Wall clock time and date at job start Mon Mar 30 2020 03:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47378 * 2 1 4 4 C 1.53004 * 109.46878 * 239.99672 * 2 1 3 5 5 C 1.53000 * 109.46933 * 120.00243 * 2 1 3 6 6 C 1.53000 * 109.47416 * 65.60181 * 5 2 1 7 7 H 1.09006 * 110.97802 * 57.90744 * 6 5 2 8 8 C 1.54846 * 111.07728 * 181.99812 * 6 5 2 9 9 N 1.47605 * 101.89415 * 141.22520 * 8 6 5 10 10 C 1.28642 * 108.54484 * 345.04852 * 9 8 6 11 11 C 1.50699 * 122.93393 * 179.59100 * 10 9 8 12 12 C 1.50694 * 109.47312 * 359.97438 * 11 10 9 13 13 H 1.08000 * 120.00198 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99658 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00190 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99822 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47538 * 89.99525 * 16 14 12 18 18 H 1.48507 * 109.47283 * 210.00043 * 16 14 12 19 19 H 1.48506 * 109.47002 * 329.99552 * 16 14 12 20 20 O 1.34592 * 114.12357 * 359.59032 * 10 9 8 21 21 H 1.08998 * 109.47437 * 291.94504 * 1 2 3 22 22 H 1.08997 * 109.46875 * 51.94919 * 1 2 3 23 23 H 1.09004 * 109.47016 * 171.94350 * 1 2 3 24 24 H 1.08997 * 109.47348 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47125 * 300.00013 * 3 2 1 26 26 H 1.08998 * 109.46954 * 59.99696 * 3 2 1 27 27 H 1.08991 * 109.47776 * 300.00031 * 4 2 1 28 28 H 1.08998 * 109.47265 * 60.00789 * 4 2 1 29 29 H 1.09007 * 109.46723 * 180.02562 * 4 2 1 30 30 H 1.09003 * 109.47422 * 305.60280 * 5 2 1 31 31 H 1.09003 * 109.46877 * 185.60428 * 5 2 1 32 32 H 1.08998 * 110.94526 * 23.07524 * 8 6 5 33 33 H 1.09001 * 110.97940 * 259.38506 * 8 6 5 34 34 H 1.08998 * 109.47080 * 120.00125 * 11 10 9 35 35 H 1.09001 * 109.47161 * 239.99676 * 11 10 9 36 36 H 0.97000 * 119.99873 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 6 1.6482 -2.1987 1.1808 7 1 2.0485 -2.6674 0.2817 8 6 2.1036 -2.9551 2.4529 9 7 0.9662 -3.8658 2.6889 10 6 -0.0324 -3.4645 1.9841 11 6 -1.3642 -4.1696 1.9741 12 6 -1.3073 -5.3637 2.8916 13 1 -0.3976 -5.5897 3.4280 14 6 -2.4165 -6.1683 3.0454 15 7 -3.5240 -5.8933 2.3918 16 14 -2.3463 -7.6480 4.1833 17 1 -2.7593 -7.2413 5.5505 18 1 -3.2643 -8.7021 3.6818 19 1 -0.9592 -8.1772 4.2221 20 8 0.2165 -2.3599 1.2565 21 1 -0.3634 0.3840 0.9532 22 1 -0.3633 0.6334 -0.8092 23 1 -0.3633 -1.0176 -0.1440 24 1 3.1300 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 -1.7489 -1.2493 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7217 -1.2490 30 1 1.5970 -0.2687 2.1364 31 1 3.1253 -0.6352 1.3008 32 1 2.2328 -2.2682 3.2893 33 1 3.0195 -3.5158 2.2666 34 1 -2.1403 -3.4849 2.3158 35 1 -1.5923 -4.5008 0.9610 36 1 -4.3044 -6.4591 2.5003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:15 Heat of formation + Delta-G solvation = -56.257752 kcal Electronic energy + Delta-G solvation = -15913.062380 eV Core-core repulsion = 13396.365132 eV Total energy + Delta-G solvation = -2516.697247 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.14590 -38.45074 -35.52031 -34.29663 -32.79729 -30.28674 -28.17325 -28.06530 -26.74572 -25.27248 -23.03469 -21.08555 -19.66964 -18.33419 -17.80368 -17.19726 -16.33484 -16.03625 -15.47673 -15.20071 -14.70935 -14.44954 -14.03647 -13.96570 -13.63561 -13.30361 -13.29731 -12.81297 -12.76730 -12.63513 -12.51589 -12.43661 -12.14489 -11.92684 -11.62163 -11.51948 -11.45121 -11.26798 -10.63401 -10.61199 -9.84918 -8.21035 -6.28352 1.36601 1.43962 1.45358 1.57498 2.34997 2.57096 3.14755 3.39132 3.58169 3.88183 3.91054 3.99788 4.17490 4.31805 4.48235 4.64580 4.65060 4.71102 4.83683 4.84896 4.96191 5.01899 5.09261 5.10182 5.15444 5.19571 5.25747 5.28117 5.39765 5.46411 5.52545 5.69943 5.81377 6.09698 6.84262 7.12707 7.39901 8.91941 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052955 B = 0.005894 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.619033 B = 4749.247857 C = 5058.672381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.067 4.067 3 C -0.135 4.135 4 C -0.143 4.143 5 C -0.094 4.094 6 C 0.043 3.957 7 H 0.095 0.905 8 C -0.012 4.012 9 N -0.571 5.571 10 C 0.311 3.689 11 C 0.088 3.912 12 C -0.525 4.525 13 H 0.073 0.927 14 C 0.005 3.995 15 N -0.931 5.931 16 Si 0.970 3.030 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.269 1.269 20 O -0.346 6.346 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.315 12.375 -5.289 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.192 4.192 4 C -0.200 4.200 5 C -0.132 4.132 6 C -0.014 4.014 7 H 0.113 0.887 8 C -0.141 4.141 9 N -0.307 5.307 10 C 0.087 3.913 11 C 0.051 3.949 12 C -0.563 4.563 13 H 0.091 0.909 14 C -0.193 4.193 15 N -0.572 5.572 16 Si 0.795 3.205 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.194 1.194 20 O -0.251 6.251 21 H 0.060 0.940 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.324 11.873 -4.834 17.782 hybrid contribution -0.376 -0.265 0.070 0.465 sum 11.948 11.608 -4.764 17.326 Atomic orbital electron populations 1.21948 0.95429 1.01653 1.00819 1.20531 0.95174 0.96384 0.94663 1.21821 1.01519 0.93841 1.02036 1.21943 1.01557 0.99628 0.96917 1.21804 1.02500 0.90106 0.98767 1.24427 0.78211 0.99550 0.99194 0.88701 1.24273 0.97470 0.95245 0.97108 1.74859 1.01962 1.27775 1.26150 1.26227 0.97473 0.82361 0.85241 1.17842 0.84831 0.93915 0.98334 1.21408 0.99061 1.09763 1.26062 0.90876 1.25865 0.94763 1.01005 0.97650 1.70066 1.03033 1.40498 1.43564 0.85369 0.78094 0.78383 0.78695 1.19855 1.20368 1.19373 1.87099 1.26317 1.42361 1.69319 0.94026 0.92391 0.93179 0.91280 0.92045 0.92817 0.94000 0.92021 0.91083 0.91730 0.87348 0.89147 0.87586 0.95015 0.94789 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 7.62 71.98 0.55 -3.14 16 2 C -0.07 -1.40 0.80 -52.18 -0.04 -1.44 16 3 C -0.13 -2.15 8.47 71.98 0.61 -1.54 16 4 C -0.14 -2.77 7.99 71.98 0.57 -2.20 16 5 C -0.09 -2.09 4.11 30.59 0.13 -1.97 16 6 C 0.04 1.28 3.22 31.22 0.10 1.38 16 7 H 0.10 2.66 6.32 -2.38 -0.02 2.64 16 8 C -0.01 -0.39 7.70 86.80 0.67 0.28 16 9 N -0.57 -25.98 10.20 -449.43 -4.59 -30.57 16 10 C 0.31 14.61 7.68 88.58 0.68 15.29 16 11 C 0.09 4.81 5.60 29.10 0.16 4.97 16 12 C -0.52 -30.63 8.95 25.60 0.23 -30.40 16 13 H 0.07 4.32 6.77 -2.91 -0.02 4.30 16 14 C 0.01 0.29 5.46 84.66 0.46 0.75 16 15 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 16 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 17 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 O -0.35 -13.64 7.81 -78.57 -0.61 -14.25 16 21 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 22 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 23 H 0.05 1.60 5.89 -2.38 -0.01 1.58 16 24 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.04 0.96 6.30 -2.39 -0.02 0.95 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 31 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 2.71 7.91 -2.39 -0.02 2.69 16 33 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.03 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -64.86 288.89 2.27 -62.60 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.03 Total: 8.38 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 4.12 Total: -18.00 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -4.30 Total: -86.07 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.61 Total: -14.25 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -64.86 2.27 -62.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.338 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds