Wall clock time and date at job start Mon Mar 30 2020 03:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47378 * 2 1 4 4 C 1.53004 * 109.46878 * 239.99672 * 2 1 3 5 5 C 1.53000 * 109.46933 * 120.00243 * 2 1 3 6 6 C 1.53000 * 109.47416 * 65.60181 * 5 2 1 7 7 H 1.09006 * 110.97802 * 57.90744 * 6 5 2 8 8 C 1.54846 * 111.07728 * 181.99812 * 6 5 2 9 9 N 1.47605 * 101.89415 * 141.22520 * 8 6 5 10 10 C 1.28642 * 108.54484 * 345.04852 * 9 8 6 11 11 C 1.50699 * 122.93393 * 179.59100 * 10 9 8 12 12 C 1.50694 * 109.47312 * 359.97438 * 11 10 9 13 13 H 1.08000 * 120.00198 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99658 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00190 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99822 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47538 * 89.99525 * 16 14 12 18 18 H 1.48507 * 109.47283 * 210.00043 * 16 14 12 19 19 H 1.48506 * 109.47002 * 329.99552 * 16 14 12 20 20 O 1.34592 * 114.12357 * 359.59032 * 10 9 8 21 21 H 1.08998 * 109.47437 * 291.94504 * 1 2 3 22 22 H 1.08997 * 109.46875 * 51.94919 * 1 2 3 23 23 H 1.09004 * 109.47016 * 171.94350 * 1 2 3 24 24 H 1.08997 * 109.47348 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47125 * 300.00013 * 3 2 1 26 26 H 1.08998 * 109.46954 * 59.99696 * 3 2 1 27 27 H 1.08991 * 109.47776 * 300.00031 * 4 2 1 28 28 H 1.08998 * 109.47265 * 60.00789 * 4 2 1 29 29 H 1.09007 * 109.46723 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.47422 * 305.60280 * 5 2 1 31 31 H 1.09003 * 109.46877 * 185.60428 * 5 2 1 32 32 H 1.08998 * 110.94526 * 23.07524 * 8 6 5 33 33 H 1.09001 * 110.97940 * 259.38506 * 8 6 5 34 34 H 1.08998 * 109.47080 * 120.00125 * 11 10 9 35 35 H 1.09001 * 109.47161 * 239.99676 * 11 10 9 36 36 H 0.97000 * 119.99873 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 6 1.6482 -2.1987 1.1808 7 1 2.0485 -2.6674 0.2817 8 6 2.1036 -2.9551 2.4529 9 7 0.9662 -3.8658 2.6889 10 6 -0.0324 -3.4645 1.9841 11 6 -1.3642 -4.1696 1.9741 12 6 -1.3073 -5.3637 2.8916 13 1 -0.3976 -5.5897 3.4280 14 6 -2.4165 -6.1683 3.0454 15 7 -3.5240 -5.8933 2.3918 16 14 -2.3463 -7.6480 4.1833 17 1 -2.7593 -7.2413 5.5505 18 1 -3.2643 -8.7021 3.6818 19 1 -0.9592 -8.1772 4.2221 20 8 0.2165 -2.3599 1.2565 21 1 -0.3634 0.3840 0.9532 22 1 -0.3633 0.6334 -0.8092 23 1 -0.3633 -1.0176 -0.1440 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7217 -1.2490 30 1 1.5970 -0.2687 2.1364 31 1 3.1253 -0.6352 1.3008 32 1 2.2328 -2.2682 3.2893 33 1 3.0195 -3.5158 2.2666 34 1 -2.1403 -3.4849 2.3158 35 1 -1.5923 -4.5008 0.9610 36 1 -4.3044 -6.4591 2.5003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260389924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:16 Heat of formation + Delta-G solvation = -36.189265 kcal Electronic energy + Delta-G solvation = -15912.192145 eV Core-core repulsion = 13396.365132 eV Total energy + Delta-G solvation = -2515.827012 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65178 -37.42385 -33.50560 -32.63642 -31.19947 -28.57283 -27.35329 -27.08865 -25.24088 -23.31703 -21.72059 -19.41413 -18.67295 -16.52402 -16.08652 -15.53945 -14.78482 -14.47793 -14.25376 -14.19153 -13.51586 -12.76260 -12.75688 -12.40745 -12.18501 -12.08709 -11.74531 -11.62319 -11.56506 -11.40217 -10.97463 -10.74475 -10.68418 -10.59588 -10.43622 -10.26718 -9.85655 -9.47969 -8.88731 -8.49636 -8.17848 -6.02313 -4.01848 3.11027 3.37451 3.42622 3.49016 3.92441 4.51551 4.60204 4.78009 4.86185 4.99516 5.18227 5.28188 5.36117 5.47762 5.54537 5.60316 5.69196 5.74908 5.78380 5.86296 5.91526 5.95312 6.06790 6.14765 6.15836 6.28546 6.40845 6.61399 6.72783 7.24792 7.36727 7.39391 8.02359 8.21289 8.80373 9.10754 9.62048 11.10050 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052955 B = 0.005894 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.619033 B = 4749.247857 C = 5058.672381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.100 4.100 6 C 0.043 3.957 7 H 0.086 0.914 8 C -0.010 4.010 9 N -0.542 5.542 10 C 0.319 3.681 11 C 0.084 3.916 12 C -0.507 4.507 13 H 0.081 0.919 14 C 0.054 3.946 15 N -0.901 5.901 16 Si 0.903 3.097 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.272 1.272 20 O -0.343 6.343 21 H 0.051 0.949 22 H 0.045 0.955 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.411 11.744 -5.382 16.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.202 4.202 5 C -0.138 4.138 6 C -0.015 4.015 7 H 0.104 0.896 8 C -0.139 4.139 9 N -0.278 5.278 10 C 0.095 3.905 11 C 0.046 3.954 12 C -0.546 4.546 13 H 0.099 0.901 14 C -0.146 4.146 15 N -0.541 5.541 16 Si 0.730 3.270 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.197 1.197 20 O -0.248 6.248 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.097 0.903 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.409 11.222 -4.916 16.076 hybrid contribution 0.170 -0.127 0.133 0.251 sum 10.579 11.094 -4.782 16.058 Atomic orbital electron populations 1.21965 0.93552 1.03419 1.00957 1.20519 0.96763 0.94812 0.94718 1.21872 1.00490 0.95687 1.01670 1.21961 1.00375 1.00868 0.97009 1.21749 1.00667 0.92751 0.98607 1.24125 0.80569 0.97230 0.99585 0.89646 1.24106 0.98605 0.95406 0.95829 1.74980 1.00433 1.25996 1.26356 1.26967 0.98512 0.81163 0.83816 1.18175 0.83057 0.94346 0.99780 1.21196 0.99140 1.08692 1.25534 0.90073 1.25004 0.95252 0.98168 0.96223 1.69962 1.02398 1.39298 1.42410 0.86414 0.77950 0.81950 0.80647 1.20680 1.21366 1.19687 1.87081 1.23646 1.43997 1.70031 0.92941 0.93631 0.90265 0.92987 0.92724 0.92757 0.92090 0.92750 0.93016 0.91037 0.90521 0.90563 0.89741 0.93111 0.93095 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.62 37.16 0.28 -1.60 16 2 C -0.07 -0.78 0.80 -154.51 -0.12 -0.91 16 3 C -0.14 -1.34 8.47 37.16 0.31 -1.02 16 4 C -0.14 -1.57 7.99 37.16 0.30 -1.28 16 5 C -0.10 -1.24 4.11 -26.73 -0.11 -1.35 16 6 C 0.04 0.67 3.22 -25.76 -0.08 0.58 16 7 H 0.09 1.27 6.32 -51.93 -0.33 0.94 16 8 C -0.01 -0.17 7.70 -2.46 -0.02 -0.19 16 9 N -0.54 -12.34 10.20 -56.98 -0.58 -12.92 16 10 C 0.32 7.31 7.68 -13.61 -0.10 7.21 16 11 C 0.08 2.18 5.60 -29.04 -0.16 2.02 16 12 C -0.51 -14.46 8.95 -34.44 -0.31 -14.77 16 13 H 0.08 2.36 6.77 -52.49 -0.36 2.00 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 16 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 O -0.34 -6.65 7.81 -15.55 -0.12 -6.77 16 21 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 22 H 0.04 0.54 8.13 -51.93 -0.42 0.11 16 23 H 0.08 1.24 5.89 -51.93 -0.31 0.93 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.74 6.30 -51.93 -0.33 0.42 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.23 7.91 -51.93 -0.41 0.81 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.05 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 288.89 15.07 4.35 4.35 Total: -1.00 -29.88 288.89 -6.68 -36.56 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -5.93 Total: -2.58 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.11 Total: -9.85 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.15 Total: -38.72 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.12 Total: -6.77 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.88 -6.68 -36.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.368 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds