Wall clock time and date at job start Mon Mar 30 2020 03:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47240 * 2 1 4 4 C 1.52992 * 109.47298 * 120.00323 * 2 1 3 5 5 H 1.08998 * 109.47414 * 53.61723 * 4 2 1 6 6 C 1.50693 * 109.47245 * 173.62095 * 4 2 1 7 7 H 1.08002 * 120.00212 * 115.57338 * 6 4 2 8 8 C 1.37881 * 120.00321 * 295.57111 * 6 4 2 9 9 N 1.31509 * 119.99442 * 353.94851 * 8 6 4 10 10 Si 1.86798 * 120.00084 * 173.94380 * 8 6 4 11 11 H 1.48495 * 109.47292 * 269.99800 * 10 8 6 12 12 H 1.48495 * 109.47462 * 30.00505 * 10 8 6 13 13 H 1.48501 * 109.46924 * 150.00168 * 10 8 6 14 14 C 1.53006 * 109.47265 * 293.62040 * 4 2 1 15 15 H 1.09001 * 110.85558 * 310.42643 * 14 4 2 16 16 C 1.54635 * 110.96677 * 74.24756 * 14 4 2 17 17 C 1.51283 * 104.19168 * 142.91727 * 16 14 4 18 18 O 1.21281 * 124.94225 * 163.74543 * 17 16 14 19 19 N 1.34419 * 110.11801 * 343.74779 * 17 16 14 20 20 C 1.46503 * 124.35013 * 179.56705 * 19 17 16 21 21 C 1.46766 * 111.30176 * 359.59564 * 19 17 16 22 22 H 1.09009 * 109.46926 * 309.77060 * 1 2 3 23 23 H 1.09001 * 109.47486 * 69.76498 * 1 2 3 24 24 H 1.08997 * 109.47508 * 189.77347 * 1 2 3 25 25 H 1.09003 * 109.46674 * 240.00363 * 2 1 3 26 26 H 1.08999 * 109.47414 * 182.34825 * 3 2 1 27 27 H 1.09002 * 109.47410 * 302.34883 * 3 2 1 28 28 H 1.09007 * 109.47299 * 62.34509 * 3 2 1 29 29 H 0.97001 * 120.00457 * 355.01948 * 9 8 6 30 30 H 1.08998 * 110.48804 * 261.59586 * 16 14 4 31 31 H 1.08997 * 110.48376 * 24.24679 * 16 14 4 32 32 H 1.08998 * 109.47098 * 270.02880 * 20 19 17 33 33 H 1.09003 * 109.47098 * 30.02763 * 20 19 17 34 34 H 1.08999 * 109.46621 * 150.02753 * 20 19 17 35 35 H 1.08998 * 110.24168 * 258.01658 * 21 19 17 36 36 H 1.08994 * 110.32134 * 136.05259 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5865 -1.7107 1.3081 6 6 3.5387 -0.8594 1.1727 7 1 4.1649 -0.3560 1.8944 8 6 4.1105 -1.6286 0.1815 9 7 3.3485 -2.3364 -0.6234 10 14 5.9674 -1.6650 -0.0182 11 1 6.3858 -0.5910 -0.9546 12 1 6.6117 -1.4492 1.3022 13 1 6.3811 -2.9838 -0.5612 14 6 1.6651 0.0865 2.4933 15 1 1.9491 1.1324 2.3771 16 6 0.1565 -0.0467 2.8057 17 6 0.0924 -0.0830 4.3167 18 8 -0.9106 0.0986 4.9739 19 7 1.3088 -0.3457 4.8249 20 6 1.6031 -0.4426 6.2568 21 6 2.3043 -0.5223 3.7611 22 1 -0.3633 0.6575 0.7899 23 1 -0.3634 0.3554 -0.9642 24 1 -0.3634 -1.0127 0.1744 25 1 1.8933 -0.5138 -0.8901 26 1 3.1292 1.4428 -0.0421 27 1 1.6428 1.9684 -0.8682 28 1 1.7115 1.9441 0.9103 29 1 2.3907 -2.3750 -0.4752 30 1 -0.3901 0.8144 2.4212 31 1 -0.2400 -0.9706 2.3848 32 1 1.8822 0.5398 6.6376 33 1 0.7196 -0.7998 6.7860 34 1 2.4263 -1.1399 6.4120 35 1 2.5092 -1.5820 3.6085 36 1 3.2237 0.0069 4.0113 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260375286.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:28 Heat of formation + Delta-G solvation = -66.449326 kcal Electronic energy + Delta-G solvation = -16559.469610 eV Core-core repulsion = 14042.330423 eV Total energy + Delta-G solvation = -2517.139187 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.54956 -38.83470 -36.85527 -34.23562 -33.06005 -29.93437 -28.13544 -27.53124 -26.77631 -24.97781 -22.26833 -20.60228 -20.23452 -18.58290 -17.82771 -16.97748 -16.28729 -15.84430 -15.57945 -15.26611 -14.95489 -14.61767 -14.32889 -14.07367 -13.65661 -13.24338 -13.16527 -12.98872 -12.86076 -12.61019 -12.45089 -12.22302 -11.91203 -11.65658 -11.61857 -11.37131 -11.10131 -10.63874 -10.28797 -10.19773 -9.69807 -8.38551 -6.10565 1.51204 1.61126 1.66414 1.82106 2.12460 2.67064 3.36323 3.47923 3.72913 3.92410 4.20612 4.36933 4.43425 4.49284 4.52801 4.55260 4.67308 4.73847 4.79291 4.89273 4.95367 4.97389 5.03920 5.10597 5.26793 5.32912 5.53654 5.55828 5.65627 5.82268 5.88152 6.07931 6.27424 6.44633 6.83659 7.12563 7.65648 8.98192 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027610 B = 0.009683 C = 0.007869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.870321 B = 2891.000789 C = 3557.620377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.124 4.124 4 C 0.054 3.946 5 H -0.006 1.006 6 C -0.582 4.582 7 H 0.054 0.946 8 C -0.025 4.025 9 N -0.943 5.943 10 Si 1.099 2.901 11 H -0.283 1.283 12 H -0.269 1.269 13 H -0.297 1.297 14 C -0.075 4.075 15 H 0.092 0.908 16 C -0.146 4.146 17 C 0.508 3.492 18 O -0.585 6.585 19 N -0.622 5.622 20 C 0.089 3.911 21 C 0.122 3.878 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.262 0.738 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 5.418 6.894 8.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.181 4.181 4 C 0.036 3.964 5 H 0.012 0.988 6 C -0.620 4.620 7 H 0.072 0.928 8 C -0.224 4.224 9 N -0.582 5.582 10 Si 0.924 3.076 11 H -0.209 1.209 12 H -0.194 1.194 13 H -0.223 1.223 14 C -0.094 4.094 15 H 0.110 0.890 16 C -0.185 4.185 17 C 0.297 3.703 18 O -0.467 6.467 19 N -0.355 5.355 20 C -0.052 4.052 21 C 0.000 4.000 22 H 0.091 0.909 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.204 4.900 6.413 8.073 hybrid contribution -1.168 0.156 0.655 1.348 sum -1.372 5.056 7.068 8.797 Atomic orbital electron populations 1.22142 0.95938 1.00899 1.01537 1.21118 0.94170 0.96677 0.99601 1.21667 1.00547 0.95411 1.00491 1.18773 0.95146 0.92261 0.90269 0.98797 1.22206 0.92390 1.31461 1.15947 0.92817 1.26708 1.09174 0.93144 0.93379 1.70839 1.07135 1.40742 1.39437 0.83148 0.71685 0.76064 0.76712 1.20892 1.19358 1.22347 1.22123 0.91724 1.01006 0.94525 0.89008 1.22732 0.99443 1.05134 0.91201 1.21433 0.82466 0.74556 0.91826 1.90625 1.34956 1.53326 1.67831 1.48507 1.09959 1.69038 1.07979 1.21712 1.02376 1.02867 0.78228 1.22111 0.91183 1.01286 0.85434 0.90904 0.93413 0.94213 0.94431 0.94021 0.93716 0.92050 0.92776 0.86974 0.88380 0.91392 0.91558 0.89021 0.91895 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 7.87 71.98 0.57 -4.40 16 2 C -0.10 -3.89 2.37 -10.80 -0.03 -3.92 16 3 C -0.12 -4.44 8.56 71.98 0.62 -3.82 16 4 C 0.05 2.30 0.82 -11.54 -0.01 2.29 16 5 H -0.01 -0.29 7.24 -2.39 -0.02 -0.31 16 6 C -0.58 -27.83 6.84 25.60 0.18 -27.65 16 7 H 0.05 2.49 7.26 -2.91 -0.02 2.47 16 8 C -0.03 -1.31 5.20 84.66 0.44 -0.87 16 9 N -0.94 -53.47 12.78 21.45 0.27 -53.20 16 10 Si 1.10 47.02 29.91 68.60 2.05 49.07 16 11 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 13 H -0.30 -13.13 7.11 99.48 0.71 -12.42 16 14 C -0.08 -2.59 2.36 -9.73 -0.02 -2.61 16 15 H 0.09 3.04 5.81 -2.39 -0.01 3.03 16 16 C -0.15 -4.72 4.53 30.59 0.14 -4.58 16 17 C 0.51 17.94 8.02 87.90 0.71 18.64 16 18 O -0.59 -24.04 17.59 -3.03 -0.05 -24.10 16 19 N -0.62 -19.40 3.33 -842.90 -2.81 -22.21 16 20 C 0.09 2.15 10.96 127.77 1.40 3.55 16 21 C 0.12 3.98 5.84 86.83 0.51 4.49 16 22 H 0.07 2.14 4.96 -2.38 -0.01 2.12 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.04 1.36 7.70 -2.39 -0.02 1.34 16 25 H 0.04 1.82 6.18 -2.39 -0.01 1.80 16 26 H 0.04 1.63 7.50 -2.39 -0.02 1.62 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.93 5.98 -2.38 -0.01 1.91 16 29 H 0.26 14.93 6.16 -92.71 -0.57 14.36 16 30 H 0.11 3.27 6.38 -2.39 -0.02 3.25 16 31 H 0.10 3.28 6.93 -2.39 -0.02 3.26 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.65 7.92 -2.39 -0.02 1.63 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 36 H 0.09 2.58 8.07 -2.39 -0.02 2.56 16 Total: -1.00 -60.35 276.72 5.21 -55.14 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.25 Total: 14.17 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 4.49 Total: -18.88 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -2.54 Total: -75.40 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.10 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.05 Total: 49.07 kcal Total: -60.35 5.21 -55.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260375286.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.306 kcal (2) G-P(sol) polarization free energy of solvation -60.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds