Wall clock time and date at job start Mon Mar 30 2020 03:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46772 * 2 1 4 4 C 1.52997 * 109.47255 * 240.00352 * 2 1 3 5 5 C 1.52999 * 109.47162 * 120.00134 * 2 1 3 6 6 C 1.50694 * 109.47106 * 60.00265 * 5 2 1 7 7 N 1.28632 * 122.94267 * 359.97438 * 6 5 2 8 8 C 1.47605 * 108.55312 * 179.59340 * 7 6 5 9 9 C 1.54852 * 101.89037 * 345.05003 * 8 7 6 10 10 H 1.09001 * 111.07759 * 265.26085 * 9 8 7 11 11 C 1.53000 * 111.07586 * 141.22245 * 9 8 7 12 12 C 1.50702 * 109.46988 * 181.73700 * 11 9 8 13 13 H 1.07994 * 120.00030 * 359.97438 * 12 11 9 14 14 C 1.37879 * 119.99523 * 179.97438 * 12 11 9 15 15 N 1.31516 * 119.99521 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00275 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47397 * 89.99698 * 16 14 12 18 18 H 1.48505 * 109.46881 * 210.00100 * 16 14 12 19 19 H 1.48505 * 109.47064 * 329.99271 * 16 14 12 20 20 O 1.34604 * 122.93507 * 180.02562 * 6 5 2 21 21 H 1.09003 * 109.47109 * 299.99489 * 1 2 3 22 22 H 1.08999 * 109.47260 * 60.00199 * 1 2 3 23 23 H 1.09000 * 109.46803 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47109 * 180.02562 * 3 2 1 25 25 H 1.08997 * 109.47553 * 300.00080 * 3 2 1 26 26 H 1.09001 * 109.47232 * 59.99969 * 3 2 1 27 27 H 1.09008 * 109.47049 * 299.99658 * 4 2 1 28 28 H 1.08999 * 109.47436 * 59.99557 * 4 2 1 29 29 H 1.08997 * 109.47677 * 179.97438 * 4 2 1 30 30 H 1.09001 * 109.46912 * 300.00074 * 5 2 1 31 31 H 1.09000 * 109.46873 * 180.02562 * 5 2 1 32 32 H 1.08990 * 110.94360 * 103.20003 * 8 7 6 33 33 H 1.08994 * 110.94344 * 226.86686 * 8 7 6 34 34 H 1.09005 * 109.46790 * 301.73634 * 11 9 8 35 35 H 1.09001 * 109.46997 * 61.72977 * 11 9 8 36 36 H 0.97007 * 119.99512 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2492 6 6 1.5378 -2.1420 1.2491 7 7 0.7954 -2.6215 0.3145 8 6 0.5000 -4.0335 0.6270 9 6 1.5483 -4.3435 1.7238 10 1 2.4424 -4.7959 1.2948 11 6 0.9541 -5.2343 2.8167 12 6 1.9895 -5.4778 3.8843 13 1 2.9730 -5.0413 3.7923 14 6 1.6810 -6.2580 4.9785 15 7 2.5847 -6.4709 5.9100 16 14 -0.0199 -7.0136 5.1372 17 1 -0.0295 -8.3513 4.4926 18 1 -0.3670 -7.1540 6.5743 19 1 -1.0156 -6.1360 4.4711 20 8 1.8260 -3.0202 2.2277 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6768 -1.7489 -1.2493 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7208 -1.2495 30 1 1.6767 -0.2074 2.1392 31 1 3.1300 -0.7208 1.2494 32 1 -0.5129 -4.1432 1.0140 33 1 0.6516 -4.6661 -0.2475 34 1 0.0876 -4.7406 3.2567 35 1 0.6484 -6.1865 2.3830 36 1 2.3676 -7.0195 6.6800 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260642263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:52 Heat of formation + Delta-G solvation = -45.499844 kcal Electronic energy + Delta-G solvation = -15927.428216 eV Core-core repulsion = 13411.197466 eV Total energy + Delta-G solvation = -2516.230749 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.20015 -38.54010 -35.44369 -34.34424 -33.23204 -30.21123 -28.13713 -27.96902 -27.44890 -24.64301 -22.68528 -21.34946 -19.54745 -18.96229 -17.61741 -17.39459 -16.46747 -15.94593 -15.43490 -15.27116 -14.70586 -14.53398 -14.15532 -13.95884 -13.77582 -13.52549 -13.42466 -12.78733 -12.73467 -12.53411 -12.46223 -12.31729 -12.15773 -11.80298 -11.62549 -11.54582 -11.48675 -11.41841 -10.81803 -10.56647 -9.86744 -8.32476 -6.37897 1.17943 1.33634 1.36392 1.47330 2.32697 2.39298 3.02660 3.19878 3.69583 3.90305 3.95558 4.03596 4.18895 4.34710 4.54923 4.61067 4.66254 4.68434 4.74421 4.90948 4.93180 4.97277 5.01871 5.08622 5.17894 5.24543 5.29007 5.33944 5.44669 5.50715 5.57693 5.68087 5.92661 6.20403 6.66907 6.81455 7.25096 8.84639 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.050072 B = 0.006073 C = 0.005846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.064729 B = 4609.282059 C = 4788.434730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.049 4.049 3 C -0.137 4.137 4 C -0.151 4.151 5 C -0.044 4.044 6 C 0.290 3.710 7 N -0.538 5.538 8 C -0.006 4.006 9 C 0.066 3.934 10 H 0.078 0.922 11 C -0.004 4.004 12 C -0.529 4.529 13 H 0.028 0.972 14 C 0.005 3.995 15 N -0.949 5.949 16 Si 0.953 3.047 17 H -0.259 1.259 18 H -0.283 1.283 19 H -0.249 1.249 20 O -0.357 6.357 21 H 0.046 0.954 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.024 0.976 35 H 0.053 0.947 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.748 12.285 -13.380 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.049 4.049 3 C -0.195 4.195 4 C -0.209 4.209 5 C -0.082 4.082 6 C 0.066 3.934 7 N -0.275 5.275 8 C -0.135 4.135 9 C 0.010 3.990 10 H 0.095 0.905 11 C -0.041 4.041 12 C -0.567 4.567 13 H 0.046 0.954 14 C -0.192 4.192 15 N -0.590 5.590 16 Si 0.775 3.225 17 H -0.183 1.183 18 H -0.209 1.209 19 H -0.172 1.172 20 O -0.260 6.260 21 H 0.065 0.935 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.107 0.893 33 H 0.132 0.868 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.060 12.372 -13.774 19.193 hybrid contribution 0.037 -1.181 1.261 1.728 sum -5.023 11.191 -12.512 17.522 Atomic orbital electron populations 1.22093 0.94449 1.03298 1.01036 1.20310 0.96185 0.95391 0.92985 1.21849 1.01350 0.93666 1.02591 1.22093 1.00038 1.02180 0.96552 1.20709 1.02041 0.84102 1.01355 1.26267 0.89518 0.95011 0.82614 1.74602 1.18629 1.08623 1.25695 1.24180 0.99468 0.91897 0.97953 1.24088 0.98344 0.81629 0.94983 0.90458 1.19628 0.95844 0.95256 0.93364 1.21244 0.98931 1.30681 1.05880 0.95376 1.26027 1.01814 0.96447 0.94877 1.70072 1.36806 1.40459 1.11640 0.85626 0.79377 0.79675 0.77777 1.18325 1.20916 1.17237 1.87116 1.81982 1.17363 1.39565 0.93480 0.92315 0.91243 0.91965 0.91508 0.92022 0.91248 0.92294 0.93371 0.88054 0.87897 0.89261 0.86772 0.95801 0.92877 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.18 71.98 0.59 -2.80 16 2 C -0.05 -1.02 0.77 -52.18 -0.04 -1.06 16 3 C -0.14 -2.19 8.47 71.98 0.61 -1.58 16 4 C -0.15 -3.33 8.18 71.98 0.59 -2.74 16 5 C -0.04 -1.11 4.91 29.85 0.15 -0.96 16 6 C 0.29 9.79 7.04 88.58 0.62 10.41 16 7 N -0.54 -17.30 6.04 -449.43 -2.72 -20.02 16 8 C -0.01 -0.20 7.70 86.80 0.67 0.47 16 9 C 0.07 2.73 3.70 31.23 0.12 2.85 16 10 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 11 C 0.00 -0.17 3.77 29.85 0.11 -0.05 16 12 C -0.53 -31.16 9.52 25.60 0.24 -30.92 16 13 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 14 C 0.01 0.31 5.47 84.65 0.46 0.77 16 15 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 16 Si 0.95 43.93 27.47 68.60 1.88 45.82 16 17 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 20 O -0.36 -15.35 10.74 -78.70 -0.85 -16.19 16 21 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.07 1.89 5.40 -2.39 -0.01 1.88 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 1.85 5.40 -2.38 -0.01 1.83 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.09 2.87 7.91 -2.39 -0.02 2.85 16 33 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.02 1.13 7.20 -2.38 -0.02 1.12 16 35 H 0.05 2.29 7.57 -2.39 -0.02 2.27 16 36 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 Total: -1.00 -67.61 286.00 3.72 -63.89 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.98 Total: 12.01 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 4.12 Total: -25.62 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.42 Total: -79.91 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.85 Total: -16.19 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.82 kcal Total: -67.61 3.72 -63.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260642263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.395 kcal (2) G-P(sol) polarization free energy of solvation -67.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds