Wall clock time and date at job start Mon Mar 30 2020 03:00:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52997 * 109.46772 * 2 1
4 4 C 1.52997 * 109.47255 * 240.00352 * 2 1 3
5 5 C 1.52999 * 109.47162 * 120.00134 * 2 1 3
6 6 C 1.50694 * 109.47106 * 60.00265 * 5 2 1
7 7 N 1.28632 * 122.94267 * 359.97438 * 6 5 2
8 8 C 1.47605 * 108.55312 * 179.59340 * 7 6 5
9 9 C 1.54852 * 101.89037 * 345.05003 * 8 7 6
10 10 H 1.09001 * 111.07759 * 265.26085 * 9 8 7
11 11 C 1.53000 * 111.07586 * 141.22245 * 9 8 7
12 12 C 1.50702 * 109.46988 * 181.73700 * 11 9 8
13 13 H 1.07994 * 120.00030 * 359.97438 * 12 11 9
14 14 C 1.37879 * 119.99523 * 179.97438 * 12 11 9
15 15 N 1.31516 * 119.99521 * 179.97438 * 14 12 11
16 16 Si 1.86797 * 120.00275 * 0.02562 * 14 12 11
17 17 H 1.48496 * 109.47397 * 89.99698 * 16 14 12
18 18 H 1.48505 * 109.46881 * 210.00100 * 16 14 12
19 19 H 1.48505 * 109.47064 * 329.99271 * 16 14 12
20 20 O 1.34604 * 122.93507 * 180.02562 * 6 5 2
21 21 H 1.09003 * 109.47109 * 299.99489 * 1 2 3
22 22 H 1.08999 * 109.47260 * 60.00199 * 1 2 3
23 23 H 1.09000 * 109.46803 * 180.02562 * 1 2 3
24 24 H 1.09000 * 109.47109 * 180.02562 * 3 2 1
25 25 H 1.08997 * 109.47553 * 300.00080 * 3 2 1
26 26 H 1.09001 * 109.47232 * 59.99969 * 3 2 1
27 27 H 1.09008 * 109.47049 * 299.99658 * 4 2 1
28 28 H 1.08999 * 109.47436 * 59.99557 * 4 2 1
29 29 H 1.08997 * 109.47677 * 179.97438 * 4 2 1
30 30 H 1.09001 * 109.46912 * 300.00074 * 5 2 1
31 31 H 1.09000 * 109.46873 * 180.02562 * 5 2 1
32 32 H 1.08990 * 110.94360 * 103.20003 * 8 7 6
33 33 H 1.08994 * 110.94344 * 226.86686 * 8 7 6
34 34 H 1.09005 * 109.46790 * 301.73634 * 11 9 8
35 35 H 1.09001 * 109.46997 * 61.72977 * 11 9 8
36 36 H 0.97007 * 119.99512 * 179.97438 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0401 -0.7212 -1.2492
5 6 2.0401 -0.7213 1.2492
6 6 1.5378 -2.1420 1.2491
7 7 0.7954 -2.6215 0.3145
8 6 0.5000 -4.0335 0.6270
9 6 1.5483 -4.3435 1.7238
10 1 2.4424 -4.7959 1.2948
11 6 0.9541 -5.2343 2.8167
12 6 1.9895 -5.4778 3.8843
13 1 2.9730 -5.0413 3.7923
14 6 1.6810 -6.2580 4.9785
15 7 2.5847 -6.4709 5.9100
16 14 -0.0199 -7.0136 5.1372
17 1 -0.0295 -8.3513 4.4926
18 1 -0.3670 -7.1540 6.5743
19 1 -1.0156 -6.1360 4.4711
20 8 1.8260 -3.0202 2.2277
21 1 -0.3633 0.5138 0.8900
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 3.1299 1.4426 -0.0005
25 1 1.6766 1.9564 -0.8899
26 1 1.6766 1.9563 0.8900
27 1 1.6768 -1.7489 -1.2493
28 1 1.6767 -0.2074 -2.1392
29 1 3.1300 -0.7208 -1.2495
30 1 1.6767 -0.2074 2.1392
31 1 3.1300 -0.7208 1.2494
32 1 -0.5129 -4.1432 1.0140
33 1 0.6516 -4.6661 -0.2475
34 1 0.0876 -4.7406 3.2567
35 1 0.6484 -6.1865 2.3830
36 1 2.3676 -7.0195 6.6800
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260642263.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:52
Heat of formation + Delta-G solvation = -45.499844 kcal
Electronic energy + Delta-G solvation = -15927.428216 eV
Core-core repulsion = 13411.197466 eV
Total energy + Delta-G solvation = -2516.230749 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-42.20015 -38.54010 -35.44369 -34.34424 -33.23204 -30.21123 -28.13713 -27.96902
-27.44890 -24.64301 -22.68528 -21.34946 -19.54745 -18.96229 -17.61741 -17.39459
-16.46747 -15.94593 -15.43490 -15.27116 -14.70586 -14.53398 -14.15532 -13.95884
-13.77582 -13.52549 -13.42466 -12.78733 -12.73467 -12.53411 -12.46223 -12.31729
-12.15773 -11.80298 -11.62549 -11.54582 -11.48675 -11.41841 -10.81803 -10.56647
-9.86744 -8.32476 -6.37897 1.17943 1.33634 1.36392 1.47330 2.32697
2.39298 3.02660 3.19878 3.69583 3.90305 3.95558 4.03596 4.18895
4.34710 4.54923 4.61067 4.66254 4.68434 4.74421 4.90948 4.93180
4.97277 5.01871 5.08622 5.17894 5.24543 5.29007 5.33944 5.44669
5.50715 5.57693 5.68087 5.92661 6.20403 6.66907 6.81455 7.25096
8.84639
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.050072 B = 0.006073 C = 0.005846
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 559.064729 B = 4609.282059 C = 4788.434730
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.049 4.049
3 C -0.137 4.137
4 C -0.151 4.151
5 C -0.044 4.044
6 C 0.290 3.710
7 N -0.538 5.538
8 C -0.006 4.006
9 C 0.066 3.934
10 H 0.078 0.922
11 C -0.004 4.004
12 C -0.529 4.529
13 H 0.028 0.972
14 C 0.005 3.995
15 N -0.949 5.949
16 Si 0.953 3.047
17 H -0.259 1.259
18 H -0.283 1.283
19 H -0.249 1.249
20 O -0.357 6.357
21 H 0.046 0.954
22 H 0.058 0.942
23 H 0.069 0.931
24 H 0.061 0.939
25 H 0.066 0.934
26 H 0.061 0.939
27 H 0.069 0.931
28 H 0.058 0.942
29 H 0.047 0.953
30 H 0.101 0.899
31 H 0.103 0.897
32 H 0.089 0.911
33 H 0.114 0.886
34 H 0.024 0.976
35 H 0.053 0.947
36 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.748 12.285 -13.380 18.774
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.049 4.049
3 C -0.195 4.195
4 C -0.209 4.209
5 C -0.082 4.082
6 C 0.066 3.934
7 N -0.275 5.275
8 C -0.135 4.135
9 C 0.010 3.990
10 H 0.095 0.905
11 C -0.041 4.041
12 C -0.567 4.567
13 H 0.046 0.954
14 C -0.192 4.192
15 N -0.590 5.590
16 Si 0.775 3.225
17 H -0.183 1.183
18 H -0.209 1.209
19 H -0.172 1.172
20 O -0.260 6.260
21 H 0.065 0.935
22 H 0.077 0.923
23 H 0.088 0.912
24 H 0.080 0.920
25 H 0.085 0.915
26 H 0.080 0.920
27 H 0.088 0.912
28 H 0.077 0.923
29 H 0.066 0.934
30 H 0.119 0.881
31 H 0.121 0.879
32 H 0.107 0.893
33 H 0.132 0.868
34 H 0.042 0.958
35 H 0.071 0.929
36 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -5.060 12.372 -13.774 19.193
hybrid contribution 0.037 -1.181 1.261 1.728
sum -5.023 11.191 -12.512 17.522
Atomic orbital electron populations
1.22093 0.94449 1.03298 1.01036 1.20310 0.96185 0.95391 0.92985
1.21849 1.01350 0.93666 1.02591 1.22093 1.00038 1.02180 0.96552
1.20709 1.02041 0.84102 1.01355 1.26267 0.89518 0.95011 0.82614
1.74602 1.18629 1.08623 1.25695 1.24180 0.99468 0.91897 0.97953
1.24088 0.98344 0.81629 0.94983 0.90458 1.19628 0.95844 0.95256
0.93364 1.21244 0.98931 1.30681 1.05880 0.95376 1.26027 1.01814
0.96447 0.94877 1.70072 1.36806 1.40459 1.11640 0.85626 0.79377
0.79675 0.77777 1.18325 1.20916 1.17237 1.87116 1.81982 1.17363
1.39565 0.93480 0.92315 0.91243 0.91965 0.91508 0.92022 0.91248
0.92294 0.93371 0.88054 0.87897 0.89261 0.86772 0.95801 0.92877
0.92354
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.39 8.18 71.98 0.59 -2.80 16
2 C -0.05 -1.02 0.77 -52.18 -0.04 -1.06 16
3 C -0.14 -2.19 8.47 71.98 0.61 -1.58 16
4 C -0.15 -3.33 8.18 71.98 0.59 -2.74 16
5 C -0.04 -1.11 4.91 29.85 0.15 -0.96 16
6 C 0.29 9.79 7.04 88.58 0.62 10.41 16
7 N -0.54 -17.30 6.04 -449.43 -2.72 -20.02 16
8 C -0.01 -0.20 7.70 86.80 0.67 0.47 16
9 C 0.07 2.73 3.70 31.23 0.12 2.85 16
10 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16
11 C 0.00 -0.17 3.77 29.85 0.11 -0.05 16
12 C -0.53 -31.16 9.52 25.60 0.24 -30.92 16
13 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16
14 C 0.01 0.31 5.47 84.65 0.46 0.77 16
15 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16
16 Si 0.95 43.93 27.47 68.60 1.88 45.82 16
17 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16
18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
19 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16
20 O -0.36 -15.35 10.74 -78.70 -0.85 -16.19 16
21 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
23 H 0.07 1.89 5.40 -2.39 -0.01 1.88 16
24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
27 H 0.07 1.85 5.40 -2.38 -0.01 1.83 16
28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
29 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16
30 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16
31 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16
32 H 0.09 2.87 7.91 -2.39 -0.02 2.85 16
33 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16
34 H 0.02 1.13 7.20 -2.38 -0.02 1.12 16
35 H 0.05 2.29 7.57 -2.39 -0.02 2.27 16
36 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16
Total: -1.00 -67.61 286.00 3.72 -63.89
By element:
Atomic # 1 Polarization: 11.03 SS G_CDS: 0.98 Total: 12.01 kcal
Atomic # 6 Polarization: -29.74 SS G_CDS: 4.12 Total: -25.62 kcal
Atomic # 7 Polarization: -77.49 SS G_CDS: -2.42 Total: -79.91 kcal
Atomic # 8 Polarization: -15.35 SS G_CDS: -0.85 Total: -16.19 kcal
Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal
Total: -67.61 3.72 -63.89 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260642263.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.395 kcal
(2) G-P(sol) polarization free energy of solvation -67.614 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.219 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.895 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds