Wall clock time and date at job start Mon Mar 30 2020 03:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47272 * 2 1 4 4 C 1.53002 * 109.46768 * 119.99790 * 2 1 3 5 5 H 1.08995 * 109.47458 * 59.07717 * 4 2 1 6 6 C 1.50703 * 109.46890 * 299.07740 * 4 2 1 7 7 H 1.08009 * 119.99869 * 275.47907 * 6 4 2 8 8 C 1.37878 * 120.00079 * 95.48485 * 6 4 2 9 9 N 1.31509 * 120.00148 * 9.64616 * 8 6 4 10 10 Si 1.86799 * 119.99727 * 189.64554 * 8 6 4 11 11 H 1.48508 * 109.46852 * 90.00156 * 10 8 6 12 12 H 1.48501 * 109.46921 * 209.99733 * 10 8 6 13 13 H 1.48492 * 109.47716 * 330.00091 * 10 8 6 14 14 C 1.53003 * 109.46804 * 179.07905 * 4 2 1 15 15 H 1.08997 * 109.67291 * 55.10232 * 14 4 2 16 16 C 1.53340 * 109.67098 * 294.56236 * 14 4 2 17 17 C 1.52913 * 108.68298 * 172.75083 * 16 14 4 18 18 N 1.45750 * 110.49445 * 50.72604 * 17 16 14 19 19 C 1.33358 * 124.10896 * 340.95678 * 18 17 16 20 20 O 1.21280 * 118.24327 * 182.22575 * 19 18 17 21 21 C 1.50179 * 123.50681 * 2.20562 * 19 18 17 22 22 H 1.08998 * 109.47275 * 307.50458 * 1 2 3 23 23 H 1.09001 * 109.46922 * 67.50766 * 1 2 3 24 24 H 1.08999 * 109.47212 * 187.50250 * 1 2 3 25 25 H 1.08999 * 109.47293 * 239.99783 * 2 1 3 26 26 H 1.08994 * 109.47101 * 185.58610 * 3 2 1 27 27 H 1.09004 * 109.46684 * 305.58875 * 3 2 1 28 28 H 1.08999 * 109.47304 * 65.58199 * 3 2 1 29 29 H 0.96992 * 120.00555 * 179.97438 * 9 8 6 30 30 H 1.09002 * 109.60592 * 292.48788 * 16 14 4 31 31 H 1.08990 * 109.60629 * 52.98229 * 16 14 4 32 32 H 1.08996 * 109.28602 * 290.41553 * 17 16 14 33 33 H 1.09005 * 109.13763 * 170.93629 * 17 16 14 34 34 H 0.97005 * 117.94937 * 160.94369 * 18 17 16 35 35 H 1.08996 * 109.39811 * 222.28997 * 21 19 18 36 36 H 1.09000 * 109.39527 * 102.54400 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6632 -1.7440 1.2577 6 6 1.5563 0.0024 2.4796 7 1 2.1086 0.8490 2.8602 8 6 0.4090 -0.4164 3.1193 9 7 -0.1579 -1.5524 2.7763 10 14 -0.3403 0.6300 4.4733 11 1 -1.3149 1.5814 3.8815 12 1 -1.0351 -0.2472 5.4495 13 1 0.7333 1.3874 5.1651 14 6 3.5698 -0.7413 1.2378 15 1 3.9495 0.2759 1.1418 16 6 4.0660 -1.5915 0.0621 17 6 5.5853 -1.4500 -0.0379 18 7 6.2071 -1.6962 1.2571 19 6 5.5581 -1.6413 2.4208 20 8 6.1899 -1.8249 3.4396 21 6 4.0867 -1.3638 2.5372 22 1 -0.3634 0.6256 0.8152 23 1 -0.3633 0.3932 -0.9495 24 1 -0.3633 -1.0188 0.1342 25 1 1.8934 -0.5139 -0.8899 26 1 3.1254 1.4441 -0.1000 27 1 1.5973 1.9843 -0.8358 28 1 1.7607 1.9267 0.9357 29 1 -0.9648 -1.8472 3.2266 30 1 3.8068 -2.6367 0.2314 31 1 3.6046 -1.2429 -0.8618 32 1 5.8319 -0.4416 -0.3701 33 1 5.9644 -2.1708 -0.7624 34 1 7.1523 -1.9139 1.2736 35 1 3.9126 -0.6744 3.3633 36 1 3.5564 -2.2968 2.7278 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260337649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:20 Heat of formation + Delta-G solvation = -67.949319 kcal Electronic energy + Delta-G solvation = -16582.087290 eV Core-core repulsion = 14064.883058 eV Total energy + Delta-G solvation = -2517.204232 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.78523 -37.13333 -35.17731 -32.13256 -31.94889 -29.14745 -26.87225 -26.07180 -24.47436 -22.57902 -21.06909 -18.75071 -18.32104 -16.88264 -16.13139 -15.40203 -14.86884 -14.41341 -13.96691 -13.77962 -13.57441 -12.88407 -12.63227 -12.56868 -11.88960 -11.59465 -11.37318 -11.17447 -10.88808 -10.78090 -10.57046 -10.35256 -10.27791 -9.92656 -9.88473 -9.75745 -9.05785 -8.77350 -8.74724 -8.65378 -8.33418 -6.01763 -3.99694 3.17453 3.30869 3.39263 3.42293 3.72948 4.44812 5.18096 5.22533 5.30987 5.33010 5.53367 5.76815 5.95958 6.11180 6.18000 6.23091 6.31142 6.39155 6.43916 6.59036 6.80412 6.85630 6.90699 6.97329 7.06713 7.11089 7.28416 7.38232 7.51772 7.73019 7.75355 7.83797 7.94949 8.45389 8.68529 9.06675 9.61538 11.07273 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025863 B = 0.010453 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.377863 B = 2678.023203 C = 3354.877001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.136 4.136 4 C 0.045 3.955 5 H 0.062 0.938 6 C -0.504 4.504 7 H 0.052 0.948 8 C 0.073 3.927 9 N -0.886 5.886 10 Si 0.876 3.124 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.275 1.275 14 C -0.079 4.079 15 H 0.062 0.938 16 C -0.137 4.137 17 C 0.113 3.887 18 N -0.725 5.725 19 C 0.518 3.482 20 O -0.576 6.576 21 C -0.111 4.111 22 H 0.057 0.943 23 H 0.013 0.987 24 H 0.055 0.945 25 H 0.033 0.967 26 H 0.036 0.964 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.259 0.741 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.388 0.612 35 H 0.104 0.896 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.180 0.828 -7.633 9.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.101 4.101 3 C -0.193 4.193 4 C 0.026 3.974 5 H 0.080 0.920 6 C -0.542 4.542 7 H 0.071 0.929 8 C -0.129 4.129 9 N -0.524 5.524 10 Si 0.704 3.296 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.199 1.199 14 C -0.098 4.098 15 H 0.080 0.920 16 C -0.175 4.175 17 C -0.012 4.012 18 N -0.377 5.377 19 C 0.307 3.693 20 O -0.456 6.456 21 C -0.150 4.150 22 H 0.076 0.924 23 H 0.032 0.968 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.222 0.778 35 H 0.122 0.878 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.080 0.672 -7.061 9.342 hybrid contribution -0.177 0.514 0.626 0.829 sum 5.903 1.186 -6.435 8.812 Atomic orbital electron populations 1.21565 0.95980 1.02139 0.98076 1.21201 0.95635 0.95123 0.98132 1.21799 0.98817 0.97887 1.00792 1.18975 0.87368 0.98433 0.92576 0.92010 1.20933 1.08685 1.14147 1.10430 0.92940 1.24845 0.97334 0.94437 0.96302 1.69909 1.20477 1.19439 1.42623 0.86853 0.79691 0.80763 0.82298 1.20788 1.21473 1.19948 1.21424 1.00356 0.97158 0.90884 0.91982 1.22084 0.92515 1.01630 1.01271 1.21391 0.95323 1.00427 0.84030 1.45550 1.13140 1.72211 1.06810 1.20978 0.91698 0.74439 0.82199 1.90676 1.68535 1.51443 1.34908 1.21570 0.87982 1.04080 1.01390 0.92431 0.96767 0.92595 0.94911 0.94452 0.95543 0.91744 0.93087 0.91530 0.90068 0.92321 0.91636 0.77782 0.87780 0.88448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 8.27 37.16 0.31 -2.21 16 2 C -0.08 -1.61 2.54 -90.62 -0.23 -1.84 16 3 C -0.14 -2.45 8.55 37.16 0.32 -2.14 16 4 C 0.05 0.97 1.38 -91.77 -0.13 0.84 16 5 H 0.06 1.52 7.19 -51.93 -0.37 1.14 16 6 C -0.50 -12.27 5.08 -34.44 -0.17 -12.44 16 7 H 0.05 1.31 7.64 -52.48 -0.40 0.91 16 8 C 0.07 1.87 4.33 -17.82 -0.08 1.79 16 9 N -0.89 -23.66 12.32 55.43 0.68 -22.97 16 10 Si 0.88 20.52 29.55 -169.99 -5.02 15.49 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 C -0.08 -1.45 1.62 -90.40 -0.15 -1.59 16 15 H 0.06 1.14 6.33 -51.93 -0.33 0.81 16 16 C -0.14 -2.03 5.21 -26.60 -0.14 -2.17 16 17 C 0.11 1.38 7.17 -4.49 -0.03 1.35 16 18 N -0.73 -10.59 5.45 -61.39 -0.33 -10.92 16 19 C 0.52 9.68 7.71 -11.87 -0.09 9.59 16 20 O -0.58 -12.76 17.78 5.56 0.10 -12.66 16 21 C -0.11 -2.17 4.79 -28.10 -0.13 -2.30 16 22 H 0.06 1.32 6.96 -51.93 -0.36 0.96 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.05 1.26 7.94 -51.93 -0.41 0.85 16 25 H 0.03 0.59 6.42 -51.93 -0.33 0.26 16 26 H 0.04 0.61 6.65 -51.93 -0.35 0.27 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 1.28 6.87 -51.93 -0.36 0.92 16 29 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 30 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 31 H 0.08 1.12 6.30 -51.93 -0.33 0.80 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.39 4.96 8.80 -40.82 -0.36 4.60 16 35 H 0.10 2.22 7.56 -51.93 -0.39 1.83 16 36 H 0.10 2.02 8.10 -51.93 -0.42 1.60 16 LS Contribution 278.84 15.07 4.20 4.20 Total: -1.00 -27.86 278.84 -6.56 -34.42 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.66 Total: 3.55 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -0.53 Total: -11.12 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.35 Total: -33.89 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.10 Total: -12.66 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.86 -6.56 -34.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.530 kcal (2) G-P(sol) polarization free energy of solvation -27.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds