Wall clock time and date at job start Mon Mar 30 2020 03:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47207 * 2 1 4 4 C 1.52999 * 109.47325 * 120.00128 * 2 1 3 5 5 H 1.09002 * 109.47312 * 204.09452 * 4 2 1 6 6 C 1.50698 * 109.46863 * 84.09509 * 4 2 1 7 7 H 1.08002 * 120.00303 * 245.53265 * 6 4 2 8 8 C 1.37873 * 120.00002 * 65.54063 * 6 4 2 9 9 N 1.31518 * 120.00219 * 191.48484 * 8 6 4 10 10 Si 1.86797 * 120.00279 * 11.48395 * 8 6 4 11 11 H 1.48501 * 109.47257 * 85.15358 * 10 8 6 12 12 H 1.48505 * 109.47059 * 325.15753 * 10 8 6 13 13 H 1.48493 * 109.47630 * 205.15292 * 10 8 6 14 14 C 1.53002 * 109.47122 * 324.09989 * 4 2 1 15 15 H 1.08998 * 109.40046 * 59.34717 * 14 4 2 16 16 C 1.53077 * 109.39574 * 299.52527 * 14 4 2 17 17 C 1.53347 * 108.41950 * 190.97019 * 16 14 4 18 18 C 1.52920 * 108.67651 * 67.53339 * 17 16 14 19 19 N 1.45758 * 110.48631 * 309.24562 * 18 17 16 20 20 C 1.33237 * 124.06821 * 19.15344 * 19 18 17 21 21 O 1.21285 * 118.15395 * 177.71450 * 20 19 18 22 22 H 1.08998 * 109.47178 * 306.09793 * 1 2 3 23 23 H 1.09004 * 109.47102 * 66.10368 * 1 2 3 24 24 H 1.09002 * 109.46692 * 186.10323 * 1 2 3 25 25 H 1.09003 * 109.47192 * 240.00601 * 2 1 3 26 26 H 1.08992 * 109.47740 * 185.39745 * 3 2 1 27 27 H 1.08997 * 109.47312 * 305.39991 * 3 2 1 28 28 H 1.09005 * 109.47051 * 65.39735 * 3 2 1 29 29 H 0.96998 * 120.00053 * 179.97438 * 9 8 6 30 30 H 1.08996 * 109.67508 * 310.70541 * 16 14 4 31 31 H 1.08997 * 109.67165 * 71.24102 * 16 14 4 32 32 H 1.09002 * 109.60213 * 187.28674 * 17 16 14 33 33 H 1.08996 * 109.60755 * 307.77150 * 17 16 14 34 34 H 1.09002 * 109.29818 * 69.55556 * 18 17 16 35 35 H 1.09000 * 109.30150 * 188.93084 * 18 17 16 36 36 H 0.96996 * 117.94605 * 199.07311 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.0457 -0.3729 1.4848 6 6 2.0697 -2.2063 0.9948 7 1 1.4162 -2.8626 1.5505 8 6 2.9311 -2.7273 0.0528 9 7 2.8051 -3.9783 -0.3331 10 14 4.2773 -1.6565 -0.6755 11 1 5.4662 -1.6827 0.2138 12 1 3.7852 -0.2611 -0.8030 13 1 4.6507 -2.1741 -2.0163 14 6 1.1084 -0.4239 2.4259 15 1 0.1009 -0.7624 2.1844 16 6 1.0887 1.0837 2.6903 17 6 0.3794 1.3319 4.0270 18 6 1.2470 0.7695 5.1537 19 7 1.6329 -0.6056 4.8624 20 6 1.5993 -1.1486 3.6462 21 8 1.9847 -2.2915 3.5189 22 1 -0.3633 0.6054 0.8303 23 1 -0.3633 0.4163 -0.9396 24 1 -0.3633 -1.0219 0.1093 25 1 1.8934 -0.5137 -0.8901 26 1 3.1257 1.4441 -0.0967 27 1 1.5999 1.9835 -0.8376 28 1 1.7578 1.9276 0.9344 29 1 3.4110 -4.3447 -0.9961 30 1 2.1101 1.4607 2.7413 31 1 0.5497 1.5896 1.8894 32 1 0.2392 2.4030 4.1733 33 1 -0.5886 0.8309 4.0260 34 1 2.1434 1.3810 5.2576 35 1 0.6861 0.7962 6.0879 36 1 1.9339 -1.1591 5.5998 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260534792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:25 Heat of formation + Delta-G solvation = -63.109454 kcal Electronic energy + Delta-G solvation = -16973.084959 eV Core-core repulsion = 14456.090599 eV Total energy + Delta-G solvation = -2516.994359 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.46761 -38.39879 -37.04558 -34.23811 -32.99185 -31.02577 -29.10455 -27.98800 -25.30064 -23.70195 -23.24662 -20.59755 -19.64576 -18.50631 -17.89276 -17.26329 -16.54530 -16.02988 -15.44224 -15.15329 -14.92974 -14.64856 -14.37357 -14.08130 -13.93280 -13.13967 -12.97042 -12.80515 -12.56726 -12.48681 -12.15520 -12.06629 -11.74202 -11.64670 -11.40125 -11.19891 -10.97368 -10.68360 -10.44563 -10.04111 -9.82074 -8.11159 -6.04327 1.34289 1.36343 1.46086 1.97337 2.45037 2.59269 3.22037 3.93192 3.97489 4.05454 4.14220 4.37050 4.43066 4.47351 4.64983 4.70008 4.77640 4.95302 4.96665 5.01326 5.02671 5.12626 5.16238 5.23109 5.36439 5.41169 5.52997 5.57264 5.73884 5.79870 5.95813 6.13849 6.49077 6.65727 7.01719 7.51507 7.62587 9.06667 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027807 B = 0.012231 C = 0.010077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.708604 B = 2288.714303 C = 2777.892598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 C -0.163 4.163 4 C 0.038 3.962 5 H 0.010 0.990 6 C -0.468 4.468 7 H 0.033 0.967 8 C -0.005 4.005 9 N -0.964 5.964 10 Si 0.913 3.087 11 H -0.293 1.293 12 H -0.201 1.201 13 H -0.298 1.298 14 C -0.081 4.081 15 H 0.091 0.909 16 C -0.126 4.126 17 C -0.133 4.133 18 C 0.105 3.895 19 N -0.726 5.726 20 C 0.502 3.498 21 O -0.581 6.581 22 H 0.080 0.920 23 H 0.057 0.943 24 H 0.028 0.972 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.255 0.745 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.365 18.968 8.430 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C -0.219 4.219 4 C 0.019 3.981 5 H 0.028 0.972 6 C -0.506 4.506 7 H 0.051 0.949 8 C -0.198 4.198 9 N -0.608 5.608 10 Si 0.738 3.262 11 H -0.220 1.220 12 H -0.122 1.122 13 H -0.225 1.225 14 C -0.102 4.102 15 H 0.109 0.891 16 C -0.163 4.163 17 C -0.170 4.170 18 C -0.018 4.018 19 N -0.379 5.379 20 C 0.290 3.710 21 O -0.460 6.460 22 H 0.099 0.901 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -5.195 18.436 8.067 20.784 hybrid contribution 1.176 -1.265 -0.224 1.742 sum -4.019 17.171 7.842 19.300 Atomic orbital electron populations 1.21867 0.94735 1.00672 1.01967 1.21426 0.96750 0.95774 0.97524 1.22394 1.00129 0.95481 1.03917 1.19001 0.93655 0.93587 0.91881 0.97180 1.21360 1.19829 0.92656 1.16754 0.94917 1.25829 1.00351 0.96120 0.97471 1.70134 1.39622 1.17157 1.33886 0.86451 0.79695 0.83438 0.76571 1.22002 1.12247 1.22502 1.21169 1.00706 0.96566 0.91804 0.89132 1.22229 1.02152 0.92676 0.99216 1.21961 0.98493 1.03638 0.92952 1.21660 0.99795 0.80564 0.99814 1.45656 1.68108 1.15606 1.08490 1.20803 0.77357 0.86905 0.85952 1.90843 1.48383 1.21262 1.85486 0.90105 0.92445 0.95321 0.94521 0.94330 0.91775 0.88847 0.93683 0.91070 0.87733 0.86405 0.91264 0.90760 0.88242 0.77190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 7.81 71.98 0.56 -3.98 16 2 C -0.10 -3.73 1.64 -10.79 -0.02 -3.75 16 3 C -0.16 -4.77 8.52 71.98 0.61 -4.15 16 4 C 0.04 1.74 0.86 -11.54 -0.01 1.73 16 5 H 0.01 0.48 6.71 -2.39 -0.02 0.47 16 6 C -0.47 -28.42 7.17 25.60 0.18 -28.23 16 7 H 0.03 2.30 6.66 -2.91 -0.02 2.28 16 8 C 0.00 -0.29 5.23 84.65 0.44 0.16 16 9 N -0.96 -66.22 13.96 21.45 0.30 -65.92 16 10 Si 0.91 46.74 25.78 68.60 1.77 48.51 16 11 H -0.29 -15.24 7.11 99.48 0.71 -14.53 16 12 H -0.20 -8.73 4.06 99.48 0.40 -8.32 16 13 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 14 C -0.08 -3.03 1.46 -11.68 -0.02 -3.05 16 15 H 0.09 3.50 6.36 -2.39 -0.02 3.48 16 16 C -0.13 -3.00 3.29 30.74 0.10 -2.90 16 17 C -0.13 -2.18 6.02 30.68 0.18 -2.00 16 18 C 0.10 1.82 7.17 86.49 0.62 2.44 16 19 N -0.73 -21.13 5.44 -467.46 -2.54 -23.68 16 20 C 0.50 20.85 7.28 87.73 0.64 21.49 16 21 O -0.58 -32.33 14.42 -3.04 -0.04 -32.37 16 22 H 0.08 2.14 4.90 -2.39 -0.01 2.13 16 23 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.03 1.13 7.76 -2.39 -0.02 1.12 16 25 H 0.04 1.66 5.32 -2.39 -0.01 1.65 16 26 H 0.04 1.20 6.88 -2.39 -0.02 1.18 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.09 2.19 3.90 -2.38 -0.01 2.18 16 29 H 0.25 16.54 8.31 -92.71 -0.77 15.77 16 30 H 0.07 1.69 7.56 -2.39 -0.02 1.67 16 31 H 0.10 2.12 4.30 -2.39 -0.01 2.11 16 32 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.39 10.83 8.80 -92.71 -0.82 10.01 16 Total: -1.00 -84.21 260.62 2.75 -81.46 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -0.03 Total: 14.25 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 3.30 Total: -22.24 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -2.25 Total: -89.60 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.04 Total: -32.37 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.77 Total: 48.51 kcal Total: -84.21 2.75 -81.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260534792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.348 kcal (2) G-P(sol) polarization free energy of solvation -84.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds