Wall clock time and date at job start Mon Mar 30 2020 03:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47272 * 2 1 4 4 C 1.53002 * 109.46768 * 119.99790 * 2 1 3 5 5 H 1.08995 * 109.47458 * 59.07717 * 4 2 1 6 6 C 1.50703 * 109.46890 * 299.07740 * 4 2 1 7 7 H 1.08009 * 119.99869 * 275.47907 * 6 4 2 8 8 C 1.37878 * 120.00079 * 95.48485 * 6 4 2 9 9 N 1.31509 * 120.00148 * 9.64616 * 8 6 4 10 10 Si 1.86799 * 119.99727 * 189.64554 * 8 6 4 11 11 H 1.48508 * 109.46852 * 90.00156 * 10 8 6 12 12 H 1.48501 * 109.46921 * 209.99733 * 10 8 6 13 13 H 1.48492 * 109.47716 * 330.00091 * 10 8 6 14 14 C 1.53003 * 109.46804 * 179.07905 * 4 2 1 15 15 H 1.08997 * 109.67291 * 55.10232 * 14 4 2 16 16 C 1.53340 * 109.67098 * 294.56236 * 14 4 2 17 17 C 1.52913 * 108.68298 * 172.75083 * 16 14 4 18 18 N 1.45750 * 110.49445 * 50.72604 * 17 16 14 19 19 C 1.33358 * 124.10896 * 340.95678 * 18 17 16 20 20 O 1.21280 * 118.24327 * 182.22575 * 19 18 17 21 21 C 1.50179 * 123.50681 * 2.20562 * 19 18 17 22 22 H 1.08998 * 109.47275 * 307.50458 * 1 2 3 23 23 H 1.09001 * 109.46922 * 67.50766 * 1 2 3 24 24 H 1.08999 * 109.47212 * 187.50250 * 1 2 3 25 25 H 1.08999 * 109.47293 * 239.99783 * 2 1 3 26 26 H 1.08994 * 109.47101 * 185.58610 * 3 2 1 27 27 H 1.09004 * 109.46684 * 305.58875 * 3 2 1 28 28 H 1.08999 * 109.47304 * 65.58199 * 3 2 1 29 29 H 0.96992 * 120.00555 * 179.97438 * 9 8 6 30 30 H 1.09002 * 109.60592 * 292.48788 * 16 14 4 31 31 H 1.08990 * 109.60629 * 52.98229 * 16 14 4 32 32 H 1.08996 * 109.28602 * 290.41553 * 17 16 14 33 33 H 1.09005 * 109.13763 * 170.93629 * 17 16 14 34 34 H 0.97005 * 117.94937 * 160.94369 * 18 17 16 35 35 H 1.08996 * 109.39811 * 222.28997 * 21 19 18 36 36 H 1.09000 * 109.39527 * 102.54400 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6632 -1.7440 1.2577 6 6 1.5563 0.0024 2.4796 7 1 2.1086 0.8490 2.8602 8 6 0.4090 -0.4164 3.1193 9 7 -0.1579 -1.5524 2.7763 10 14 -0.3403 0.6300 4.4733 11 1 -1.3149 1.5814 3.8815 12 1 -1.0351 -0.2472 5.4495 13 1 0.7333 1.3874 5.1651 14 6 3.5698 -0.7413 1.2378 15 1 3.9495 0.2759 1.1418 16 6 4.0660 -1.5915 0.0621 17 6 5.5853 -1.4500 -0.0379 18 7 6.2071 -1.6962 1.2571 19 6 5.5581 -1.6413 2.4208 20 8 6.1899 -1.8249 3.4396 21 6 4.0867 -1.3638 2.5372 22 1 -0.3634 0.6256 0.8152 23 1 -0.3633 0.3932 -0.9495 24 1 -0.3633 -1.0188 0.1342 25 1 1.8934 -0.5139 -0.8899 26 1 3.1254 1.4441 -0.1000 27 1 1.5973 1.9843 -0.8358 28 1 1.7607 1.9267 0.9357 29 1 -0.9648 -1.8472 3.2266 30 1 3.8068 -2.6367 0.2314 31 1 3.6046 -1.2429 -0.8618 32 1 5.8319 -0.4416 -0.3701 33 1 5.9644 -2.1708 -0.7624 34 1 7.1523 -1.9139 1.2736 35 1 3.9126 -0.6744 3.3633 36 1 3.5564 -2.2968 2.7278 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260337649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:19 Heat of formation + Delta-G solvation = -85.599908 kcal Electronic energy + Delta-G solvation = -16582.852677 eV Core-core repulsion = 14064.883058 eV Total energy + Delta-G solvation = -2517.969619 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22310 -38.72745 -36.61591 -33.92919 -33.52373 -30.49045 -28.63177 -27.63929 -26.10667 -23.99353 -22.59787 -20.27509 -19.83207 -18.23310 -17.99277 -16.80855 -16.49413 -16.11788 -15.55079 -15.20618 -14.93336 -14.41575 -14.31660 -14.08444 -13.48745 -13.12709 -12.98788 -12.79778 -12.60846 -12.45917 -12.26822 -11.94070 -11.80246 -11.65901 -11.50014 -11.29161 -10.77404 -10.46385 -10.36956 -10.19200 -9.96899 -8.00629 -5.99634 1.39328 1.44677 1.49523 1.68079 2.47802 2.50295 3.31700 3.86796 4.03595 4.10850 4.18591 4.57199 4.61231 4.65291 4.70231 4.77786 4.88822 5.03815 5.07366 5.14086 5.28192 5.29745 5.38357 5.41994 5.52496 5.61516 5.75821 5.81540 5.90969 5.96248 6.10566 6.12007 6.39748 6.57215 7.13734 7.30003 7.62085 9.07534 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025863 B = 0.010453 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.377863 B = 2678.023203 C = 3354.877001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.081 4.081 3 C -0.129 4.129 4 C 0.046 3.954 5 H 0.027 0.973 6 C -0.496 4.496 7 H 0.043 0.957 8 C 0.032 3.968 9 N -0.913 5.913 10 Si 0.915 3.085 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.275 1.275 14 C -0.072 4.072 15 H 0.068 0.932 16 C -0.133 4.133 17 C 0.112 3.888 18 N -0.707 5.707 19 C 0.520 3.480 20 O -0.617 6.617 21 C -0.107 4.107 22 H 0.028 0.972 23 H 0.041 0.959 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.254 0.746 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.403 0.597 35 H 0.076 0.924 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.750 1.552 -10.096 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.099 4.099 3 C -0.187 4.187 4 C 0.027 3.973 5 H 0.045 0.955 6 C -0.535 4.535 7 H 0.061 0.939 8 C -0.167 4.167 9 N -0.553 5.553 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.220 1.220 13 H -0.200 1.200 14 C -0.091 4.091 15 H 0.086 0.914 16 C -0.171 4.171 17 C -0.011 4.011 18 N -0.358 5.358 19 C 0.308 3.692 20 O -0.501 6.501 21 C -0.147 4.147 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.239 0.761 35 H 0.095 0.905 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.665 1.412 -9.570 12.342 hybrid contribution -0.660 0.299 1.348 1.530 sum 7.004 1.712 -8.222 10.936 Atomic orbital electron populations 1.21484 0.97205 1.00090 0.98364 1.21153 0.94570 0.96341 0.97868 1.21712 1.00202 0.96401 1.00347 1.18892 0.89689 0.96227 0.92492 0.95496 1.21197 1.07865 1.13351 1.11043 0.93872 1.25313 0.98184 0.95196 0.98007 1.70010 1.20855 1.20603 1.43835 0.86220 0.79033 0.79687 0.80692 1.20532 1.22032 1.19998 1.21284 0.97884 0.98147 0.91771 0.91419 1.22032 0.94698 1.00313 1.00035 1.21645 0.93131 1.03166 0.83139 1.45427 1.13773 1.70105 1.06477 1.20647 0.90986 0.74559 0.82966 1.90658 1.69056 1.53681 1.36716 1.21412 0.89256 1.02526 1.01531 0.95242 0.94014 0.95055 0.92193 0.92439 0.93444 0.94263 0.93643 0.92361 0.88143 0.89945 0.87594 0.76139 0.90515 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 8.27 71.98 0.60 -4.09 16 2 C -0.08 -2.99 2.54 -10.79 -0.03 -3.02 16 3 C -0.13 -4.30 8.55 71.98 0.62 -3.69 16 4 C 0.05 1.95 1.38 -11.54 -0.02 1.93 16 5 H 0.03 1.34 7.19 -2.39 -0.02 1.32 16 6 C -0.50 -24.60 5.08 25.60 0.13 -24.47 16 7 H 0.04 2.19 7.64 -2.91 -0.02 2.17 16 8 C 0.03 1.67 4.33 84.66 0.37 2.03 16 9 N -0.91 -50.42 12.32 21.45 0.26 -50.15 16 10 Si 0.92 43.06 29.55 68.60 2.03 45.09 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 C -0.07 -2.52 1.62 -10.65 -0.02 -2.54 16 15 H 0.07 2.31 6.33 -2.39 -0.02 2.30 16 16 C -0.13 -3.47 5.21 30.68 0.16 -3.31 16 17 C 0.11 2.18 7.17 86.49 0.62 2.80 16 18 N -0.71 -18.37 5.45 -467.33 -2.55 -20.92 16 19 C 0.52 18.99 7.71 87.71 0.68 19.66 16 20 O -0.62 -27.40 17.78 -3.03 -0.05 -27.45 16 21 C -0.11 -4.26 4.79 29.71 0.14 -4.11 16 22 H 0.03 1.34 6.96 -2.39 -0.02 1.32 16 23 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.03 1.40 7.94 -2.39 -0.02 1.38 16 25 H 0.06 1.93 6.42 -2.39 -0.02 1.91 16 26 H 0.06 1.67 6.65 -2.39 -0.02 1.65 16 27 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.04 1.49 6.87 -2.39 -0.02 1.47 16 29 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 30 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 31 H 0.10 2.28 6.30 -2.39 -0.02 2.27 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.40 8.84 8.80 -92.70 -0.82 8.02 16 35 H 0.08 3.41 7.56 -2.39 -0.02 3.39 16 36 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 Total: -1.00 -62.41 278.84 3.18 -59.22 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.25 Total: 13.00 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 3.25 Total: -18.79 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -2.28 Total: -71.07 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.45 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -62.41 3.18 -59.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.377 kcal (2) G-P(sol) polarization free energy of solvation -62.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds