Wall clock time and date at job start Mon Mar 30 2020 03:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46946 * 2 1 4 4 C 1.53005 * 109.46762 * 119.99632 * 2 1 3 5 5 H 1.08997 * 109.46714 * 185.25641 * 4 2 1 6 6 C 1.52995 * 109.47182 * 305.26086 * 4 2 1 7 7 C 1.50709 * 109.46944 * 292.38484 * 6 4 2 8 8 H 1.07994 * 120.00040 * 359.31885 * 7 6 4 9 9 C 1.37880 * 119.99757 * 179.31105 * 7 6 4 10 10 N 1.31514 * 119.99318 * 179.72668 * 9 7 6 11 11 Si 1.86796 * 120.00139 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47075 * 269.71973 * 11 9 7 13 13 H 1.48498 * 109.47190 * 29.72172 * 11 9 7 14 14 H 1.48497 * 109.47011 * 149.71949 * 11 9 7 15 15 C 1.53003 * 109.46859 * 65.25832 * 4 2 1 16 16 H 1.08996 * 110.85738 * 295.04938 * 15 4 2 17 17 C 1.54485 * 110.96817 * 58.83707 * 15 4 2 18 18 N 1.46768 * 105.47047 * 143.53268 * 17 15 4 19 19 C 1.34424 * 111.30143 * 342.98326 * 18 17 15 20 20 O 1.21278 * 124.93913 * 180.40800 * 19 18 17 21 21 C 1.51286 * 110.11457 * 0.40842 * 19 18 17 22 22 H 1.08989 * 109.47458 * 307.95209 * 1 2 3 23 23 H 1.08998 * 109.46735 * 67.95279 * 1 2 3 24 24 H 1.08999 * 109.46767 * 187.94467 * 1 2 3 25 25 H 1.08996 * 109.47187 * 239.99576 * 2 1 3 26 26 H 1.08997 * 109.46722 * 170.59604 * 3 2 1 27 27 H 1.09000 * 109.47156 * 290.59939 * 3 2 1 28 28 H 1.08998 * 109.47078 * 50.60373 * 3 2 1 29 29 H 1.08998 * 109.47065 * 172.39217 * 6 4 2 30 30 H 1.08989 * 109.47550 * 52.38724 * 6 4 2 31 31 H 0.97005 * 119.99334 * 180.27727 * 10 9 7 32 32 H 1.08992 * 110.24493 * 262.53023 * 17 15 4 33 33 H 1.09001 * 110.24665 * 24.44553 * 17 15 4 34 34 H 0.96996 * 124.34433 * 163.00477 * 18 17 15 35 35 H 1.08999 * 110.48139 * 257.57247 * 21 19 18 36 36 H 1.08998 * 110.48409 * 134.92825 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 3.1259 -0.6404 1.2977 6 6 1.4248 -0.0803 2.4950 7 6 1.9661 1.3164 2.6606 8 1 2.6860 1.7038 1.9549 9 6 1.5421 2.0998 3.7131 10 7 2.0186 3.3167 3.8606 11 14 0.2974 1.4296 4.9341 12 1 -1.0753 1.7552 4.4707 13 1 0.4486 -0.0441 5.0366 14 1 0.5294 2.0448 6.2655 15 6 1.6407 -2.1968 1.1850 16 1 0.5571 -2.3077 1.2238 17 6 2.2207 -2.8719 -0.0777 18 7 2.5793 -4.2336 0.3361 19 6 2.6483 -4.3350 1.6747 20 8 2.9317 -5.3464 2.2810 21 6 2.3212 -3.0039 2.3149 22 1 -0.3634 0.6319 0.8102 23 1 -0.3633 0.3858 -0.9525 24 1 -0.3633 -1.0178 0.1420 25 1 1.8934 -0.5139 -0.8899 26 1 3.1170 1.4471 0.1679 27 1 1.8202 1.9056 -0.9620 28 1 1.5462 2.0025 0.7941 29 1 1.6789 -0.6748 3.3726 30 1 0.3413 -0.0394 2.3851 31 1 1.7233 3.8663 4.6034 32 1 1.4700 -2.9030 -0.8673 33 1 3.1054 -2.3349 -0.4199 34 1 2.7454 -4.9661 -0.2776 35 1 3.2325 -2.5050 2.6446 36 1 1.6361 -3.1411 3.1515 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260534573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:55 Heat of formation + Delta-G solvation = -72.325345 kcal Electronic energy + Delta-G solvation = -16340.547113 eV Core-core repulsion = 13823.153122 eV Total energy + Delta-G solvation = -2517.393990 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.42730 -39.07508 -36.80278 -34.42791 -32.71642 -30.70463 -28.93252 -27.82881 -26.50150 -23.15296 -22.19332 -21.36512 -19.69137 -18.60985 -18.32064 -17.29236 -16.22731 -16.05632 -15.75259 -15.01946 -14.80552 -14.48178 -14.37525 -14.12387 -13.86863 -13.38763 -13.18794 -12.70689 -12.64193 -12.55080 -12.28853 -12.08061 -11.92367 -11.69164 -11.26334 -11.10337 -11.00531 -10.72095 -10.60264 -10.29849 -10.04200 -8.11703 -6.07237 1.38148 1.43063 1.50808 1.56125 2.45882 2.49513 3.22982 3.48351 3.62009 3.85289 4.17234 4.33567 4.40346 4.52601 4.71396 4.73982 4.77697 4.95958 4.98619 5.03673 5.08484 5.21550 5.30958 5.36947 5.39190 5.42680 5.65875 5.75081 5.82958 5.86156 5.90427 6.03469 6.06819 6.52239 6.99479 7.27902 7.51385 9.02379 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027299 B = 0.009003 C = 0.007505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.441327 B = 3109.478571 C = 3729.801602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.151 4.151 4 C -0.053 4.053 5 H 0.057 0.943 6 C -0.013 4.013 7 C -0.504 4.504 8 H 0.073 0.927 9 C 0.003 3.997 10 N -0.955 5.955 11 Si 0.924 3.076 12 H -0.273 1.273 13 H -0.249 1.249 14 H -0.299 1.299 15 C -0.090 4.090 16 H 0.099 0.901 17 C 0.107 3.893 18 N -0.717 5.717 19 C 0.517 3.483 20 O -0.592 6.592 21 C -0.153 4.153 22 H 0.036 0.964 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.010 0.990 30 H 0.024 0.976 31 H 0.258 0.742 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.417 0.583 35 H 0.101 0.899 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -10.986 -10.729 15.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C -0.207 4.207 4 C -0.072 4.072 5 H 0.076 0.924 6 C -0.051 4.051 7 C -0.542 4.542 8 H 0.091 0.909 9 C -0.192 4.192 10 N -0.598 5.598 11 Si 0.750 3.250 12 H -0.199 1.199 13 H -0.172 1.172 14 H -0.226 1.226 15 C -0.109 4.109 16 H 0.117 0.883 17 C -0.016 4.016 18 N -0.371 5.371 19 C 0.304 3.696 20 O -0.473 6.473 21 C -0.194 4.194 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.028 0.972 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.257 0.743 35 H 0.120 0.880 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.840 -11.268 -10.261 15.502 hybrid contribution -0.240 0.184 0.907 0.956 sum -3.080 -11.084 -9.354 14.827 Atomic orbital electron populations 1.21899 0.95431 1.01843 1.01072 1.20953 0.95898 0.95236 0.96917 1.22268 0.99819 0.98037 1.00625 1.21005 0.99276 0.91295 0.95589 0.92431 1.19705 0.96527 0.94258 0.94576 1.21961 1.23878 0.98380 1.09947 0.90912 1.25777 0.98576 0.95134 0.99703 1.70049 1.46813 1.10452 1.32454 0.86046 0.80232 0.80078 0.78655 1.19879 1.17239 1.22557 1.22246 1.01119 0.94406 0.93081 0.88272 1.22364 1.01543 0.80353 0.97332 1.46213 1.70037 1.14027 1.06840 1.21217 0.74741 0.89727 0.83877 1.90692 1.51833 1.36272 1.68524 1.22435 1.03581 0.93239 1.00106 0.94481 0.92354 0.91314 0.89610 0.94948 0.94079 0.91548 0.97159 0.95779 0.93327 0.87210 0.89752 0.74281 0.88043 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.84 8.36 71.98 0.60 -3.24 16 2 C -0.07 -2.00 2.55 -10.79 -0.03 -2.03 16 3 C -0.15 -5.33 7.50 71.98 0.54 -4.80 16 4 C -0.05 -1.62 1.17 -10.79 -0.01 -1.63 16 5 H 0.06 1.90 7.99 -2.39 -0.02 1.88 16 6 C -0.01 -0.54 3.19 29.85 0.10 -0.45 16 7 C -0.50 -25.74 7.18 25.60 0.18 -25.56 16 8 H 0.07 3.97 5.00 -2.91 -0.01 3.96 16 9 C 0.00 0.19 5.47 84.66 0.46 0.65 16 10 N -0.95 -57.88 13.96 21.45 0.30 -57.58 16 11 Si 0.92 43.12 27.46 68.60 1.88 45.01 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.25 -10.80 6.56 99.48 0.65 -10.15 16 14 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 15 C -0.09 -2.13 2.29 -9.73 -0.02 -2.15 16 16 H 0.10 2.20 6.73 -2.39 -0.02 2.18 16 17 C 0.11 1.85 6.17 86.83 0.54 2.39 16 18 N -0.72 -14.41 6.24 -459.79 -2.87 -17.27 16 19 C 0.52 14.77 8.43 87.90 0.74 15.51 16 20 O -0.59 -21.96 18.03 -3.02 -0.05 -22.02 16 21 C -0.15 -4.20 5.58 30.59 0.17 -4.03 16 22 H 0.04 1.21 6.59 -2.39 -0.02 1.20 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.07 1.48 6.37 -2.39 -0.02 1.47 16 25 H 0.09 1.81 6.92 -2.39 -0.02 1.80 16 26 H 0.03 1.19 7.42 -2.39 -0.02 1.18 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 28 H 0.07 2.96 5.18 -2.39 -0.01 2.95 16 29 H 0.01 0.42 6.50 -2.39 -0.02 0.41 16 30 H 0.02 0.96 5.49 -2.39 -0.01 0.95 16 31 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.38 7.66 -2.39 -0.02 1.36 16 34 H 0.42 6.58 8.96 -92.71 -0.83 5.75 16 35 H 0.10 2.93 7.82 -2.39 -0.02 2.92 16 36 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -66.62 273.85 2.72 -63.90 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.19 Total: 13.31 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: 3.27 Total: -25.34 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -2.57 Total: -74.86 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.05 Total: -22.02 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.88 Total: 45.01 kcal Total: -66.62 2.72 -63.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260534573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.425 kcal (2) G-P(sol) polarization free energy of solvation -66.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds