Wall clock time and date at job start Mon Mar 30 2020 03:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47240 * 2 1 4 4 C 1.52992 * 109.47298 * 120.00323 * 2 1 3 5 5 H 1.08998 * 109.47414 * 53.61723 * 4 2 1 6 6 C 1.50693 * 109.47245 * 173.62095 * 4 2 1 7 7 H 1.08002 * 120.00212 * 115.57338 * 6 4 2 8 8 C 1.37881 * 120.00321 * 295.57111 * 6 4 2 9 9 N 1.31509 * 119.99442 * 353.94851 * 8 6 4 10 10 Si 1.86798 * 120.00084 * 173.94380 * 8 6 4 11 11 H 1.48495 * 109.47292 * 269.99800 * 10 8 6 12 12 H 1.48495 * 109.47462 * 30.00505 * 10 8 6 13 13 H 1.48501 * 109.46924 * 150.00168 * 10 8 6 14 14 C 1.53006 * 109.47265 * 293.62040 * 4 2 1 15 15 H 1.09001 * 110.85558 * 310.42643 * 14 4 2 16 16 C 1.54635 * 110.96677 * 74.24756 * 14 4 2 17 17 C 1.51283 * 104.19168 * 142.91727 * 16 14 4 18 18 O 1.21281 * 124.94225 * 163.74543 * 17 16 14 19 19 N 1.34419 * 110.11801 * 343.74779 * 17 16 14 20 20 C 1.46503 * 124.35013 * 179.56705 * 19 17 16 21 21 C 1.46766 * 111.30176 * 359.59564 * 19 17 16 22 22 H 1.09009 * 109.46926 * 309.77060 * 1 2 3 23 23 H 1.09001 * 109.47486 * 69.76498 * 1 2 3 24 24 H 1.08997 * 109.47508 * 189.77347 * 1 2 3 25 25 H 1.09003 * 109.46674 * 240.00363 * 2 1 3 26 26 H 1.08999 * 109.47414 * 182.34825 * 3 2 1 27 27 H 1.09002 * 109.47410 * 302.34883 * 3 2 1 28 28 H 1.09007 * 109.47299 * 62.34509 * 3 2 1 29 29 H 0.97001 * 120.00457 * 355.01948 * 9 8 6 30 30 H 1.08998 * 110.48804 * 261.59586 * 16 14 4 31 31 H 1.08997 * 110.48376 * 24.24679 * 16 14 4 32 32 H 1.08998 * 109.47098 * 270.02880 * 20 19 17 33 33 H 1.09003 * 109.47098 * 30.02763 * 20 19 17 34 34 H 1.08999 * 109.46621 * 150.02753 * 20 19 17 35 35 H 1.08998 * 110.24168 * 258.01658 * 21 19 17 36 36 H 1.08994 * 110.32134 * 136.05259 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5865 -1.7107 1.3081 6 6 3.5387 -0.8594 1.1727 7 1 4.1649 -0.3560 1.8944 8 6 4.1105 -1.6286 0.1815 9 7 3.3485 -2.3364 -0.6234 10 14 5.9674 -1.6650 -0.0182 11 1 6.3858 -0.5910 -0.9546 12 1 6.6117 -1.4492 1.3022 13 1 6.3811 -2.9838 -0.5612 14 6 1.6651 0.0865 2.4933 15 1 1.9491 1.1324 2.3771 16 6 0.1565 -0.0467 2.8057 17 6 0.0924 -0.0830 4.3167 18 8 -0.9106 0.0986 4.9739 19 7 1.3088 -0.3457 4.8249 20 6 1.6031 -0.4426 6.2568 21 6 2.3043 -0.5223 3.7611 22 1 -0.3633 0.6575 0.7899 23 1 -0.3634 0.3554 -0.9642 24 1 -0.3634 -1.0127 0.1744 25 1 1.8933 -0.5138 -0.8901 26 1 3.1292 1.4428 -0.0421 27 1 1.6428 1.9684 -0.8682 28 1 1.7115 1.9441 0.9103 29 1 2.3907 -2.3750 -0.4752 30 1 -0.3901 0.8144 2.4212 31 1 -0.2400 -0.9706 2.3848 32 1 1.8822 0.5398 6.6376 33 1 0.7196 -0.7998 6.7860 34 1 2.4263 -1.1399 6.4120 35 1 2.5092 -1.5820 3.6085 36 1 3.2237 0.0069 4.0113 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260375286.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:29 Heat of formation + Delta-G solvation = -50.333909 kcal Electronic energy + Delta-G solvation = -16558.770793 eV Core-core repulsion = 14042.330423 eV Total energy + Delta-G solvation = -2516.440370 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.09886 -37.23309 -35.35872 -32.41642 -31.64430 -28.33782 -26.76693 -26.10332 -25.22442 -23.18638 -20.77900 -19.19859 -18.55764 -16.81753 -16.38329 -15.52441 -14.89843 -14.36221 -13.79326 -13.59467 -13.40729 -13.27408 -12.85161 -12.49361 -12.28440 -11.97623 -11.74401 -11.53170 -11.31020 -10.91025 -10.85479 -10.67101 -10.21356 -10.09547 -10.00196 -9.72977 -9.55404 -9.06281 -8.41470 -8.35914 -8.31747 -6.36437 -4.09782 2.95918 3.40066 3.41370 3.43553 3.57277 4.48415 4.86391 5.14826 5.30631 5.40803 5.47291 5.53486 5.67927 5.81031 5.93927 6.00765 6.05003 6.08673 6.13164 6.33033 6.38021 6.47721 6.54998 6.65905 6.75245 6.82679 6.88636 7.17223 7.23966 7.44754 7.51055 7.56593 8.15879 8.39240 8.54222 8.82711 9.60026 10.99754 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.009683 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.870321 B = 2891.000789 C = 3557.620377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.097 4.097 3 C -0.130 4.130 4 C 0.052 3.948 5 H 0.023 0.977 6 C -0.591 4.591 7 H 0.050 0.950 8 C 0.024 3.976 9 N -0.910 5.910 10 Si 1.061 2.939 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.287 1.287 14 C -0.081 4.081 15 H 0.083 0.917 16 C -0.153 4.153 17 C 0.512 3.488 18 O -0.556 6.556 19 N -0.627 5.627 20 C 0.096 3.904 21 C 0.117 3.883 22 H 0.052 0.948 23 H 0.035 0.965 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.028 0.972 28 H 0.040 0.960 29 H 0.273 0.727 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.303 4.048 5.821 7.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.116 4.116 3 C -0.187 4.187 4 C 0.034 3.966 5 H 0.041 0.959 6 C -0.629 4.629 7 H 0.069 0.931 8 C -0.180 4.180 9 N -0.546 5.546 10 Si 0.890 3.110 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.213 1.213 14 C -0.100 4.100 15 H 0.101 0.899 16 C -0.193 4.193 17 C 0.301 3.699 18 O -0.435 6.435 19 N -0.361 5.361 20 C -0.046 4.046 21 C -0.005 4.005 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.562 3.519 5.313 6.397 hybrid contribution -1.066 0.595 0.950 1.547 sum -1.628 4.114 6.263 7.668 Atomic orbital electron populations 1.22235 0.98315 1.00636 1.00106 1.21225 0.92095 0.96205 1.02034 1.21735 1.01909 0.96366 0.98694 1.18872 0.96806 0.92893 0.88067 0.95939 1.21888 0.90764 1.33158 1.17046 0.93138 1.25629 1.06290 0.93067 0.93042 1.70743 1.07585 1.38488 1.37793 0.83657 0.75075 0.76542 0.75744 1.21550 1.21578 1.21272 1.22280 0.90762 1.01253 0.95667 0.89920 1.22790 1.00200 1.04553 0.91763 1.21294 0.82373 0.74730 0.91460 1.90638 1.33978 1.51666 1.67220 1.48424 1.10771 1.70182 1.06687 1.21452 1.01616 1.01179 0.80343 1.22242 0.90632 1.02170 0.85479 0.92883 0.94575 0.93613 0.90501 0.91986 0.95303 0.94073 0.91565 0.88580 0.88063 0.93106 0.91292 0.91219 0.90311 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 7.87 37.16 0.29 -2.43 16 2 C -0.10 -1.97 2.37 -90.62 -0.21 -2.19 16 3 C -0.13 -2.44 8.56 37.16 0.32 -2.12 16 4 C 0.05 1.12 0.82 -91.78 -0.07 1.04 16 5 H 0.02 0.53 7.24 -51.93 -0.38 0.16 16 6 C -0.59 -14.24 6.84 -34.44 -0.24 -14.48 16 7 H 0.05 1.21 7.26 -52.49 -0.38 0.83 16 8 C 0.02 0.63 5.20 -17.82 -0.09 0.54 16 9 N -0.91 -25.15 12.78 55.43 0.71 -24.45 16 10 Si 1.06 23.45 29.91 -169.99 -5.08 18.36 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 14 C -0.08 -1.47 2.36 -88.98 -0.21 -1.68 16 15 H 0.08 1.49 5.81 -51.93 -0.30 1.19 16 16 C -0.15 -2.63 4.53 -26.74 -0.12 -2.75 16 17 C 0.51 9.52 8.02 -10.86 -0.09 9.43 16 18 O -0.56 -11.81 17.59 5.56 0.10 -11.72 16 19 N -0.63 -10.46 3.33 -180.29 -0.60 -11.06 16 20 C 0.10 1.29 10.96 59.85 0.66 1.94 16 21 C 0.12 2.02 5.84 -3.12 -0.02 2.00 16 22 H 0.05 0.85 4.96 -51.92 -0.26 0.59 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.80 7.70 -51.93 -0.40 0.40 16 25 H 0.08 1.83 6.18 -51.93 -0.32 1.51 16 26 H 0.06 1.26 7.50 -51.93 -0.39 0.87 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.71 5.98 -51.92 -0.31 0.40 16 29 H 0.27 7.48 6.16 -40.82 -0.25 7.23 16 30 H 0.10 1.54 6.38 -51.93 -0.33 1.21 16 31 H 0.10 1.75 6.93 -51.93 -0.36 1.39 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.93 7.92 -51.93 -0.41 0.52 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.47 7.75 -51.93 -0.40 1.06 16 36 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 LS Contribution 276.72 15.07 4.17 4.17 Total: -1.00 -28.21 276.72 -5.90 -34.11 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.40 Total: 1.28 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 0.21 Total: -10.70 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 0.11 Total: -35.51 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.10 Total: -11.72 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.08 Total: 18.36 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.21 -5.90 -34.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375286.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.227 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds