Wall clock time and date at job start Mon Mar 30 2020 03:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46745 * 2 1 4 4 C 1.52999 * 109.46968 * 240.00302 * 2 1 3 5 5 H 1.08997 * 109.47155 * 307.37882 * 4 2 1 6 6 C 1.53008 * 109.47333 * 67.37974 * 4 2 1 7 7 C 1.50703 * 109.46725 * 291.85516 * 6 4 2 8 8 H 1.08003 * 120.00012 * 354.48191 * 7 6 4 9 9 C 1.37875 * 119.99930 * 174.47789 * 7 6 4 10 10 N 1.31519 * 120.00006 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00000 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47115 * 60.00364 * 11 9 7 13 13 H 1.48499 * 109.47146 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.46999 * 299.99851 * 11 9 7 15 15 C 1.53006 * 109.47101 * 187.37567 * 4 2 1 16 16 H 1.08998 * 110.85613 * 300.31789 * 15 4 2 17 17 C 1.54476 * 110.96799 * 176.52634 * 15 4 2 18 18 N 1.46821 * 105.44431 * 216.49627 * 17 15 4 19 19 C 1.34425 * 111.31494 * 16.96053 * 18 17 15 20 20 O 1.21279 * 124.93790 * 179.58669 * 19 18 17 21 21 C 1.51279 * 110.11764 * 359.63177 * 19 18 17 22 22 H 1.08997 * 109.47340 * 47.44920 * 1 2 3 23 23 H 1.09005 * 109.46767 * 167.45225 * 1 2 3 24 24 H 1.09001 * 109.47069 * 287.45004 * 1 2 3 25 25 H 1.08994 * 109.47617 * 120.00025 * 2 1 3 26 26 H 1.09001 * 109.46615 * 186.76213 * 3 2 1 27 27 H 1.08995 * 109.47260 * 306.76051 * 3 2 1 28 28 H 1.08997 * 109.47287 * 66.76708 * 3 2 1 29 29 H 1.08998 * 109.47021 * 51.85416 * 6 4 2 30 30 H 1.08999 * 109.47015 * 171.85895 * 6 4 2 31 31 H 0.96990 * 120.00135 * 179.97438 * 10 9 7 32 32 H 1.09001 * 110.25144 * 335.46689 * 17 15 4 33 33 H 1.08995 * 110.24685 * 97.46938 * 17 15 4 34 34 H 0.97004 * 124.33470 * 197.00195 * 18 17 15 35 35 H 1.09002 * 110.48128 * 225.07127 * 21 19 18 36 36 H 1.08995 * 110.59992 * 102.47357 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.5729 -1.7036 -1.3178 6 6 1.6869 0.0991 -2.4917 7 6 0.1931 0.0910 -2.6910 8 1 -0.4333 -0.5169 -2.0551 9 6 -0.3739 0.8598 -3.6853 10 7 0.3889 1.6005 -4.4594 11 14 -2.2254 0.8502 -3.9320 12 1 -2.8925 1.3198 -2.6912 13 1 -2.5797 1.7537 -5.0560 14 1 -2.6760 -0.5297 -4.2446 15 6 3.5588 -0.8836 -1.1602 16 1 4.0491 0.0870 -1.0851 17 6 4.1006 -1.6850 -2.3645 18 7 5.1924 -2.5070 -1.8278 19 6 5.1287 -2.5894 -0.4876 20 8 5.9036 -3.2115 0.2077 21 6 3.9491 -1.7942 0.0271 22 1 -0.3634 0.6949 -0.7570 23 1 -0.3633 -1.0032 -0.2233 24 1 -0.3633 0.3082 0.9804 25 1 1.8934 -0.5138 0.8899 26 1 3.1232 1.4449 -0.1210 27 1 1.5812 1.9901 -0.8233 28 1 1.7788 1.9202 0.9443 29 1 2.0302 1.1251 -2.3592 30 1 2.1723 -0.3367 -3.3649 31 1 -0.0099 2.1410 -5.1591 32 1 3.3177 -2.3212 -2.7774 33 1 4.4790 -1.0069 -3.1293 34 1 5.8728 -2.9350 -2.3708 35 1 4.2408 -1.1936 0.8887 36 1 3.1238 -2.4570 0.2869 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260534583.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:01 Heat of formation + Delta-G solvation = -77.459315 kcal Electronic energy + Delta-G solvation = -16286.701842 eV Core-core repulsion = 13769.085226 eV Total energy + Delta-G solvation = -2517.616616 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.39807 -38.98473 -36.80535 -34.48031 -32.42498 -30.66913 -28.57649 -27.73101 -26.50031 -23.74708 -22.03728 -21.25921 -19.57263 -18.53114 -18.04473 -17.29387 -16.34898 -16.02848 -15.69719 -15.05843 -14.72521 -14.54024 -14.14426 -13.95384 -13.80915 -13.34180 -12.92956 -12.73981 -12.63137 -12.48833 -12.31356 -12.13244 -11.94192 -11.89594 -11.21030 -11.08902 -11.01303 -10.61393 -10.42259 -10.24467 -10.06593 -8.03526 -6.03083 1.45624 1.47015 1.52436 1.58126 2.48526 2.50844 3.31685 3.50537 3.64645 3.88454 4.18896 4.36910 4.44077 4.54744 4.71856 4.75935 4.79425 4.96676 5.03334 5.07076 5.11374 5.32217 5.35877 5.39562 5.43526 5.53436 5.68371 5.80638 5.84050 5.95400 6.03945 6.07559 6.11076 6.48458 7.09855 7.27494 7.59105 9.07957 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036661 B = 0.007523 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.570650 B = 3720.837275 C = 4087.370500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.073 4.073 3 C -0.141 4.141 4 C -0.058 4.058 5 H 0.060 0.940 6 C 0.028 3.972 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.935 3.065 12 H -0.270 1.270 13 H -0.295 1.295 14 H -0.273 1.273 15 C -0.088 4.088 16 H 0.090 0.910 17 C 0.107 3.893 18 N -0.720 5.720 19 C 0.515 3.485 20 O -0.590 6.590 21 C -0.142 4.142 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.010 0.990 30 H -0.006 1.006 31 H 0.255 0.745 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.414 0.586 35 H 0.111 0.889 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.173 -3.856 6.471 8.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.092 4.092 3 C -0.198 4.198 4 C -0.077 4.077 5 H 0.078 0.922 6 C -0.009 4.009 7 C -0.548 4.548 8 H 0.093 0.907 9 C -0.194 4.194 10 N -0.577 5.577 11 Si 0.762 3.238 12 H -0.195 1.195 13 H -0.221 1.221 14 H -0.198 1.198 15 C -0.107 4.107 16 H 0.108 0.892 17 C -0.017 4.017 18 N -0.374 5.374 19 C 0.303 3.697 20 O -0.472 6.472 21 C -0.182 4.182 22 H 0.081 0.919 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.013 0.987 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.253 0.747 35 H 0.130 0.870 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.453 -3.996 6.734 9.008 hybrid contribution -0.764 0.115 -1.040 1.296 sum 3.689 -3.881 5.694 7.816 Atomic orbital electron populations 1.22189 0.96202 1.01631 1.00475 1.20921 0.95469 0.95887 0.96897 1.21850 1.00570 0.96718 1.00679 1.21160 0.91463 0.98895 0.96189 0.92186 1.19155 0.94736 0.95011 0.91984 1.21943 0.94353 1.24283 1.14187 0.90701 1.25668 1.00965 0.96286 0.96499 1.70062 1.36311 1.30144 1.21185 0.85951 0.82482 0.77806 0.77533 1.19502 1.22117 1.19809 1.22202 0.97283 0.98432 0.92763 0.89162 1.22233 0.88778 0.93664 0.97022 1.46314 1.30988 1.52460 1.07623 1.21365 0.85704 0.79698 0.82930 1.90690 1.47531 1.46757 1.62202 1.22424 0.96680 0.99146 0.99957 0.91851 0.93732 0.93769 0.90548 0.92459 0.94384 0.92718 0.97181 0.98734 0.93588 0.90728 0.89710 0.74679 0.87042 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 7.56 71.98 0.54 -4.44 16 2 C -0.07 -2.24 2.61 -10.79 -0.03 -2.26 16 3 C -0.14 -4.38 8.32 71.98 0.60 -3.78 16 4 C -0.06 -1.91 1.10 -10.79 -0.01 -1.92 16 5 H 0.06 2.00 8.00 -2.39 -0.02 1.98 16 6 C 0.03 1.23 4.07 29.85 0.12 1.35 16 7 C -0.51 -25.10 6.55 25.60 0.17 -24.93 16 8 H 0.08 3.52 5.14 -2.91 -0.01 3.50 16 9 C 0.00 0.13 5.46 84.65 0.46 0.59 16 10 N -0.93 -53.29 13.29 21.45 0.28 -53.01 16 11 Si 0.94 42.03 29.54 68.60 2.03 44.05 16 12 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 13 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 15 C -0.09 -2.37 2.44 -9.73 -0.02 -2.39 16 16 H 0.09 2.43 6.59 -2.39 -0.02 2.42 16 17 C 0.11 2.76 6.24 86.82 0.54 3.31 16 18 N -0.72 -17.74 6.24 -459.69 -2.87 -20.61 16 19 C 0.52 14.91 8.43 87.90 0.74 15.65 16 20 O -0.59 -21.49 18.03 -3.03 -0.05 -21.54 16 21 C -0.14 -3.48 5.35 30.59 0.16 -3.31 16 22 H 0.06 2.58 5.45 -2.39 -0.01 2.57 16 23 H 0.04 1.47 7.30 -2.38 -0.02 1.45 16 24 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.08 1.93 7.21 -2.39 -0.02 1.92 16 26 H 0.06 1.60 6.41 -2.39 -0.02 1.59 16 27 H 0.04 1.45 6.48 -2.39 -0.02 1.44 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.01 0.48 6.00 -2.39 -0.01 0.46 16 30 H -0.01 -0.27 7.16 -2.39 -0.02 -0.28 16 31 H 0.26 14.11 8.31 -92.72 -0.77 13.34 16 32 H 0.07 2.02 7.88 -2.39 -0.02 2.00 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.41 8.65 8.96 -92.71 -0.83 7.82 16 35 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.11 2.60 7.88 -2.39 -0.02 2.58 16 Total: -1.00 -61.03 277.88 2.91 -58.12 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.24 Total: 15.12 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 3.28 Total: -22.14 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -2.58 Total: -73.61 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.05 Total: -21.54 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -61.03 2.91 -58.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260534583.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.335 kcal (2) G-P(sol) polarization free energy of solvation -61.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds