Wall clock time and date at job start Mon Mar 30 2020 03:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47117 * 2 1 4 4 C 1.52999 * 109.46997 * 120.00169 * 2 1 3 5 5 H 1.08994 * 109.47163 * 296.03255 * 4 2 1 6 6 C 1.52996 * 109.47463 * 56.03732 * 4 2 1 7 7 C 1.50708 * 109.46971 * 54.31144 * 6 4 2 8 8 H 1.08003 * 119.99834 * 354.77445 * 7 6 4 9 9 C 1.37878 * 119.99981 * 174.77468 * 7 6 4 10 10 N 1.31518 * 119.99853 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00104 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47228 * 89.99741 * 11 9 7 13 13 H 1.48497 * 109.47289 * 209.99903 * 11 9 7 14 14 H 1.48500 * 109.47089 * 330.00157 * 11 9 7 15 15 C 1.53002 * 109.46807 * 176.03520 * 4 2 1 16 16 H 1.09002 * 110.21631 * 53.41678 * 15 4 2 17 17 C 1.54485 * 110.24492 * 175.34467 * 15 4 2 18 18 C 1.54622 * 101.76180 * 93.58729 * 17 15 4 19 19 C 1.51282 * 104.20233 * 24.79740 * 18 17 15 20 20 O 1.21279 * 124.95015 * 163.78100 * 19 18 17 21 21 N 1.34428 * 110.11257 * 343.75055 * 19 18 17 22 22 H 1.08996 * 109.47206 * 301.20930 * 1 2 3 23 23 H 1.09001 * 109.47247 * 61.21368 * 1 2 3 24 24 H 1.09003 * 109.47215 * 181.21363 * 1 2 3 25 25 H 1.09002 * 109.46939 * 240.00036 * 2 1 3 26 26 H 1.08992 * 109.46942 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47033 * 300.00319 * 3 2 1 28 28 H 1.09003 * 109.46677 * 60.00056 * 3 2 1 29 29 H 1.08994 * 109.47277 * 174.31227 * 6 4 2 30 30 H 1.08999 * 109.46926 * 294.31966 * 6 4 2 31 31 H 0.96998 * 119.99946 * 179.97438 * 10 9 7 32 32 H 1.09007 * 110.96868 * 211.70144 * 17 15 4 33 33 H 1.08995 * 110.97064 * 335.43043 * 17 15 4 34 34 H 1.09004 * 110.48873 * 143.47903 * 18 17 15 35 35 H 1.09001 * 110.48695 * 265.98473 * 18 17 15 36 36 H 0.96996 * 124.35115 * 179.59834 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7358 -0.1681 2.1378 6 6 1.4502 -2.1321 1.3001 7 6 1.7530 -2.8499 0.0100 8 1 2.2357 -2.3237 -0.8003 9 6 1.4138 -4.1783 -0.1358 10 7 0.8265 -4.8192 0.8511 11 14 1.7897 -5.0682 -1.7345 12 1 3.1410 -5.6789 -1.6553 13 1 0.7782 -6.1321 -1.9586 14 1 1.7488 -4.1012 -2.8608 15 6 3.5667 -0.8082 1.2003 16 1 3.9957 0.1820 1.0468 17 6 4.1090 -1.4289 2.5069 18 6 4.2100 -2.9244 2.1272 19 6 4.3510 -2.9162 0.6210 20 8 4.7337 -3.8539 -0.0461 21 7 3.9896 -1.7184 0.1294 22 1 -0.3633 0.5325 0.8789 23 1 -0.3634 0.4949 -0.9007 24 1 -0.3634 -1.0275 0.0218 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.8907 -2.6802 2.1329 30 1 0.3706 -2.0699 1.4364 31 1 0.5875 -5.7536 0.7484 32 1 5.0896 -1.0222 2.7544 33 1 3.4087 -1.2810 3.3290 34 1 5.0870 -3.3771 2.5900 35 1 3.3058 -3.4555 2.4248 36 1 4.0061 -1.4855 -0.8120 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260421494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:33 Heat of formation + Delta-G solvation = -42.715721 kcal Electronic energy + Delta-G solvation = -17211.024599 eV Core-core repulsion = 14694.914578 eV Total energy + Delta-G solvation = -2516.110021 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.01611 -36.75503 -34.47440 -32.58623 -30.56209 -29.37303 -27.70525 -26.04523 -24.04497 -21.81023 -20.56387 -19.74392 -18.47655 -16.43581 -16.19907 -15.41148 -14.56291 -14.06994 -13.90973 -13.51397 -12.92135 -12.66959 -12.54200 -12.24717 -11.89212 -11.72271 -11.55144 -11.22040 -10.89983 -10.86636 -10.65172 -10.50335 -10.40921 -10.13976 -9.92762 -9.51302 -9.08396 -8.89141 -8.73652 -8.24687 -7.66577 -5.90402 -3.86224 3.45455 3.52498 3.65672 3.87000 4.44317 4.64497 5.07724 5.30999 5.36154 5.51138 5.59496 5.61151 5.71801 5.81300 5.98058 6.12773 6.23357 6.30151 6.32373 6.37555 6.38141 6.51207 6.58755 6.70636 6.81031 6.99181 7.09649 7.21489 7.74334 7.78215 7.87902 8.09261 8.15416 8.50909 9.14074 9.43023 9.76376 11.20137 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022952 B = 0.014720 C = 0.011333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.638664 B = 1901.657512 C = 2470.065844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C -0.150 4.150 4 C -0.092 4.092 5 H 0.052 0.948 6 C 0.019 3.981 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.067 3.933 10 N -0.896 5.896 11 Si 0.877 3.123 12 H -0.269 1.269 13 H -0.295 1.295 14 H -0.280 1.280 15 C 0.146 3.854 16 H 0.068 0.932 17 C -0.125 4.125 18 C -0.154 4.154 19 C 0.558 3.442 20 O -0.555 6.555 21 N -0.709 5.709 22 H 0.038 0.962 23 H 0.036 0.964 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.026 0.974 30 H 0.014 0.986 31 H 0.257 0.743 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 10.732 2.691 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.207 4.207 4 C -0.111 4.111 5 H 0.070 0.930 6 C -0.018 4.018 7 C -0.541 4.541 8 H 0.080 0.920 9 C -0.134 4.134 10 N -0.536 5.536 11 Si 0.706 3.294 12 H -0.194 1.194 13 H -0.222 1.222 14 H -0.205 1.205 15 C 0.040 3.960 16 H 0.085 0.915 17 C -0.163 4.163 18 C -0.194 4.194 19 C 0.347 3.653 20 O -0.434 6.434 21 N -0.362 5.362 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.138 0.862 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.848 10.045 2.520 11.048 hybrid contribution -0.094 -0.446 -1.277 1.356 sum 3.754 9.599 1.243 10.381 Atomic orbital electron populations 1.21788 0.95803 1.02957 0.99225 1.21004 0.95735 0.93479 0.99737 1.21985 1.00386 0.97746 1.00628 1.21670 0.93491 0.99958 0.96002 0.92984 1.19365 0.95797 0.88841 0.97748 1.21353 1.37972 0.94916 0.99829 0.91951 1.24877 0.94855 0.97830 0.95876 1.69942 1.41866 1.10291 1.31541 0.86793 0.78585 0.79728 0.84315 1.19400 1.22159 1.20548 1.21500 0.95344 0.92160 0.86956 0.91453 1.22540 1.00745 0.95534 0.97490 1.22417 1.04655 0.97298 0.95069 1.20069 0.73754 0.81434 0.90092 1.90634 1.49649 1.37194 1.65949 1.45938 1.67080 1.14490 1.08728 0.94246 0.94521 0.90594 0.90589 0.93248 0.93751 0.93443 0.95574 0.96785 0.93350 0.91560 0.90053 0.90582 0.86188 0.76385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.77 37.16 0.33 -2.06 16 2 C -0.08 -1.35 2.04 -90.62 -0.18 -1.53 16 3 C -0.15 -2.00 8.95 37.16 0.33 -1.67 16 4 C -0.09 -1.61 1.63 -90.62 -0.15 -1.75 16 5 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 6 C 0.02 0.43 3.68 -27.88 -0.10 0.33 16 7 C -0.50 -12.76 4.73 -34.44 -0.16 -12.93 16 8 H 0.06 1.56 4.23 -52.48 -0.22 1.34 16 9 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 10 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 11 Si 0.88 23.21 29.45 -169.99 -5.01 18.21 16 12 H -0.27 -7.52 7.11 56.52 0.40 -7.12 16 13 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 14 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 15 C 0.15 2.34 3.26 -67.01 -0.22 2.12 16 16 H 0.07 0.91 6.30 -51.93 -0.33 0.59 16 17 C -0.13 -1.87 6.29 -25.10 -0.16 -2.03 16 18 C -0.15 -2.91 6.05 -26.74 -0.16 -3.07 16 19 C 0.56 12.29 5.89 -10.86 -0.06 12.23 16 20 O -0.56 -14.65 17.94 5.56 0.10 -14.55 16 21 N -0.71 -13.36 3.45 -52.76 -0.18 -13.54 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 1.53 6.25 -51.93 -0.32 1.21 16 25 H 0.08 1.42 5.91 -51.93 -0.31 1.11 16 26 H 0.05 0.61 6.41 -51.93 -0.33 0.28 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.03 0.63 4.85 -51.93 -0.25 0.38 16 30 H 0.01 0.35 6.67 -51.93 -0.35 0.00 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 33 H 0.08 1.14 7.86 -51.93 -0.41 0.73 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.12 2.61 6.00 -51.93 -0.31 2.30 16 36 H 0.40 7.28 8.14 -40.82 -0.33 6.94 16 LS Contribution 270.09 15.07 4.07 4.07 Total: -1.00 -30.90 270.09 -6.18 -37.07 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.26 Total: 2.92 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.64 Total: -8.59 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.55 Total: -39.13 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.10 Total: -14.55 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.01 Total: 18.21 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.90 -6.18 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260421494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.643 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds