4 C -0.001 4.001 5 H 0.050 0.950 6 C -0.506 4.506 7 H 0.059 0.941 8 C -0.173 4.173 9 N -0.593 5.593 10 Si 0.738 3.262 11 H -0.206 1.206 12 H -0.228 1.228 13 H -0.160 1.160 14 C -0.090 4.090 15 H 0.085 0.915 16 C -0.168 4.168 17 C -0.009 4.009 18 N -0.358 5.358 19 C 0.310 3.690 20 O -0.495 6.495 21 C -0.169 4.169 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.239 0.761 35 H 0.117 0.883 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.665 -8.197 -5.270 9.886 hybrid contribution 0.748 0.173 0.597 0.972 sum 2.413 -8.024 -4.673 9.594 Atomic orbital electron populations 1.21669 0.95793 1.00861 1.00147 1.21218 0.96000 0.95674 0.97902 1.21723 0.99468 0.97446 1.00785 1.19352 0.95856 0.91337 0.93596 0.95006 1.20978 0.93851 1.31973 1.03770 0.94058 1.25647 1.01377 0.94832 0.95397 1.70063 1.36676 1.34703 1.17872 0.86302 0.83055 0.80230 0.76609 1.20650 1.22841 1.15955 1.21180 0.99829 0.95979 0.92005 0.91453 1.21809 0.99980 0.94392 1.00652 1.21551 1.02059 0.94006 0.83237 1.45456 1.71697 1.10973 1.07662 1.20520 0.74257 0.91497 0.82739 1.90680 1.54278 1.70578 1.33947 1.21822 1.04241 0.89597 1.01246 0.94417 0.93040 0.93149 0.91463 0.94189 0.92476 0.94357 0.93264 0.90050 0.92343 0.90665 0.88152 0.76085 0.88340 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 8.55 71.98 0.62 -3.80 16 2 C -0.09 -3.17 2.43 -10.80 -0.03 -3.20 16 3 C -0.14 -5.05 9.08 71.98 0.65 -4.39 16 4 C 0.02 0.69 1.11 -11.54 -0.01 0.67 16 5 H 0.03 1.29 4.62 -2.39 -0.01 1.28 16 6 C -0.47 -22.75 5.66 25.60 0.14 -22.60 16 7 H 0.04 2.27 7.20 -2.91 -0.02 2.25 16 8 C 0.02 1.24 5.46 84.65 0.46 1.70 16 9 N -0.95 -55.52 13.96 21.45 0.30 -55.22 16 10 Si 0.91 40.86 27.17 68.60 1.86 42.72 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 13 H -0.24 -9.47 6.49 99.48 0.65 -8.83 16 14 C -0.07 -2.36 1.49 -10.80 -0.02 -2.38 16 15 H 0.07 2.31 6.64 -2.39 -0.02 2.30 16 16 C -0.13 -4.04 5.19 30.53 0.16 -3.88 16 17 C 0.11 2.65 7.18 86.50 0.62 3.27 16 18 N -0.71 -17.72 5.45 -467.32 -2.55 -20.27 16 19 C 0.52 16.38 7.71 87.71 0.68 17.06 16 20 O -0.61 -23.31 17.78 -3.00 -0.05 -23.37 16 21 C -0.13 -3.94 4.54 29.71 0.13 -3.80 16 22 H 0.04 1.51 6.84 -2.39 -0.02 1.50 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.05 1.65 6.44 -2.39 -0.02 1.63 16 25 H 0.07 2.09 6.36 -2.39 -0.02 2.08 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.66 7.25 -2.39 -0.02 1.64 16 29 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 30 H 0.08 2.91 7.15 -2.39 -0.02 2.89 16 31 H 0.06 1.81 8.09 -2.39 -0.02 1.79 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.40 8.53 8.80 -92.71 -0.82 7.72 16 35 H 0.10 2.90 8.10 -2.39 -0.02 2.88 16 36 H 0.10 2.99 6.94 -2.39 -0.02 2.98 16 Total: -1.00 -61.82 276.92 3.17 -58.65 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.19 Total: 18.83 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 3.41 Total: -21.35 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -2.25 Total: -75.48 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.86 Total: 42.72 kcal Total: -61.82 3.17 -58.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337604.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.671 kcal (2) G-P(sol) polarization free energy of solvation -61.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds