Wall clock time and date at job start Mon Mar 30 2020 03:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 C 1.53003 * 109.46948 * 119.99646 * 2 1 3 5 5 H 1.08996 * 109.47051 * 186.45196 * 4 2 1 6 6 C 1.52995 * 109.47431 * 306.45426 * 4 2 1 7 7 C 1.50692 * 109.47227 * 291.33345 * 6 4 2 8 8 H 1.08007 * 120.00321 * 1.74360 * 7 6 4 9 9 C 1.37879 * 120.00083 * 181.74723 * 7 6 4 10 10 N 1.31509 * 120.00024 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00008 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46933 * 270.00175 * 11 9 7 13 13 H 1.48502 * 109.47244 * 29.99923 * 11 9 7 14 14 H 1.48501 * 109.47061 * 150.00429 * 11 9 7 15 15 C 1.53006 * 109.46819 * 66.45717 * 4 2 1 16 16 H 1.09000 * 110.43291 * 308.30845 * 15 4 2 17 17 C 1.54625 * 110.48505 * 185.77168 * 15 4 2 18 18 C 1.54485 * 101.76504 * 216.52522 * 17 15 4 19 19 N 1.46761 * 105.47164 * 25.41422 * 18 17 15 20 20 C 1.34421 * 111.30522 * 342.98173 * 19 18 17 21 21 O 1.21284 * 124.94548 * 180.40448 * 20 19 18 22 22 H 1.09001 * 109.47228 * 186.32544 * 1 2 3 23 23 H 1.08994 * 109.47419 * 306.33193 * 1 2 3 24 24 H 1.09004 * 109.47250 * 66.33209 * 1 2 3 25 25 H 1.09001 * 109.47273 * 240.00121 * 2 1 3 26 26 H 1.08997 * 109.47065 * 169.84487 * 3 2 1 27 27 H 1.09006 * 109.47209 * 289.84401 * 3 2 1 28 28 H 1.08998 * 109.47322 * 49.84548 * 3 2 1 29 29 H 1.08993 * 109.47265 * 171.32990 * 6 4 2 30 30 H 1.09001 * 109.46954 * 51.33204 * 6 4 2 31 31 H 0.97002 * 120.00080 * 179.97438 * 10 9 7 32 32 H 1.09000 * 110.96784 * 334.63961 * 17 15 4 33 33 H 1.08997 * 110.97303 * 98.40191 * 17 15 4 34 34 H 1.08990 * 110.24662 * 144.41538 * 18 17 15 35 35 H 1.08996 * 110.24060 * 266.32892 * 18 17 15 36 36 H 0.97001 * 124.34858 * 162.96933 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1238 -0.6223 1.3089 6 6 1.4019 -0.0996 2.4932 7 6 1.9370 1.2955 2.6885 8 1 2.6386 1.7090 1.9790 9 6 1.5311 2.0441 3.7728 10 7 0.6765 1.5408 4.6365 11 14 2.1950 3.7732 4.0152 12 1 3.4341 3.7177 4.8320 13 1 2.5005 4.3761 2.6929 14 1 1.1785 4.6004 4.7135 15 6 1.6666 -2.2029 1.1709 16 1 0.6026 -2.3168 0.9637 17 6 2.0425 -2.9260 2.4850 18 6 2.5060 -4.3047 1.9644 19 7 2.9541 -4.0724 0.5863 20 6 2.4926 -2.9018 0.1135 21 8 2.7073 -2.4688 -0.9989 22 1 -0.3634 -1.0214 0.1132 23 1 -0.3634 0.6088 0.8278 24 1 -0.3634 0.4126 -0.9412 25 1 1.8933 -0.5138 -0.8900 26 1 3.1148 1.4479 0.1812 27 1 1.8322 1.9014 -0.9667 28 1 1.5363 2.0060 0.7854 29 1 1.6418 -0.7063 3.3663 30 1 0.3202 -0.0592 2.3651 31 1 0.3912 2.0673 5.3996 32 1 2.8545 -2.4089 2.9962 33 1 1.1747 -3.0267 3.1368 34 1 3.3304 -4.6791 2.5711 35 1 1.6765 -5.0115 1.9787 36 1 3.5119 -4.6848 0.0816 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260712863.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:53 Heat of formation + Delta-G solvation = -51.413064 kcal Electronic energy + Delta-G solvation = -16523.238195 eV Core-core repulsion = 14006.751029 eV Total energy + Delta-G solvation = -2516.487166 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22830 -36.76290 -35.94362 -32.45709 -31.32078 -28.49342 -27.60629 -26.21650 -24.43814 -22.34067 -20.73352 -19.82988 -18.00913 -17.05956 -16.26105 -16.18595 -14.54705 -14.46197 -14.14924 -13.53932 -13.41315 -13.25125 -12.67539 -12.06010 -12.00780 -11.94688 -11.65232 -11.17119 -10.93010 -10.74740 -10.64969 -10.48227 -10.27121 -10.14671 -9.82957 -9.47935 -9.37555 -8.93667 -8.81193 -8.42113 -8.21798 -5.95758 -3.92234 2.97087 3.33826 3.41080 3.44422 3.60287 4.49557 4.77547 4.88675 5.10892 5.38664 5.40028 5.60471 5.66703 5.95212 5.96501 6.06146 6.20075 6.29787 6.46913 6.54546 6.74083 6.81781 6.87228 6.94207 6.96392 7.08329 7.15036 7.20966 7.33279 7.64393 7.77184 7.89051 8.07093 8.50443 8.58400 9.11275 9.67641 11.15723 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032383 B = 0.008719 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.435420 B = 3210.605244 C = 3655.484644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.058 4.058 5 H 0.056 0.944 6 C 0.024 3.976 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.055 3.945 10 N -0.897 5.897 11 Si 0.882 3.118 12 H -0.283 1.283 13 H -0.273 1.273 14 H -0.288 1.288 15 C -0.120 4.120 16 H 0.104 0.896 17 C -0.125 4.125 18 C 0.100 3.900 19 N -0.741 5.741 20 C 0.522 3.478 21 O -0.532 6.532 22 H 0.040 0.960 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.022 0.978 28 H 0.098 0.902 29 H 0.019 0.981 30 H 0.024 0.976 31 H 0.258 0.742 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -9.860 -4.034 10.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.207 4.207 4 C -0.077 4.077 5 H 0.075 0.925 6 C -0.012 4.012 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.710 3.290 12 H -0.209 1.209 13 H -0.198 1.198 14 H -0.214 1.214 15 C -0.141 4.141 16 H 0.122 0.878 17 C -0.163 4.163 18 C -0.025 4.025 19 N -0.397 5.397 20 C 0.309 3.691 21 O -0.409 6.409 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.117 0.883 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.515 -9.497 -4.394 10.573 hybrid contribution 0.603 0.540 0.146 0.823 sum 2.118 -8.956 -4.247 10.136 Atomic orbital electron populations 1.21892 0.96509 1.00523 1.00968 1.21048 0.95085 0.96526 0.97822 1.22333 1.00657 0.97031 1.00652 1.21166 0.99805 0.88528 0.98159 0.92533 1.19286 0.96325 0.95171 0.90455 1.21683 1.25799 0.99562 1.08397 0.90873 1.24988 0.95436 0.97941 0.96127 1.69959 1.32996 1.37125 1.13600 0.86747 0.78619 0.85270 0.78336 1.20907 1.19794 1.21441 1.22178 1.00510 0.98325 0.93074 0.87816 1.22694 1.03147 0.93187 0.97278 1.22105 0.99454 0.98745 0.82154 1.46304 1.54243 1.22583 1.16565 1.21248 0.79074 0.80818 0.87938 1.90661 1.60357 1.68380 1.21459 0.94144 0.91148 0.94525 0.91255 0.93960 0.95895 0.88327 0.96276 0.95780 0.93269 0.89350 0.89173 0.90823 0.91622 0.76082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.36 37.16 0.31 -2.37 16 2 C -0.09 -1.74 2.62 -90.62 -0.24 -1.98 16 3 C -0.15 -3.11 7.52 37.16 0.28 -2.83 16 4 C -0.06 -1.17 1.25 -90.62 -0.11 -1.28 16 5 H 0.06 1.22 8.04 -51.93 -0.42 0.81 16 6 C 0.02 0.58 4.01 -27.89 -0.11 0.47 16 7 C -0.52 -13.56 6.80 -34.44 -0.23 -13.79 16 8 H 0.07 1.89 4.72 -52.48 -0.25 1.64 16 9 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 11 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 15 C -0.12 -2.02 2.42 -90.63 -0.22 -2.24 16 16 H 0.10 1.72 6.25 -51.93 -0.32 1.39 16 17 C -0.13 -1.77 5.35 -25.10 -0.13 -1.91 16 18 C 0.10 1.09 7.78 -3.12 -0.02 1.06 16 19 N -0.74 -9.58 6.24 -59.20 -0.37 -9.95 16 20 C 0.52 8.90 7.82 -10.86 -0.08 8.81 16 21 O -0.53 -10.86 15.69 5.55 0.09 -10.78 16 22 H 0.04 0.70 6.24 -51.93 -0.32 0.38 16 23 H 0.07 1.46 6.48 -51.93 -0.34 1.13 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.45 5.81 -51.93 -0.30 1.15 16 26 H 0.04 0.88 7.44 -51.93 -0.39 0.49 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.10 2.26 5.28 -51.93 -0.27 1.99 16 29 H 0.02 0.47 6.52 -51.93 -0.34 0.13 16 30 H 0.02 0.60 5.98 -51.93 -0.31 0.29 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.09 1.37 7.48 -51.93 -0.39 0.98 16 33 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.40 4.33 8.96 -40.82 -0.37 3.97 16 LS Contribution 273.68 15.07 4.12 4.12 Total: -1.00 -30.20 273.68 -6.37 -36.57 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.26 Total: 3.53 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -0.67 Total: -14.64 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.37 Total: -34.98 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.20 -6.37 -36.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260712863.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.842 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds