Wall clock time and date at job start Mon Mar 30 2020 03:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47179 * 2 1 4 4 C 1.53001 * 109.46963 * 119.99797 * 2 1 3 5 5 H 1.08999 * 109.47455 * 186.80880 * 4 2 1 6 6 C 1.53003 * 109.46882 * 66.81191 * 4 2 1 7 7 C 1.50692 * 109.47399 * 63.26796 * 6 4 2 8 8 H 1.08000 * 119.99939 * 3.58971 * 7 6 4 9 9 C 1.37877 * 120.00551 * 183.58854 * 7 6 4 10 10 N 1.31518 * 119.99649 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00296 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47270 * 60.00101 * 11 9 7 13 13 H 1.48509 * 109.47049 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47286 * 299.99703 * 11 9 7 15 15 C 1.52996 * 109.47130 * 306.81140 * 4 2 1 16 16 H 1.09003 * 110.88512 * 57.90551 * 15 4 2 17 17 C 1.54478 * 110.97232 * 294.09639 * 15 4 2 18 18 N 1.46757 * 105.47603 * 216.46597 * 17 15 4 19 19 C 1.34421 * 111.30118 * 17.01474 * 18 17 15 20 20 O 1.21287 * 124.94286 * 179.57208 * 19 18 17 21 21 C 1.51279 * 110.11495 * 359.59292 * 19 18 17 22 22 H 1.09004 * 109.47068 * 66.22667 * 1 2 3 23 23 H 1.09000 * 109.47210 * 186.22687 * 1 2 3 24 24 H 1.08999 * 109.47092 * 306.22820 * 1 2 3 25 25 H 1.09001 * 109.47328 * 239.99559 * 2 1 3 26 26 H 1.09000 * 109.47106 * 164.79167 * 3 2 1 27 27 H 1.08994 * 109.47238 * 284.78459 * 3 2 1 28 28 H 1.08993 * 109.47400 * 44.78855 * 3 2 1 29 29 H 1.09002 * 109.46635 * 183.26880 * 6 4 2 30 30 H 1.09001 * 109.47149 * 303.26529 * 6 4 2 31 31 H 0.96998 * 119.99889 * 179.97438 * 10 9 7 32 32 H 1.08997 * 110.25044 * 97.46354 * 17 15 4 33 33 H 1.08998 * 110.24244 * 335.46497 * 17 15 4 34 34 H 0.97003 * 124.35232 * 196.74782 * 18 17 15 35 35 H 1.09004 * 110.48776 * 225.06682 * 21 19 18 36 36 H 1.08999 * 110.48887 * 102.42864 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1231 -0.6170 1.3124 6 6 1.6744 -2.2046 1.1667 7 6 2.3741 -2.8296 -0.0126 8 1 3.0605 -2.2436 -0.6059 9 6 2.1383 -4.1494 -0.3342 10 7 1.3029 -4.8631 0.3886 11 14 3.0052 -4.9237 -1.7964 12 1 4.4745 -4.8618 -1.5905 13 1 2.5827 -6.3413 -1.9286 14 1 2.6469 -4.1837 -3.0331 15 6 1.3951 -0.1055 2.4926 16 1 0.3081 -0.1644 2.4361 17 6 1.8600 1.3542 2.6912 18 7 1.9778 1.5335 4.1430 19 6 2.0192 0.3502 4.7794 20 8 2.1218 0.2103 5.9798 21 6 1.9197 -0.7815 3.7805 22 1 -0.3633 0.4143 -0.9405 23 1 -0.3633 -1.0216 0.1115 24 1 -0.3633 0.6073 0.8290 25 1 1.8934 -0.5139 -0.8899 26 1 3.0961 1.4545 0.2696 27 1 1.9139 1.8725 -0.9936 28 1 1.4735 2.0282 0.7239 29 1 1.9862 -2.7071 2.0823 30 1 0.5960 -2.3069 1.0453 31 1 1.1367 -5.7915 0.1621 32 1 1.1206 2.0443 2.2848 33 1 2.8264 1.5107 2.2121 34 1 2.0242 2.3952 4.5861 35 1 1.2155 -1.5371 4.1289 36 1 2.9005 -1.2242 3.6066 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260534579.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:59 Heat of formation + Delta-G solvation = -58.787812 kcal Electronic energy + Delta-G solvation = -16280.412084 eV Core-core repulsion = 13763.605125 eV Total energy + Delta-G solvation = -2516.806959 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.26357 -37.66046 -35.17297 -32.80504 -31.36217 -29.01633 -27.55427 -26.40298 -24.87791 -21.84680 -20.96448 -20.16462 -18.42215 -17.19276 -16.20772 -15.62110 -14.81295 -14.63846 -14.45889 -13.84000 -13.48549 -13.25904 -12.97985 -12.55256 -12.19485 -11.80248 -11.64445 -11.30741 -11.21023 -11.08102 -10.73939 -10.62834 -10.56667 -10.23094 -9.98867 -9.63779 -9.39687 -9.12043 -8.92914 -8.91082 -8.33960 -6.00647 -4.01933 2.85364 3.31734 3.37269 3.38819 3.58380 4.44530 4.73316 4.86715 5.04355 5.35176 5.36031 5.50437 5.64453 5.65198 5.73670 5.81839 6.02656 6.08708 6.16910 6.26661 6.29136 6.34281 6.47632 6.68178 6.76761 6.91909 6.98383 7.04922 7.14685 7.20002 7.67775 7.80167 7.99429 8.41168 8.46991 9.04004 9.61581 11.10391 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029744 B = 0.007965 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.127717 B = 3514.555558 C = 4098.932373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.161 4.161 4 C -0.066 4.066 5 H 0.060 0.940 6 C 0.025 3.975 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.887 3.113 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.278 1.278 15 C -0.094 4.094 16 H 0.089 0.911 17 C 0.098 3.902 18 N -0.738 5.738 19 C 0.518 3.482 20 O -0.550 6.550 21 C -0.149 4.149 22 H 0.040 0.960 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.016 0.984 30 H 0.024 0.976 31 H 0.260 0.740 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.402 0.598 35 H 0.101 0.899 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.367 12.274 0.641 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.218 4.218 4 C -0.084 4.084 5 H 0.079 0.921 6 C -0.011 4.011 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.143 4.143 10 N -0.534 5.534 11 Si 0.715 3.285 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.113 4.113 16 H 0.107 0.893 17 C -0.025 4.025 18 N -0.393 5.393 19 C 0.306 3.694 20 O -0.428 6.428 21 C -0.189 4.189 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.239 0.761 35 H 0.120 0.880 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.402 11.899 1.216 11.968 hybrid contribution 0.480 -0.126 -0.770 0.916 sum 0.079 11.773 0.447 11.782 Atomic orbital electron populations 1.21897 0.96115 1.02480 0.99693 1.21060 0.95369 0.93978 0.99993 1.22352 1.00662 0.97880 1.00872 1.21312 0.98286 0.98518 0.90321 0.92143 1.19200 0.97386 0.87665 0.96896 1.21167 1.25529 0.95759 1.12921 0.92722 1.24985 0.95319 0.97456 0.96553 1.69943 1.35493 1.08637 1.39282 0.86744 0.80071 0.78343 0.83340 1.20360 1.21404 1.20341 1.22362 1.01466 0.91967 0.95470 0.89301 1.22810 1.01694 0.98750 0.79266 1.46430 1.75359 1.08381 1.09163 1.21247 0.73905 0.85925 0.88372 1.90704 1.50984 1.86085 1.14992 1.22423 1.05047 0.96996 0.94391 0.94100 0.91286 0.93845 0.89757 0.93033 0.93783 0.92484 0.96560 0.95731 0.93008 0.90382 0.90571 0.76051 0.88045 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.34 37.16 0.31 -1.90 16 2 C -0.09 -1.37 2.57 -90.62 -0.23 -1.60 16 3 C -0.16 -2.00 7.72 37.16 0.29 -1.72 16 4 C -0.07 -1.14 1.13 -90.62 -0.10 -1.24 16 5 H 0.06 1.08 7.97 -51.93 -0.41 0.66 16 6 C 0.03 0.58 4.18 -27.89 -0.12 0.47 16 7 C -0.52 -13.39 8.22 -34.44 -0.28 -13.67 16 8 H 0.05 1.38 7.11 -52.49 -0.37 1.01 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 10 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 11 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 C -0.09 -1.38 2.15 -88.99 -0.19 -1.57 16 16 H 0.09 1.31 6.44 -51.93 -0.33 0.98 16 17 C 0.10 1.16 5.37 -3.13 -0.02 1.15 16 18 N -0.74 -9.36 6.24 -59.21 -0.37 -9.73 16 19 C 0.52 8.43 8.43 -10.86 -0.09 8.34 16 20 O -0.55 -10.95 18.03 5.55 0.10 -10.85 16 21 C -0.15 -2.37 5.33 -26.74 -0.14 -2.51 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.24 6.31 -51.93 -0.33 0.91 16 24 H 0.04 0.57 6.58 -51.93 -0.34 0.23 16 25 H 0.08 1.57 6.73 -51.93 -0.35 1.22 16 26 H 0.05 0.62 7.13 -51.93 -0.37 0.25 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.61 4.72 -51.93 -0.25 0.37 16 29 H 0.02 0.40 7.17 -51.93 -0.37 0.03 16 30 H 0.02 0.60 6.37 -51.93 -0.33 0.27 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.08 0.79 6.43 -51.93 -0.33 0.45 16 33 H 0.08 0.87 6.15 -51.93 -0.32 0.55 16 34 H 0.40 4.22 8.96 -40.82 -0.37 3.86 16 35 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.11 1.77 7.80 -51.93 -0.41 1.36 16 LS Contribution 275.96 15.07 4.16 4.16 Total: -1.00 -30.03 275.96 -6.36 -36.39 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.29 Total: 1.93 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.68 Total: -12.78 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.37 Total: -34.78 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.10 Total: -10.85 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.03 -6.36 -36.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260534579.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.398 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds