Wall clock time and date at job start Mon Mar 30 2020 03:50:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 O 1.21288 * 120.00025 * 2 1
4 4 N 1.34771 * 120.00208 * 180.02562 * 2 1 3
5 5 C 1.47585 * 134.49611 * 180.02562 * 4 2 1
6 6 C 1.53950 * 86.11770 * 155.35740 * 5 4 2
7 7 C 1.53004 * 113.73994 * 137.95380 * 6 5 4
8 8 H 1.09005 * 109.47132 * 299.99684 * 7 6 5
9 9 C 1.50699 * 109.47102 * 59.99813 * 7 6 5
10 10 H 1.07996 * 120.00124 * 5.13691 * 9 7 6
11 11 C 1.37882 * 119.99815 * 185.13984 * 9 7 6
12 12 N 1.31513 * 119.99661 * 355.57212 * 11 9 7
13 13 Si 1.86802 * 119.99992 * 175.57229 * 11 9 7
14 14 H 1.48497 * 109.46950 * 359.97438 * 13 11 9
15 15 H 1.48504 * 109.46779 * 119.99692 * 13 11 9
16 16 H 1.48493 * 109.47192 * 239.99930 * 13 11 9
17 17 C 1.53001 * 109.46941 * 180.02562 * 7 6 5
18 18 C 1.53002 * 109.46508 * 305.12867 * 17 7 6
19 19 C 1.52991 * 109.47248 * 65.13281 * 17 7 6
20 20 C 1.47585 * 134.49417 * 359.97438 * 4 2 1
21 21 H 1.09000 * 109.47166 * 180.02562 * 1 2 3
22 22 H 1.09000 * 109.47104 * 299.99789 * 1 2 3
23 23 H 1.09000 * 109.47003 * 59.99728 * 1 2 3
24 24 H 1.08990 * 113.76985 * 41.05506 * 5 4 2
25 25 H 1.09008 * 113.87041 * 269.67111 * 5 4 2
26 26 H 1.08994 * 113.73834 * 269.15328 * 6 5 4
27 27 H 0.97003 * 119.99275 * 180.02562 * 12 11 9
28 28 H 1.08997 * 109.46891 * 185.13789 * 17 7 6
29 29 H 1.09007 * 109.46615 * 179.97438 * 18 17 7
30 30 H 1.09002 * 109.47216 * 60.00735 * 18 17 7
31 31 H 1.08998 * 109.47416 * 300.00176 * 18 17 7
32 32 H 1.08997 * 109.47656 * 54.25792 * 19 17 7
33 33 H 1.08998 * 109.46938 * 174.26050 * 19 17 7
34 34 H 1.09001 * 109.47202 * 294.25926 * 19 17 7
35 35 H 1.09003 * 113.77271 * 90.33554 * 20 4 2
36 36 H 1.09006 * 113.76635 * 318.94270 * 20 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0504 0.0000
4 7 2.1809 -1.1671 -0.0005
5 6 3.6098 -1.5365 -0.0002
6 6 3.1592 -2.8625 0.6392
7 6 3.8700 -4.0928 0.0716
8 1 3.6727 -4.1653 -0.9980
9 6 5.3540 -3.9661 0.3013
10 1 5.7429 -3.1373 0.8740
11 6 6.2151 -4.9084 -0.2199
12 7 5.7367 -5.9634 -0.8424
13 14 8.0613 -4.6863 -0.0418
14 1 8.3397 -3.4263 0.6930
15 1 8.6276 -5.8344 0.7109
16 1 8.6843 -4.6215 -1.3882
17 6 3.3505 -5.3501 0.7718
18 6 3.5106 -5.1938 2.2854
19 6 1.8717 -5.5484 0.4331
20 6 1.7864 -2.5893 -0.0007
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 4.2231 -0.9187 0.6555
25 1 4.0358 -1.6518 -0.9970
26 1 3.1485 -2.8428 1.7289
27 1 6.3426 -6.6265 -1.2088
28 1 3.9200 -6.2158 0.4337
29 1 3.1401 -6.0894 2.7843
30 1 2.9411 -4.3281 2.6236
31 1 4.5641 -5.0526 2.5266
32 1 1.7449 -5.5576 -0.6494
33 1 1.5281 -6.4962 0.8473
34 1 1.2886 -4.7325 0.8602
35 1 1.6742 -3.0140 -0.9983
36 1 0.9443 -2.8117 0.6548
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260634579.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:50:19
Heat of formation + Delta-G solvation = -20.939427 kcal
Electronic energy + Delta-G solvation = -16244.803755 eV
Core-core repulsion = 13729.638025 eV
Total energy + Delta-G solvation = -2515.165730 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.89499 -37.71974 -35.20999 -32.09783 -30.75101 -28.62755 -26.97652 -25.98929
-25.24504 -23.19461 -20.77112 -18.46033 -18.20341 -16.55640 -16.38016 -15.34446
-15.13704 -14.53574 -14.26085 -13.59058 -12.92594 -12.81431 -12.53332 -12.37925
-12.10491 -12.05396 -11.78395 -11.56537 -11.21623 -10.97636 -10.75514 -10.64276
-10.35876 -10.13872 -9.84177 -9.56379 -9.48372 -8.92259 -8.70161 -8.34353
-8.21488 -6.03524 -4.08122 2.93853 3.27634 3.31338 3.37183 3.41001
4.40767 4.80761 5.21467 5.25694 5.29382 5.45588 5.61263 5.75760
5.77493 5.88554 6.05204 6.13722 6.16783 6.24127 6.26980 6.36406
6.47574 6.60113 6.69607 6.80382 6.92403 6.99704 7.37070 7.49222
7.71146 7.86559 8.06289 8.16413 8.39378 8.49145 8.95182 9.56500
11.02472
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.028847 B = 0.008457 C = 0.007059
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 970.396688 B = 3309.977764 C = 3965.404643
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.523 3.477
3 O -0.565 6.565
4 N -0.645 5.645
5 C 0.119 3.881
6 C -0.104 4.104
7 C 0.065 3.935
8 H 0.032 0.968
9 C -0.507 4.507
10 H 0.056 0.944
11 C 0.064 3.936
12 N -0.888 5.888
13 Si 0.885 3.115
14 H -0.273 1.273
15 H -0.286 1.286
16 H -0.285 1.285
17 C -0.092 4.092
18 C -0.131 4.131
19 C -0.146 4.146
20 C 0.099 3.901
21 H 0.073 0.927
22 H 0.088 0.912
23 H 0.089 0.911
24 H 0.070 0.930
25 H 0.087 0.913
26 H 0.091 0.909
27 H 0.259 0.741
28 H 0.098 0.902
29 H 0.024 0.976
30 H 0.035 0.965
31 H 0.059 0.941
32 H 0.044 0.956
33 H 0.032 0.968
34 H 0.039 0.961
35 H 0.084 0.916
36 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.027 2.419 2.055 9.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.314 3.686
3 O -0.445 6.445
4 N -0.380 5.380
5 C -0.002 4.002
6 C -0.123 4.123
7 C 0.047 3.953
8 H 0.050 0.950
9 C -0.545 4.545
10 H 0.074 0.926
11 C -0.137 4.137
12 N -0.527 5.527
13 Si 0.713 3.287
14 H -0.198 1.198
15 H -0.212 1.212
16 H -0.211 1.211
17 C -0.111 4.111
18 C -0.188 4.188
19 C -0.203 4.203
20 C -0.023 4.023
21 H 0.092 0.908
22 H 0.107 0.893
23 H 0.108 0.892
24 H 0.088 0.912
25 H 0.105 0.895
26 H 0.109 0.891
27 H 0.069 0.931
28 H 0.116 0.884
29 H 0.043 0.957
30 H 0.053 0.947
31 H 0.078 0.922
32 H 0.063 0.937
33 H 0.051 0.949
34 H 0.058 0.942
35 H 0.102 0.898
36 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -8.766 3.007 1.961 9.473
hybrid contribution 0.959 -0.046 -0.005 0.960
sum -7.808 2.962 1.956 8.576
Atomic orbital electron populations
1.21780 0.92369 1.03883 1.04517 1.20438 0.90004 0.82314 0.75887
1.90678 1.70914 1.30888 1.52061 1.50487 1.10428 1.05449 1.71608
1.23216 0.81525 0.94059 1.01425 1.23319 0.92456 0.96414 1.00102
1.18716 0.93933 0.87544 0.95151 0.94959 1.21104 0.90848 1.09248
1.33332 0.92552 1.24915 0.98393 0.95156 0.95264 1.69890 1.34370
1.10495 1.37898 0.86650 0.86180 0.78106 0.77775 1.19776 1.21191
1.21129 1.21175 0.92879 1.02989 0.94082 1.21760 1.01597 0.98141
0.97285 1.22009 0.98917 0.99191 1.00216 1.23613 0.99619 0.78091
1.00951 0.90806 0.89313 0.89211 0.91169 0.89481 0.89099 0.93090
0.88394 0.95673 0.94653 0.92213 0.93726 0.94853 0.94181 0.89802
0.91026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.94 10.34 36.00 0.37 -1.57 16
2 C 0.52 8.99 8.17 -10.99 -0.09 8.90 16
3 O -0.57 -12.03 17.83 5.55 0.10 -11.94 16
4 N -0.64 -11.03 3.61 -178.35 -0.64 -11.68 16
5 C 0.12 2.23 7.79 -2.97 -0.02 2.21 16
6 C -0.10 -1.89 2.71 -89.71 -0.24 -2.13 16
7 C 0.07 1.41 1.36 -91.77 -0.12 1.28 16
8 H 0.03 0.77 7.94 -51.93 -0.41 0.36 16
9 C -0.51 -12.47 7.01 -34.44 -0.24 -12.71 16
10 H 0.06 1.40 7.64 -52.49 -0.40 1.00 16
11 C 0.06 1.65 5.35 -17.82 -0.10 1.55 16
12 N -0.89 -23.70 11.51 55.43 0.64 -23.06 16
13 Si 0.88 20.39 29.54 -169.99 -5.02 15.37 16
14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16
15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
16 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16
17 C -0.09 -1.89 2.58 -90.62 -0.23 -2.13 16
18 C -0.13 -2.48 8.59 37.16 0.32 -2.16 16
19 C -0.15 -2.48 8.33 37.15 0.31 -2.17 16
20 C 0.10 1.52 5.75 -2.99 -0.02 1.50 16
21 H 0.07 0.74 7.21 -51.93 -0.37 0.36 16
22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16
23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16
24 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16
25 H 0.09 1.69 8.10 -51.92 -0.42 1.27 16
26 H 0.09 1.66 6.00 -51.93 -0.31 1.35 16
27 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16
28 H 0.10 2.37 6.22 -51.93 -0.32 2.05 16
29 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16
30 H 0.03 0.61 6.13 -51.93 -0.32 0.29 16
31 H 0.06 1.24 7.39 -51.93 -0.38 0.86 16
32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16
33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.04 0.60 5.67 -51.93 -0.29 0.30 16
35 H 0.08 1.26 7.96 -51.93 -0.41 0.85 16
36 H 0.07 0.93 7.10 -51.93 -0.37 0.57 16
LS Contribution 286.32 15.07 4.31 4.31
Total: -1.00 -28.38 286.32 -6.37 -34.75
By element:
Atomic # 1 Polarization: 5.36 SS G_CDS: -5.69 Total: -0.33 kcal
Atomic # 6 Polarization: -7.36 SS G_CDS: -0.07 Total: -7.43 kcal
Atomic # 7 Polarization: -34.73 SS G_CDS: -0.01 Total: -34.74 kcal
Atomic # 8 Polarization: -12.03 SS G_CDS: 0.10 Total: -11.94 kcal
Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal
Total LS contribution 4.31 Total: 4.31 kcal
Total: -28.38 -6.37 -34.75 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260634579.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.814 kcal
(2) G-P(sol) polarization free energy of solvation -28.380 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.566 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.753 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.939 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds