Wall clock time and date at job start Mon Mar 30 2020 03:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21288 * 120.00025 * 2 1 4 4 N 1.34771 * 120.00208 * 180.02562 * 2 1 3 5 5 C 1.47585 * 134.49611 * 180.02562 * 4 2 1 6 6 C 1.53950 * 86.11770 * 155.35740 * 5 4 2 7 7 C 1.53004 * 113.73994 * 137.95380 * 6 5 4 8 8 H 1.09005 * 109.47132 * 299.99684 * 7 6 5 9 9 C 1.50699 * 109.47102 * 59.99813 * 7 6 5 10 10 H 1.07996 * 120.00124 * 5.13691 * 9 7 6 11 11 C 1.37882 * 119.99815 * 185.13984 * 9 7 6 12 12 N 1.31513 * 119.99661 * 355.57212 * 11 9 7 13 13 Si 1.86802 * 119.99992 * 175.57229 * 11 9 7 14 14 H 1.48497 * 109.46950 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.46779 * 119.99692 * 13 11 9 16 16 H 1.48493 * 109.47192 * 239.99930 * 13 11 9 17 17 C 1.53001 * 109.46941 * 180.02562 * 7 6 5 18 18 C 1.53002 * 109.46508 * 305.12867 * 17 7 6 19 19 C 1.52991 * 109.47248 * 65.13281 * 17 7 6 20 20 C 1.47585 * 134.49417 * 359.97438 * 4 2 1 21 21 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47104 * 299.99789 * 1 2 3 23 23 H 1.09000 * 109.47003 * 59.99728 * 1 2 3 24 24 H 1.08990 * 113.76985 * 41.05506 * 5 4 2 25 25 H 1.09008 * 113.87041 * 269.67111 * 5 4 2 26 26 H 1.08994 * 113.73834 * 269.15328 * 6 5 4 27 27 H 0.97003 * 119.99275 * 180.02562 * 12 11 9 28 28 H 1.08997 * 109.46891 * 185.13789 * 17 7 6 29 29 H 1.09007 * 109.46615 * 179.97438 * 18 17 7 30 30 H 1.09002 * 109.47216 * 60.00735 * 18 17 7 31 31 H 1.08998 * 109.47416 * 300.00176 * 18 17 7 32 32 H 1.08997 * 109.47656 * 54.25792 * 19 17 7 33 33 H 1.08998 * 109.46938 * 174.26050 * 19 17 7 34 34 H 1.09001 * 109.47202 * 294.25926 * 19 17 7 35 35 H 1.09003 * 113.77271 * 90.33554 * 20 4 2 36 36 H 1.09006 * 113.76635 * 318.94270 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6098 -1.5365 -0.0002 6 6 3.1592 -2.8625 0.6392 7 6 3.8700 -4.0928 0.0716 8 1 3.6727 -4.1653 -0.9980 9 6 5.3540 -3.9661 0.3013 10 1 5.7429 -3.1373 0.8740 11 6 6.2151 -4.9084 -0.2199 12 7 5.7367 -5.9634 -0.8424 13 14 8.0613 -4.6863 -0.0418 14 1 8.3397 -3.4263 0.6930 15 1 8.6276 -5.8344 0.7109 16 1 8.6843 -4.6215 -1.3882 17 6 3.3505 -5.3501 0.7718 18 6 3.5106 -5.1938 2.2854 19 6 1.8717 -5.5484 0.4331 20 6 1.7864 -2.5893 -0.0007 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 4.2231 -0.9187 0.6555 25 1 4.0358 -1.6518 -0.9970 26 1 3.1485 -2.8428 1.7289 27 1 6.3426 -6.6265 -1.2088 28 1 3.9200 -6.2158 0.4337 29 1 3.1401 -6.0894 2.7843 30 1 2.9411 -4.3281 2.6236 31 1 4.5641 -5.0526 2.5266 32 1 1.7449 -5.5576 -0.6494 33 1 1.5281 -6.4962 0.8473 34 1 1.2886 -4.7325 0.8602 35 1 1.6742 -3.0140 -0.9983 36 1 0.9443 -2.8117 0.6548 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260634579.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:19 Heat of formation + Delta-G solvation = -37.816669 kcal Electronic energy + Delta-G solvation = -16245.535607 eV Core-core repulsion = 13729.638025 eV Total energy + Delta-G solvation = -2515.897582 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.30457 -39.19255 -36.80289 -33.98317 -32.02947 -30.00838 -28.46093 -27.51574 -26.64193 -24.95445 -22.23446 -19.90539 -19.74185 -18.20691 -17.89652 -16.82149 -16.60340 -16.23470 -15.69638 -15.14610 -14.55494 -14.29045 -13.84677 -13.63642 -13.53314 -13.33205 -13.10174 -12.89952 -12.85113 -12.79950 -12.43541 -12.27027 -11.89539 -11.72011 -11.48849 -11.20677 -11.05847 -10.55443 -10.38504 -10.25079 -9.63103 -8.00992 -6.08891 1.40084 1.45688 1.53345 1.63146 2.00546 2.48101 3.28357 3.63512 3.81980 4.20013 4.30456 4.43878 4.59226 4.64133 4.64804 4.67173 4.73293 4.77102 4.80751 4.89616 5.01634 5.08061 5.11889 5.24876 5.28252 5.44279 5.49723 5.72292 5.82335 5.89111 6.10950 6.31370 6.52327 6.85364 7.02866 7.15425 7.57080 9.03248 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028847 B = 0.008457 C = 0.007059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.396688 B = 3309.977764 C = 3965.404643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.514 3.486 3 O -0.616 6.616 4 N -0.644 5.644 5 C 0.109 3.891 6 C -0.100 4.100 7 C 0.069 3.931 8 H 0.005 0.995 9 C -0.510 4.510 10 H 0.047 0.953 11 C 0.020 3.980 12 N -0.912 5.912 13 Si 0.932 3.068 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.287 1.287 17 C -0.093 4.093 18 C -0.124 4.124 19 C -0.137 4.137 20 C 0.114 3.886 21 H 0.098 0.902 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.256 0.744 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.380 2.597 2.848 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.307 3.693 3 O -0.499 6.499 4 N -0.378 5.378 5 C -0.013 4.013 6 C -0.118 4.118 7 C 0.050 3.950 8 H 0.023 0.977 9 C -0.548 4.548 10 H 0.066 0.934 11 C -0.179 4.179 12 N -0.552 5.552 13 Si 0.759 3.241 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.214 1.214 17 C -0.113 4.113 18 C -0.181 4.181 19 C -0.194 4.194 20 C -0.007 4.007 21 H 0.117 0.883 22 H 0.124 0.876 23 H 0.123 0.877 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.134 3.170 2.759 11.900 hybrid contribution 1.728 -0.078 -0.255 1.748 sum -9.406 3.092 2.504 10.213 Atomic orbital electron populations 1.21812 0.87421 1.06054 1.06053 1.21531 0.92245 0.81212 0.74353 1.90656 1.72435 1.32597 1.54254 1.50542 1.09438 1.06536 1.71323 1.23105 0.83011 0.94747 1.00455 1.23150 0.94366 0.94132 1.00198 1.18584 0.92615 0.89918 0.93865 0.97689 1.21432 0.92992 1.08250 1.32122 0.93422 1.25483 1.01336 0.95328 0.95720 1.70004 1.35022 1.11097 1.39111 0.85909 0.82916 0.77841 0.77384 1.19671 1.21157 1.21360 1.21037 0.94925 1.00433 0.94863 1.21674 1.00293 0.99899 0.96257 1.21891 0.96290 1.00966 1.00301 1.23619 0.98845 0.76482 1.01736 0.88304 0.87606 0.87702 0.92421 0.91015 0.88618 0.93437 0.92562 0.94055 0.92451 0.94950 0.94086 0.93683 0.91363 0.89241 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 10.34 71.24 0.74 -2.23 16 2 C 0.51 16.56 8.17 87.66 0.72 17.27 16 3 O -0.62 -25.90 17.83 -3.05 -0.05 -25.95 16 4 N -0.64 -20.77 3.61 -836.56 -3.02 -23.79 16 5 C 0.11 4.10 7.79 86.48 0.67 4.78 16 6 C -0.10 -3.47 2.71 -10.15 -0.03 -3.50 16 7 C 0.07 2.97 1.36 -11.54 -0.02 2.95 16 8 H 0.00 0.24 7.94 -2.38 -0.02 0.22 16 9 C -0.51 -25.53 7.01 25.60 0.18 -25.35 16 10 H 0.05 2.42 7.64 -2.91 -0.02 2.39 16 11 C 0.02 1.04 5.35 84.66 0.45 1.50 16 12 N -0.91 -49.94 11.51 21.45 0.25 -49.69 16 13 Si 0.93 42.67 29.54 68.60 2.03 44.69 16 14 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 15 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 17 C -0.09 -3.75 2.58 -10.80 -0.03 -3.78 16 18 C -0.12 -4.50 8.59 71.98 0.62 -3.88 16 19 C -0.14 -4.27 8.33 71.98 0.60 -3.67 16 20 C 0.11 3.10 5.75 86.47 0.50 3.59 16 21 H 0.10 1.42 7.21 -2.39 -0.02 1.40 16 22 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.07 2.87 8.10 -2.38 -0.02 2.85 16 26 H 0.10 3.27 6.00 -2.39 -0.01 3.25 16 27 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 28 H 0.06 2.76 6.22 -2.39 -0.01 2.74 16 29 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.06 1.80 6.13 -2.39 -0.01 1.79 16 31 H 0.03 1.32 7.39 -2.39 -0.02 1.30 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.71 5.67 -2.39 -0.01 1.70 16 35 H 0.09 2.40 7.96 -2.39 -0.02 2.38 16 36 H 0.11 2.22 7.10 -2.38 -0.02 2.20 16 Total: -1.00 -63.37 286.32 4.65 -58.72 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.05 Total: 8.33 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 4.40 Total: -12.31 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -2.77 Total: -73.48 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.95 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -63.37 4.65 -58.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260634579.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.908 kcal (2) G-P(sol) polarization free energy of solvation -63.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds