Wall clock time and date at job start Mon Mar 30 2020 03:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21288 * 120.00025 * 2 1 4 4 N 1.34771 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.47585 * 134.49611 * 180.02562 * 4 2 1 6 6 C 1.53950 * 86.11770 * 155.35740 * 5 4 2 7 7 C 1.53004 * 113.73994 * 137.95380 * 6 5 4 8 8 H 1.09005 * 109.47132 * 299.99684 * 7 6 5 9 9 C 1.50699 * 109.47102 * 59.99813 * 7 6 5 10 10 H 1.07996 * 120.00124 * 5.13691 * 9 7 6 11 11 C 1.37882 * 119.99815 * 185.13984 * 9 7 6 12 12 N 1.31513 * 119.99661 * 355.57212 * 11 9 7 13 13 Si 1.86802 * 119.99992 * 175.57229 * 11 9 7 14 14 H 1.48497 * 109.46950 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46779 * 119.99692 * 13 11 9 16 16 H 1.48493 * 109.47192 * 239.99930 * 13 11 9 17 17 C 1.53001 * 109.46941 * 180.02562 * 7 6 5 18 18 C 1.53002 * 109.46508 * 305.12867 * 17 7 6 19 19 C 1.52991 * 109.47248 * 65.13281 * 17 7 6 20 20 C 1.47585 * 134.49417 * 359.97438 * 4 2 1 21 21 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47104 * 299.99789 * 1 2 3 23 23 H 1.09000 * 109.47003 * 59.99728 * 1 2 3 24 24 H 1.08990 * 113.76985 * 41.05506 * 5 4 2 25 25 H 1.09008 * 113.87041 * 269.67111 * 5 4 2 26 26 H 1.08994 * 113.73834 * 269.15328 * 6 5 4 27 27 H 0.97003 * 119.99275 * 180.02562 * 12 11 9 28 28 H 1.08997 * 109.46891 * 185.13789 * 17 7 6 29 29 H 1.09007 * 109.46615 * 179.97438 * 18 17 7 30 30 H 1.09002 * 109.47216 * 60.00735 * 18 17 7 31 31 H 1.08998 * 109.47416 * 300.00176 * 18 17 7 32 32 H 1.08997 * 109.47656 * 54.25792 * 19 17 7 33 33 H 1.08998 * 109.46938 * 174.26050 * 19 17 7 34 34 H 1.09001 * 109.47202 * 294.25926 * 19 17 7 35 35 H 1.09003 * 113.77271 * 90.33554 * 20 4 2 36 36 H 1.09006 * 113.76635 * 318.94270 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6098 -1.5365 -0.0002 6 6 3.1592 -2.8625 0.6392 7 6 3.8700 -4.0928 0.0716 8 1 3.6727 -4.1653 -0.9980 9 6 5.3540 -3.9661 0.3013 10 1 5.7429 -3.1373 0.8740 11 6 6.2151 -4.9084 -0.2199 12 7 5.7367 -5.9634 -0.8424 13 14 8.0613 -4.6863 -0.0418 14 1 8.3397 -3.4263 0.6930 15 1 8.6276 -5.8344 0.7109 16 1 8.6843 -4.6215 -1.3882 17 6 3.3505 -5.3501 0.7718 18 6 3.5106 -5.1938 2.2854 19 6 1.8717 -5.5484 0.4331 20 6 1.7864 -2.5893 -0.0007 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 4.2231 -0.9187 0.6555 25 1 4.0358 -1.6518 -0.9970 26 1 3.1485 -2.8428 1.7289 27 1 6.3426 -6.6265 -1.2088 28 1 3.9200 -6.2158 0.4337 29 1 3.1401 -6.0894 2.7843 30 1 2.9411 -4.3281 2.6236 31 1 4.5641 -5.0526 2.5266 32 1 1.7449 -5.5576 -0.6494 33 1 1.5281 -6.4962 0.8473 34 1 1.2886 -4.7325 0.8602 35 1 1.6742 -3.0140 -0.9983 36 1 0.9443 -2.8117 0.6548 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260634579.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:19 Heat of formation + Delta-G solvation = -20.939427 kcal Electronic energy + Delta-G solvation = -16244.803755 eV Core-core repulsion = 13729.638025 eV Total energy + Delta-G solvation = -2515.165730 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89499 -37.71974 -35.20999 -32.09783 -30.75101 -28.62755 -26.97652 -25.98929 -25.24504 -23.19461 -20.77112 -18.46033 -18.20341 -16.55640 -16.38016 -15.34446 -15.13704 -14.53574 -14.26085 -13.59058 -12.92594 -12.81431 -12.53332 -12.37925 -12.10491 -12.05396 -11.78395 -11.56537 -11.21623 -10.97636 -10.75514 -10.64276 -10.35876 -10.13872 -9.84177 -9.56379 -9.48372 -8.92259 -8.70161 -8.34353 -8.21488 -6.03524 -4.08122 2.93853 3.27634 3.31338 3.37183 3.41001 4.40767 4.80761 5.21467 5.25694 5.29382 5.45588 5.61263 5.75760 5.77493 5.88554 6.05204 6.13722 6.16783 6.24127 6.26980 6.36406 6.47574 6.60113 6.69607 6.80382 6.92403 6.99704 7.37070 7.49222 7.71146 7.86559 8.06289 8.16413 8.39378 8.49145 8.95182 9.56500 11.02472 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028847 B = 0.008457 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.396688 B = 3309.977764 C = 3965.404643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.523 3.477 3 O -0.565 6.565 4 N -0.645 5.645 5 C 0.119 3.881 6 C -0.104 4.104 7 C 0.065 3.935 8 H 0.032 0.968 9 C -0.507 4.507 10 H 0.056 0.944 11 C 0.064 3.936 12 N -0.888 5.888 13 Si 0.885 3.115 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.285 1.285 17 C -0.092 4.092 18 C -0.131 4.131 19 C -0.146 4.146 20 C 0.099 3.901 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.259 0.741 28 H 0.098 0.902 29 H 0.024 0.976 30 H 0.035 0.965 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.027 2.419 2.055 9.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.314 3.686 3 O -0.445 6.445 4 N -0.380 5.380 5 C -0.002 4.002 6 C -0.123 4.123 7 C 0.047 3.953 8 H 0.050 0.950 9 C -0.545 4.545 10 H 0.074 0.926 11 C -0.137 4.137 12 N -0.527 5.527 13 Si 0.713 3.287 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.111 4.111 18 C -0.188 4.188 19 C -0.203 4.203 20 C -0.023 4.023 21 H 0.092 0.908 22 H 0.107 0.893 23 H 0.108 0.892 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.766 3.007 1.961 9.473 hybrid contribution 0.959 -0.046 -0.005 0.960 sum -7.808 2.962 1.956 8.576 Atomic orbital electron populations 1.21780 0.92369 1.03883 1.04517 1.20438 0.90004 0.82314 0.75887 1.90678 1.70914 1.30888 1.52061 1.50487 1.10428 1.05449 1.71608 1.23216 0.81525 0.94059 1.01425 1.23319 0.92456 0.96414 1.00102 1.18716 0.93933 0.87544 0.95151 0.94959 1.21104 0.90848 1.09248 1.33332 0.92552 1.24915 0.98393 0.95156 0.95264 1.69890 1.34370 1.10495 1.37898 0.86650 0.86180 0.78106 0.77775 1.19776 1.21191 1.21129 1.21175 0.92879 1.02989 0.94082 1.21760 1.01597 0.98141 0.97285 1.22009 0.98917 0.99191 1.00216 1.23613 0.99619 0.78091 1.00951 0.90806 0.89313 0.89211 0.91169 0.89481 0.89099 0.93090 0.88394 0.95673 0.94653 0.92213 0.93726 0.94853 0.94181 0.89802 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.34 36.00 0.37 -1.57 16 2 C 0.52 8.99 8.17 -10.99 -0.09 8.90 16 3 O -0.57 -12.03 17.83 5.55 0.10 -11.94 16 4 N -0.64 -11.03 3.61 -178.35 -0.64 -11.68 16 5 C 0.12 2.23 7.79 -2.97 -0.02 2.21 16 6 C -0.10 -1.89 2.71 -89.71 -0.24 -2.13 16 7 C 0.07 1.41 1.36 -91.77 -0.12 1.28 16 8 H 0.03 0.77 7.94 -51.93 -0.41 0.36 16 9 C -0.51 -12.47 7.01 -34.44 -0.24 -12.71 16 10 H 0.06 1.40 7.64 -52.49 -0.40 1.00 16 11 C 0.06 1.65 5.35 -17.82 -0.10 1.55 16 12 N -0.89 -23.70 11.51 55.43 0.64 -23.06 16 13 Si 0.88 20.39 29.54 -169.99 -5.02 15.37 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 17 C -0.09 -1.89 2.58 -90.62 -0.23 -2.13 16 18 C -0.13 -2.48 8.59 37.16 0.32 -2.16 16 19 C -0.15 -2.48 8.33 37.15 0.31 -2.17 16 20 C 0.10 1.52 5.75 -2.99 -0.02 1.50 16 21 H 0.07 0.74 7.21 -51.93 -0.37 0.36 16 22 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 25 H 0.09 1.69 8.10 -51.92 -0.42 1.27 16 26 H 0.09 1.66 6.00 -51.93 -0.31 1.35 16 27 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 28 H 0.10 2.37 6.22 -51.93 -0.32 2.05 16 29 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.03 0.61 6.13 -51.93 -0.32 0.29 16 31 H 0.06 1.24 7.39 -51.93 -0.38 0.86 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.04 0.60 5.67 -51.93 -0.29 0.30 16 35 H 0.08 1.26 7.96 -51.93 -0.41 0.85 16 36 H 0.07 0.93 7.10 -51.93 -0.37 0.57 16 LS Contribution 286.32 15.07 4.31 4.31 Total: -1.00 -28.38 286.32 -6.37 -34.75 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.69 Total: -0.33 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -0.07 Total: -7.43 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.01 Total: -34.74 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.10 Total: -11.94 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.38 -6.37 -34.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260634579.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.814 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds