Wall clock time and date at job start Mon Mar 30 2020 03:50:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 O 1.21288 * 120.00025 * 2 1
4 4 N 1.34771 * 120.00208 * 180.02562 * 2 1 3
5 5 C 1.47585 * 134.49611 * 180.02562 * 4 2 1
6 6 C 1.53950 * 86.11770 * 155.35740 * 5 4 2
7 7 C 1.53004 * 113.73994 * 137.95380 * 6 5 4
8 8 H 1.09005 * 109.47132 * 299.99684 * 7 6 5
9 9 C 1.50699 * 109.47102 * 59.99813 * 7 6 5
10 10 H 1.07996 * 120.00124 * 5.13691 * 9 7 6
11 11 C 1.37882 * 119.99815 * 185.13984 * 9 7 6
12 12 N 1.31513 * 119.99661 * 355.57212 * 11 9 7
13 13 Si 1.86802 * 119.99992 * 175.57229 * 11 9 7
14 14 H 1.48497 * 109.46950 * 359.97438 * 13 11 9
15 15 H 1.48504 * 109.46779 * 119.99692 * 13 11 9
16 16 H 1.48493 * 109.47192 * 239.99930 * 13 11 9
17 17 C 1.53001 * 109.46941 * 180.02562 * 7 6 5
18 18 C 1.53002 * 109.46508 * 305.12867 * 17 7 6
19 19 C 1.52991 * 109.47248 * 65.13281 * 17 7 6
20 20 C 1.47585 * 134.49417 * 359.97438 * 4 2 1
21 21 H 1.09000 * 109.47166 * 180.02562 * 1 2 3
22 22 H 1.09000 * 109.47104 * 299.99789 * 1 2 3
23 23 H 1.09000 * 109.47003 * 59.99728 * 1 2 3
24 24 H 1.08990 * 113.76985 * 41.05506 * 5 4 2
25 25 H 1.09008 * 113.87041 * 269.67111 * 5 4 2
26 26 H 1.08994 * 113.73834 * 269.15328 * 6 5 4
27 27 H 0.97003 * 119.99275 * 180.02562 * 12 11 9
28 28 H 1.08997 * 109.46891 * 185.13789 * 17 7 6
29 29 H 1.09007 * 109.46615 * 179.97438 * 18 17 7
30 30 H 1.09002 * 109.47216 * 60.00735 * 18 17 7
31 31 H 1.08998 * 109.47416 * 300.00176 * 18 17 7
32 32 H 1.08997 * 109.47656 * 54.25792 * 19 17 7
33 33 H 1.08998 * 109.46938 * 174.26050 * 19 17 7
34 34 H 1.09001 * 109.47202 * 294.25926 * 19 17 7
35 35 H 1.09003 * 113.77271 * 90.33554 * 20 4 2
36 36 H 1.09006 * 113.76635 * 318.94270 * 20 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0504 0.0000
4 7 2.1809 -1.1671 -0.0005
5 6 3.6098 -1.5365 -0.0002
6 6 3.1592 -2.8625 0.6392
7 6 3.8700 -4.0928 0.0716
8 1 3.6727 -4.1653 -0.9980
9 6 5.3540 -3.9661 0.3013
10 1 5.7429 -3.1373 0.8740
11 6 6.2151 -4.9084 -0.2199
12 7 5.7367 -5.9634 -0.8424
13 14 8.0613 -4.6863 -0.0418
14 1 8.3397 -3.4263 0.6930
15 1 8.6276 -5.8344 0.7109
16 1 8.6843 -4.6215 -1.3882
17 6 3.3505 -5.3501 0.7718
18 6 3.5106 -5.1938 2.2854
19 6 1.8717 -5.5484 0.4331
20 6 1.7864 -2.5893 -0.0007
21 1 -0.3633 -1.0277 0.0005
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 4.2231 -0.9187 0.6555
25 1 4.0358 -1.6518 -0.9970
26 1 3.1485 -2.8428 1.7289
27 1 6.3426 -6.6265 -1.2088
28 1 3.9200 -6.2158 0.4337
29 1 3.1401 -6.0894 2.7843
30 1 2.9411 -4.3281 2.6236
31 1 4.5641 -5.0526 2.5266
32 1 1.7449 -5.5576 -0.6494
33 1 1.5281 -6.4962 0.8473
34 1 1.2886 -4.7325 0.8602
35 1 1.6742 -3.0140 -0.9983
36 1 0.9443 -2.8117 0.6548
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260634579.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:50:19
Heat of formation + Delta-G solvation = -37.816669 kcal
Electronic energy + Delta-G solvation = -16245.535607 eV
Core-core repulsion = 13729.638025 eV
Total energy + Delta-G solvation = -2515.897582 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.30457 -39.19255 -36.80289 -33.98317 -32.02947 -30.00838 -28.46093 -27.51574
-26.64193 -24.95445 -22.23446 -19.90539 -19.74185 -18.20691 -17.89652 -16.82149
-16.60340 -16.23470 -15.69638 -15.14610 -14.55494 -14.29045 -13.84677 -13.63642
-13.53314 -13.33205 -13.10174 -12.89952 -12.85113 -12.79950 -12.43541 -12.27027
-11.89539 -11.72011 -11.48849 -11.20677 -11.05847 -10.55443 -10.38504 -10.25079
-9.63103 -8.00992 -6.08891 1.40084 1.45688 1.53345 1.63146 2.00546
2.48101 3.28357 3.63512 3.81980 4.20013 4.30456 4.43878 4.59226
4.64133 4.64804 4.67173 4.73293 4.77102 4.80751 4.89616 5.01634
5.08061 5.11889 5.24876 5.28252 5.44279 5.49723 5.72292 5.82335
5.89111 6.10950 6.31370 6.52327 6.85364 7.02866 7.15425 7.57080
9.03248
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.028847 B = 0.008457 C = 0.007059
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 970.396688 B = 3309.977764 C = 3965.404643
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.514 3.486
3 O -0.616 6.616
4 N -0.644 5.644
5 C 0.109 3.891
6 C -0.100 4.100
7 C 0.069 3.931
8 H 0.005 0.995
9 C -0.510 4.510
10 H 0.047 0.953
11 C 0.020 3.980
12 N -0.912 5.912
13 Si 0.932 3.068
14 H -0.272 1.272
15 H -0.285 1.285
16 H -0.287 1.287
17 C -0.093 4.093
18 C -0.124 4.124
19 C -0.137 4.137
20 C 0.114 3.886
21 H 0.098 0.902
22 H 0.105 0.895
23 H 0.104 0.896
24 H 0.057 0.943
25 H 0.072 0.928
26 H 0.096 0.904
27 H 0.256 0.744
28 H 0.056 0.944
29 H 0.040 0.960
30 H 0.057 0.943
31 H 0.031 0.969
32 H 0.040 0.960
33 H 0.044 0.956
34 H 0.068 0.932
35 H 0.090 0.910
36 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.380 2.597 2.848 12.015
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.307 3.693
3 O -0.499 6.499
4 N -0.378 5.378
5 C -0.013 4.013
6 C -0.118 4.118
7 C 0.050 3.950
8 H 0.023 0.977
9 C -0.548 4.548
10 H 0.066 0.934
11 C -0.179 4.179
12 N -0.552 5.552
13 Si 0.759 3.241
14 H -0.197 1.197
15 H -0.212 1.212
16 H -0.214 1.214
17 C -0.113 4.113
18 C -0.181 4.181
19 C -0.194 4.194
20 C -0.007 4.007
21 H 0.117 0.883
22 H 0.124 0.876
23 H 0.123 0.877
24 H 0.076 0.924
25 H 0.090 0.910
26 H 0.114 0.886
27 H 0.066 0.934
28 H 0.074 0.926
29 H 0.059 0.941
30 H 0.075 0.925
31 H 0.050 0.950
32 H 0.059 0.941
33 H 0.063 0.937
34 H 0.086 0.914
35 H 0.108 0.892
36 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -11.134 3.170 2.759 11.900
hybrid contribution 1.728 -0.078 -0.255 1.748
sum -9.406 3.092 2.504 10.213
Atomic orbital electron populations
1.21812 0.87421 1.06054 1.06053 1.21531 0.92245 0.81212 0.74353
1.90656 1.72435 1.32597 1.54254 1.50542 1.09438 1.06536 1.71323
1.23105 0.83011 0.94747 1.00455 1.23150 0.94366 0.94132 1.00198
1.18584 0.92615 0.89918 0.93865 0.97689 1.21432 0.92992 1.08250
1.32122 0.93422 1.25483 1.01336 0.95328 0.95720 1.70004 1.35022
1.11097 1.39111 0.85909 0.82916 0.77841 0.77384 1.19671 1.21157
1.21360 1.21037 0.94925 1.00433 0.94863 1.21674 1.00293 0.99899
0.96257 1.21891 0.96290 1.00966 1.00301 1.23619 0.98845 0.76482
1.01736 0.88304 0.87606 0.87702 0.92421 0.91015 0.88618 0.93437
0.92562 0.94055 0.92451 0.94950 0.94086 0.93683 0.91363 0.89241
0.87140
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.97 10.34 71.24 0.74 -2.23 16
2 C 0.51 16.56 8.17 87.66 0.72 17.27 16
3 O -0.62 -25.90 17.83 -3.05 -0.05 -25.95 16
4 N -0.64 -20.77 3.61 -836.56 -3.02 -23.79 16
5 C 0.11 4.10 7.79 86.48 0.67 4.78 16
6 C -0.10 -3.47 2.71 -10.15 -0.03 -3.50 16
7 C 0.07 2.97 1.36 -11.54 -0.02 2.95 16
8 H 0.00 0.24 7.94 -2.38 -0.02 0.22 16
9 C -0.51 -25.53 7.01 25.60 0.18 -25.35 16
10 H 0.05 2.42 7.64 -2.91 -0.02 2.39 16
11 C 0.02 1.04 5.35 84.66 0.45 1.50 16
12 N -0.91 -49.94 11.51 21.45 0.25 -49.69 16
13 Si 0.93 42.67 29.54 68.60 2.03 44.69 16
14 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16
15 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16
16 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16
17 C -0.09 -3.75 2.58 -10.80 -0.03 -3.78 16
18 C -0.12 -4.50 8.59 71.98 0.62 -3.88 16
19 C -0.14 -4.27 8.33 71.98 0.60 -3.67 16
20 C 0.11 3.10 5.75 86.47 0.50 3.59 16
21 H 0.10 1.42 7.21 -2.39 -0.02 1.40 16
22 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16
23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16
24 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16
25 H 0.07 2.87 8.10 -2.38 -0.02 2.85 16
26 H 0.10 3.27 6.00 -2.39 -0.01 3.25 16
27 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16
28 H 0.06 2.76 6.22 -2.39 -0.01 2.74 16
29 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16
30 H 0.06 1.80 6.13 -2.39 -0.01 1.79 16
31 H 0.03 1.32 7.39 -2.39 -0.02 1.30 16
32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
34 H 0.07 1.71 5.67 -2.39 -0.01 1.70 16
35 H 0.09 2.40 7.96 -2.39 -0.02 2.38 16
36 H 0.11 2.22 7.10 -2.38 -0.02 2.20 16
Total: -1.00 -63.37 286.32 4.65 -58.72
By element:
Atomic # 1 Polarization: 7.28 SS G_CDS: 1.05 Total: 8.33 kcal
Atomic # 6 Polarization: -16.71 SS G_CDS: 4.40 Total: -12.31 kcal
Atomic # 7 Polarization: -70.71 SS G_CDS: -2.77 Total: -73.48 kcal
Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.95 kcal
Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal
Total: -63.37 4.65 -58.72 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260634579.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.908 kcal
(2) G-P(sol) polarization free energy of solvation -63.373 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.466 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.724 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.817 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds