Wall clock time and date at job start Mon Mar 30 2020 03:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47117 * 2 1 4 4 C 1.52999 * 109.46997 * 120.00169 * 2 1 3 5 5 H 1.08994 * 109.47163 * 296.03255 * 4 2 1 6 6 C 1.52996 * 109.47463 * 56.03732 * 4 2 1 7 7 C 1.50708 * 109.46971 * 54.31144 * 6 4 2 8 8 H 1.08003 * 119.99834 * 354.77445 * 7 6 4 9 9 C 1.37878 * 119.99981 * 174.77468 * 7 6 4 10 10 N 1.31518 * 119.99853 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00104 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47228 * 89.99741 * 11 9 7 13 13 H 1.48497 * 109.47289 * 209.99903 * 11 9 7 14 14 H 1.48500 * 109.47089 * 330.00157 * 11 9 7 15 15 C 1.53002 * 109.46807 * 176.03520 * 4 2 1 16 16 H 1.09002 * 110.21631 * 53.41678 * 15 4 2 17 17 C 1.54485 * 110.24492 * 175.34467 * 15 4 2 18 18 C 1.54622 * 101.76180 * 93.58729 * 17 15 4 19 19 C 1.51282 * 104.20233 * 24.79740 * 18 17 15 20 20 O 1.21279 * 124.95015 * 163.78100 * 19 18 17 21 21 N 1.34428 * 110.11257 * 343.75055 * 19 18 17 22 22 H 1.08996 * 109.47206 * 301.20930 * 1 2 3 23 23 H 1.09001 * 109.47247 * 61.21368 * 1 2 3 24 24 H 1.09003 * 109.47215 * 181.21363 * 1 2 3 25 25 H 1.09002 * 109.46939 * 240.00036 * 2 1 3 26 26 H 1.08992 * 109.46942 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47033 * 300.00319 * 3 2 1 28 28 H 1.09003 * 109.46677 * 60.00056 * 3 2 1 29 29 H 1.08994 * 109.47277 * 174.31227 * 6 4 2 30 30 H 1.08999 * 109.46926 * 294.31966 * 6 4 2 31 31 H 0.96998 * 119.99946 * 179.97438 * 10 9 7 32 32 H 1.09007 * 110.96868 * 211.70144 * 17 15 4 33 33 H 1.08995 * 110.97064 * 335.43043 * 17 15 4 34 34 H 1.09004 * 110.48873 * 143.47903 * 18 17 15 35 35 H 1.09001 * 110.48695 * 265.98473 * 18 17 15 36 36 H 0.96996 * 124.35115 * 179.59834 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7358 -0.1681 2.1378 6 6 1.4502 -2.1321 1.3001 7 6 1.7530 -2.8499 0.0100 8 1 2.2357 -2.3237 -0.8003 9 6 1.4138 -4.1783 -0.1358 10 7 0.8265 -4.8192 0.8511 11 14 1.7897 -5.0682 -1.7345 12 1 3.1410 -5.6789 -1.6553 13 1 0.7782 -6.1321 -1.9586 14 1 1.7488 -4.1012 -2.8608 15 6 3.5667 -0.8082 1.2003 16 1 3.9957 0.1820 1.0468 17 6 4.1090 -1.4289 2.5069 18 6 4.2100 -2.9244 2.1272 19 6 4.3510 -2.9162 0.6210 20 8 4.7337 -3.8539 -0.0461 21 7 3.9896 -1.7184 0.1294 22 1 -0.3633 0.5325 0.8789 23 1 -0.3634 0.4949 -0.9007 24 1 -0.3634 -1.0275 0.0218 25 1 1.8933 -0.5138 -0.8900 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.8907 -2.6802 2.1329 30 1 0.3706 -2.0699 1.4364 31 1 0.5875 -5.7536 0.7484 32 1 5.0896 -1.0222 2.7544 33 1 3.4087 -1.2810 3.3290 34 1 5.0870 -3.3771 2.5900 35 1 3.3058 -3.4555 2.4248 36 1 4.0061 -1.4855 -0.8120 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260421494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:32 Heat of formation + Delta-G solvation = -63.156291 kcal Electronic energy + Delta-G solvation = -17211.910969 eV Core-core repulsion = 14694.914578 eV Total energy + Delta-G solvation = -2516.996390 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55570 -38.40100 -35.98751 -34.62583 -32.03494 -31.00138 -29.24665 -27.42910 -25.79022 -23.42606 -21.88291 -21.36119 -19.99754 -18.31140 -17.83305 -16.99727 -16.56379 -15.69344 -15.42658 -14.99417 -14.52848 -14.35538 -14.00807 -13.84615 -13.41313 -13.15252 -12.97393 -12.83511 -12.69158 -12.56027 -12.32801 -12.18301 -11.86487 -11.73218 -11.49539 -11.10073 -10.76334 -10.64560 -10.49509 -10.33010 -9.31231 -8.09306 -6.02115 1.27739 1.35991 1.46351 2.13635 2.47974 2.94233 3.34125 3.74192 3.91870 4.12287 4.30474 4.38207 4.40901 4.59693 4.69119 4.90924 4.96865 4.99793 5.04026 5.07265 5.21511 5.22461 5.30922 5.34302 5.41728 5.52203 5.69209 5.72460 5.86747 5.94583 6.05842 6.36162 6.47545 6.54074 7.08522 7.60291 7.76539 9.02188 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022952 B = 0.014720 C = 0.011333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.638664 B = 1901.657512 C = 2470.065844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.141 4.141 4 C -0.086 4.086 5 H 0.078 0.922 6 C 0.022 3.978 7 C -0.473 4.473 8 H 0.066 0.934 9 C 0.018 3.982 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.295 1.295 13 H -0.295 1.295 14 H -0.269 1.269 15 C 0.143 3.857 16 H 0.113 0.887 17 C -0.113 4.113 18 C -0.155 4.155 19 C 0.541 3.459 20 O -0.610 6.610 21 N -0.702 5.702 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.014 0.986 30 H -0.012 1.012 31 H 0.251 0.749 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.601 14.152 3.359 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 C -0.198 4.198 4 C -0.105 4.105 5 H 0.096 0.904 6 C -0.015 4.015 7 C -0.511 4.511 8 H 0.084 0.916 9 C -0.178 4.178 10 N -0.573 5.573 11 Si 0.739 3.261 12 H -0.222 1.222 13 H -0.221 1.221 14 H -0.194 1.194 15 C 0.038 3.962 16 H 0.130 0.870 17 C -0.150 4.150 18 C -0.195 4.195 19 C 0.330 3.670 20 O -0.493 6.493 21 N -0.353 5.353 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.006 0.994 31 H 0.060 0.940 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.727 13.523 3.177 14.673 hybrid contribution -0.380 -1.454 -1.494 2.119 sum 4.347 12.069 1.683 12.938 Atomic orbital electron populations 1.21741 0.96462 1.00625 1.00726 1.20969 0.95207 0.95829 0.97965 1.21880 1.01305 0.94723 1.01874 1.21611 0.94524 0.96603 0.97793 0.90366 1.19287 0.94423 0.92127 0.95677 1.21706 1.34543 0.94097 1.00772 0.91562 1.25371 0.96205 0.99236 0.97032 1.70013 1.44479 1.10114 1.32651 0.86283 0.76790 0.79376 0.83629 1.22185 1.22117 1.19388 1.21817 0.94221 0.93610 0.86541 0.86975 1.22628 1.03277 0.91884 0.97222 1.22367 1.03719 1.00480 0.92965 1.20725 0.73249 0.81510 0.91471 1.90597 1.52046 1.39256 1.67407 1.46037 1.65475 1.14103 1.09691 0.92587 0.93222 0.94796 0.93070 0.91662 0.92967 0.91859 0.96821 0.99393 0.94037 0.87755 0.88557 0.88954 0.89572 0.76210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 8.77 71.98 0.63 -3.80 16 2 C -0.08 -2.44 2.04 -10.79 -0.02 -2.46 16 3 C -0.14 -3.00 8.95 71.98 0.64 -2.36 16 4 C -0.09 -2.74 1.63 -10.79 -0.02 -2.75 16 5 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 6 C 0.02 0.97 3.68 29.85 0.11 1.08 16 7 C -0.47 -24.18 4.73 25.60 0.12 -24.06 16 8 H 0.07 3.31 4.23 -2.91 -0.01 3.29 16 9 C 0.02 1.06 5.45 84.65 0.46 1.52 16 10 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 11 Si 0.91 48.93 29.45 68.60 2.02 50.95 16 12 H -0.29 -17.07 7.11 99.48 0.71 -16.36 16 13 H -0.29 -15.66 7.11 99.48 0.71 -14.95 16 14 H -0.27 -13.79 7.11 99.48 0.71 -13.08 16 15 C 0.14 3.94 3.26 45.45 0.15 4.09 16 16 H 0.11 2.27 6.30 -2.39 -0.02 2.26 16 17 C -0.11 -2.87 6.29 31.65 0.20 -2.68 16 18 C -0.16 -5.66 6.05 30.59 0.19 -5.48 16 19 C 0.54 23.57 5.89 87.90 0.52 24.09 16 20 O -0.61 -32.85 17.94 -3.03 -0.05 -32.90 16 21 N -0.70 -24.97 3.45 -439.41 -1.52 -26.49 16 22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.03 1.35 6.25 -2.39 -0.01 1.34 16 25 H 0.05 1.79 5.91 -2.39 -0.01 1.78 16 26 H 0.06 1.20 6.41 -2.39 -0.02 1.18 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.01 0.66 4.85 -2.39 -0.01 0.65 16 30 H -0.01 -0.62 6.67 -2.39 -0.02 -0.64 16 31 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 32 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.10 2.24 7.86 -2.39 -0.02 2.22 16 34 H 0.09 3.00 8.14 -2.38 -0.02 2.98 16 35 H 0.09 3.80 6.00 -2.39 -0.01 3.78 16 36 H 0.40 13.87 8.14 -92.71 -0.75 13.12 16 Total: -1.00 -70.43 270.09 4.04 -66.39 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.33 Total: 11.11 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 2.98 Total: -12.81 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -1.23 Total: -82.74 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.05 Total: -32.90 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.02 Total: 50.95 kcal Total: -70.43 4.04 -66.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260421494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.237 kcal (2) G-P(sol) polarization free energy of solvation -70.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds