Wall clock time and date at job start Mon Mar 30 2020 02:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47453 * 2 1 4 4 C 1.52990 * 113.00278 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47516 * 48.09831 * 4 3 2 6 6 C 1.47483 * 110.99665 * 79.56078 * 5 4 3 7 7 C 1.53631 * 87.95079 * 138.65462 * 6 5 4 8 8 C 1.47476 * 111.00279 * 175.53234 * 5 4 3 9 9 H 1.08998 * 113.47902 * 336.12639 * 8 5 4 10 10 C 1.50703 * 113.47444 * 106.53377 * 8 5 4 11 11 H 1.08000 * 119.99939 * 358.89576 * 10 8 5 12 12 C 1.37874 * 119.99718 * 178.89968 * 10 8 5 13 13 N 1.31513 * 120.00428 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 119.99702 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46691 * 269.99394 * 14 12 10 16 16 H 1.48506 * 109.46773 * 149.99840 * 14 12 10 17 17 H 1.48494 * 109.47051 * 29.99528 * 14 12 10 18 18 C 1.54041 * 113.92276 * 311.93543 * 3 2 1 19 19 O 1.44178 * 85.51658 * 91.65512 * 18 3 2 20 20 C 1.44177 * 93.33999 * 24.19122 * 19 18 3 21 21 H 1.09005 * 109.47433 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47401 * 299.99569 * 1 2 3 23 23 H 1.09004 * 109.47248 * 60.00038 * 1 2 3 24 24 H 1.09006 * 109.47113 * 240.00080 * 2 1 3 25 25 H 1.08997 * 109.47241 * 120.00320 * 2 1 3 26 26 H 1.09004 * 109.47358 * 288.09908 * 4 3 2 27 27 H 1.08996 * 109.47400 * 168.10522 * 4 3 2 28 28 H 1.08997 * 113.47541 * 253.47597 * 6 5 4 29 29 H 1.09000 * 113.47371 * 23.93947 * 6 5 4 30 30 H 1.08998 * 114.20732 * 220.39138 * 7 6 5 31 31 H 1.09000 * 114.17034 * 87.65225 * 7 6 5 32 32 H 0.97003 * 119.99617 * 0.02562 * 13 12 10 33 33 H 1.09004 * 113.86048 * 205.80361 * 18 3 2 34 34 H 1.08998 * 113.86544 * 337.50924 * 18 3 2 35 35 H 1.09005 * 113.86489 * 221.65481 * 20 19 18 36 36 H 1.09005 * 113.98625 * 89.96721 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5670 1.5366 -0.0006 5 7 4.1124 0.6437 -1.0318 6 6 4.0148 1.2586 -2.3688 7 6 5.4225 0.7169 -2.6601 8 6 5.5766 0.7867 -1.1344 9 1 5.9449 1.7490 -0.7787 10 6 6.3357 -0.3785 -0.5536 11 1 5.8004 -1.2007 -0.1022 12 6 7.7136 -0.3948 -0.5987 13 7 8.3655 0.6062 -1.1489 14 14 8.6545 -1.8395 0.1205 15 1 8.9522 -1.5735 1.5509 16 1 9.9264 -2.0218 -0.6242 17 1 7.8331 -3.0712 0.0065 18 6 1.3611 2.3451 -1.0475 19 8 0.4264 2.6674 0.0019 20 6 1.3613 2.3421 1.0501 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.9498 1.2402 0.9760 27 1 3.8677 2.5626 -0.2124 28 1 3.2401 0.8159 -2.9949 29 1 3.9661 2.3473 -2.3434 30 1 6.0638 1.4092 -3.2056 31 1 5.4364 -0.2953 -3.0642 32 1 7.8769 1.3562 -1.5226 33 1 1.9739 3.1882 -1.3666 34 1 0.9182 1.7984 -1.8800 35 1 0.9186 1.7931 1.8812 36 1 1.9751 3.1830 1.3731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:39 Heat of formation + Delta-G solvation = 13.728877 kcal Electronic energy + Delta-G solvation = -16355.962743 eV Core-core repulsion = 13842.300344 eV Total energy + Delta-G solvation = -2513.662399 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89587 -38.75476 -33.60544 -32.58506 -30.46650 -27.27397 -26.67866 -26.03832 -23.48359 -22.85969 -22.56429 -18.98286 -18.44948 -16.96350 -16.28643 -15.96162 -15.42762 -14.68861 -14.30317 -14.13908 -13.77891 -13.26895 -12.76729 -12.66397 -12.07922 -11.88110 -11.62456 -11.33393 -11.14002 -10.95526 -10.82842 -10.53042 -10.48394 -10.15424 -10.07477 -9.92051 -9.69895 -9.35952 -8.63188 -8.34322 -7.84476 -6.38404 -4.07179 3.42958 3.46580 3.62886 3.83288 4.32944 4.50976 4.80534 5.08176 5.15143 5.29715 5.35273 5.38480 5.52787 5.61949 5.64220 5.69245 5.72656 5.88404 5.96443 6.07883 6.16277 6.20416 6.27820 6.30448 6.35542 6.46938 6.53918 6.61700 6.70238 6.82004 7.15515 7.18016 8.06224 8.16412 8.54703 8.83972 9.63596 11.00672 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040580 B = 0.007071 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.825418 B = 3958.805238 C = 4194.969619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.111 4.111 4 C 0.032 3.968 5 N -0.459 5.459 6 C -0.010 4.010 7 C -0.145 4.145 8 C 0.160 3.840 9 H 0.026 0.974 10 C -0.575 4.575 11 H 0.057 0.943 12 C 0.018 3.982 13 N -0.913 5.913 14 Si 1.073 2.927 15 H -0.289 1.289 16 H -0.285 1.285 17 H -0.288 1.288 18 C 0.042 3.958 19 O -0.381 6.381 20 C 0.039 3.961 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.267 0.733 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.902 2.083 1.197 12.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.111 4.111 4 C -0.098 4.098 5 N -0.181 5.181 6 C -0.139 4.139 7 C -0.184 4.184 8 C 0.052 3.948 9 H 0.044 0.956 10 C -0.614 4.614 11 H 0.076 0.924 12 C -0.186 4.186 13 N -0.549 5.549 14 Si 0.901 3.099 15 H -0.216 1.216 16 H -0.211 1.211 17 H -0.214 1.214 18 C -0.034 4.034 19 O -0.300 6.300 20 C -0.039 4.039 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.968 0.930 1.625 11.126 hybrid contribution -1.020 1.599 -0.310 1.922 sum -11.988 2.529 1.314 12.322 Atomic orbital electron populations 1.21841 0.96193 1.00428 1.02053 1.21087 0.94407 0.93295 1.03679 1.23589 0.95883 0.97016 0.94621 1.22572 0.92792 0.95318 0.99088 1.68979 1.11233 1.38342 0.99540 1.23791 0.99011 0.96752 0.94372 1.23334 0.93958 1.00350 1.00718 1.20938 0.84887 0.97108 0.91850 0.95633 1.21794 0.92954 1.05010 1.41595 0.92442 1.25819 0.95149 1.01933 0.95678 1.70775 1.39253 1.08544 1.36293 0.83487 0.75611 0.74673 0.76131 1.21561 1.21050 1.21367 1.24073 0.90065 0.96741 0.92557 1.89606 1.32950 1.90394 1.17001 1.24044 0.90222 0.96970 0.92619 0.93474 0.92906 0.92806 0.89978 0.91624 0.90611 0.95011 0.91612 0.93364 0.93072 0.90073 0.92224 0.90860 0.89403 0.89337 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.63 37.15 0.32 -1.57 16 2 C -0.09 -1.29 5.34 -26.73 -0.14 -1.43 16 3 C -0.11 -1.64 1.11 -153.43 -0.17 -1.81 16 4 C 0.03 0.57 4.34 -3.83 -0.02 0.55 16 5 N -0.46 -9.49 5.22 -237.73 -1.24 -10.73 16 6 C -0.01 -0.18 6.63 -7.48 -0.05 -0.23 16 7 C -0.14 -3.20 7.82 -26.14 -0.20 -3.41 16 8 C 0.16 3.91 2.26 -72.59 -0.16 3.75 16 9 H 0.03 0.68 7.41 -51.93 -0.38 0.29 16 10 C -0.58 -15.94 9.05 -34.44 -0.31 -16.25 16 11 H 0.06 1.64 7.81 -52.49 -0.41 1.22 16 12 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 13 N -0.91 -27.00 13.65 55.43 0.76 -26.24 16 14 Si 1.07 25.03 29.90 -169.99 -5.08 19.95 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 18 C 0.04 0.59 6.81 37.61 0.26 0.85 16 19 O -0.38 -5.61 10.86 -35.23 -0.38 -5.99 16 20 C 0.04 0.52 7.75 37.61 0.29 0.81 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.66 6.53 -51.93 -0.34 0.32 16 23 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16 24 H 0.08 1.34 7.59 -51.93 -0.39 0.95 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 27 H 0.03 0.56 7.34 -51.93 -0.38 0.18 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.84 7.51 -51.93 -0.39 0.45 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.87 8.11 -51.93 -0.42 1.45 16 32 H 0.27 7.83 6.97 -40.82 -0.28 7.55 16 33 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 34 H 0.09 1.17 7.33 -51.93 -0.38 0.79 16 35 H 0.09 1.06 7.33 -51.93 -0.38 0.68 16 36 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 283.29 15.07 4.27 4.27 Total: -1.00 -29.18 283.29 -7.81 -36.99 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.84 Total: 0.08 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -0.29 Total: -18.33 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.48 Total: -36.97 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.38 Total: -5.99 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.95 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.18 -7.81 -36.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.721 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds