Wall clock time and date at job start Mon Mar 30 2020 02:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47453 * 2 1 4 4 C 1.52990 * 113.00278 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47516 * 48.09831 * 4 3 2 6 6 C 1.47483 * 110.99665 * 79.56078 * 5 4 3 7 7 C 1.53631 * 87.95079 * 138.65462 * 6 5 4 8 8 C 1.47476 * 111.00279 * 175.53234 * 5 4 3 9 9 H 1.08998 * 113.47902 * 336.12639 * 8 5 4 10 10 C 1.50703 * 113.47444 * 106.53377 * 8 5 4 11 11 H 1.08000 * 119.99939 * 358.89576 * 10 8 5 12 12 C 1.37874 * 119.99718 * 178.89968 * 10 8 5 13 13 N 1.31513 * 120.00428 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 119.99702 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46691 * 269.99394 * 14 12 10 16 16 H 1.48506 * 109.46773 * 149.99840 * 14 12 10 17 17 H 1.48494 * 109.47051 * 29.99528 * 14 12 10 18 18 C 1.54041 * 113.92276 * 311.93543 * 3 2 1 19 19 O 1.44178 * 85.51658 * 91.65512 * 18 3 2 20 20 C 1.44177 * 93.33999 * 24.19122 * 19 18 3 21 21 H 1.09005 * 109.47433 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47401 * 299.99569 * 1 2 3 23 23 H 1.09004 * 109.47248 * 60.00038 * 1 2 3 24 24 H 1.09006 * 109.47113 * 240.00080 * 2 1 3 25 25 H 1.08997 * 109.47241 * 120.00320 * 2 1 3 26 26 H 1.09004 * 109.47358 * 288.09908 * 4 3 2 27 27 H 1.08996 * 109.47400 * 168.10522 * 4 3 2 28 28 H 1.08997 * 113.47541 * 253.47597 * 6 5 4 29 29 H 1.09000 * 113.47371 * 23.93947 * 6 5 4 30 30 H 1.08998 * 114.20732 * 220.39138 * 7 6 5 31 31 H 1.09000 * 114.17034 * 87.65225 * 7 6 5 32 32 H 0.97003 * 119.99617 * 0.02562 * 13 12 10 33 33 H 1.09004 * 113.86048 * 205.80361 * 18 3 2 34 34 H 1.08998 * 113.86544 * 337.50924 * 18 3 2 35 35 H 1.09005 * 113.86489 * 221.65481 * 20 19 18 36 36 H 1.09005 * 113.98625 * 89.96721 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5670 1.5366 -0.0006 5 7 4.1124 0.6437 -1.0318 6 6 4.0148 1.2586 -2.3688 7 6 5.4225 0.7169 -2.6601 8 6 5.5766 0.7867 -1.1344 9 1 5.9449 1.7490 -0.7787 10 6 6.3357 -0.3785 -0.5536 11 1 5.8004 -1.2007 -0.1022 12 6 7.7136 -0.3948 -0.5987 13 7 8.3655 0.6062 -1.1489 14 14 8.6545 -1.8395 0.1205 15 1 8.9522 -1.5735 1.5509 16 1 9.9264 -2.0218 -0.6242 17 1 7.8331 -3.0712 0.0065 18 6 1.3611 2.3451 -1.0475 19 8 0.4264 2.6674 0.0019 20 6 1.3613 2.3421 1.0501 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.9498 1.2402 0.9760 27 1 3.8677 2.5626 -0.2124 28 1 3.2401 0.8159 -2.9949 29 1 3.9661 2.3473 -2.3434 30 1 6.0638 1.4092 -3.2056 31 1 5.4364 -0.2953 -3.0642 32 1 7.8769 1.3562 -1.5226 33 1 1.9739 3.1882 -1.3666 34 1 0.9182 1.7984 -1.8800 35 1 0.9186 1.7931 1.8812 36 1 1.9751 3.1830 1.3731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260950093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:39 Heat of formation + Delta-G solvation = -5.725402 kcal Electronic energy + Delta-G solvation = -16356.806344 eV Core-core repulsion = 13842.300344 eV Total energy + Delta-G solvation = -2514.506000 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.11164 -40.39028 -35.10483 -34.39012 -31.83610 -28.66903 -28.27480 -27.51957 -24.79536 -24.68559 -23.97388 -20.77963 -19.61545 -18.96398 -17.50401 -17.23912 -16.73355 -16.20134 -15.87308 -15.61022 -15.40423 -14.89419 -14.41405 -13.90081 -13.46253 -13.12919 -13.00553 -12.83505 -12.70102 -12.59704 -12.37596 -12.20207 -11.96357 -11.93384 -11.70075 -11.17927 -11.11437 -10.64038 -10.47777 -10.39689 -9.58310 -8.61735 -6.30772 1.53594 1.61539 1.80185 2.56243 2.72466 3.08975 3.17882 3.39771 3.79320 3.82562 4.01546 4.14422 4.20597 4.33250 4.41054 4.50630 4.56269 4.60570 4.63022 4.69676 4.71290 4.79339 4.89627 5.03757 5.04958 5.13418 5.20323 5.23860 5.32537 5.34011 5.46570 5.54661 6.07613 6.20274 6.47200 6.63803 7.47045 8.78019 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040580 B = 0.007071 C = 0.006673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.825418 B = 3958.805238 C = 4194.969619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 C -0.112 4.112 4 C 0.035 3.965 5 N -0.465 5.465 6 C 0.010 3.990 7 C -0.144 4.144 8 C 0.147 3.853 9 H 0.003 0.997 10 C -0.586 4.586 11 H 0.043 0.957 12 C -0.029 4.029 13 N -0.936 5.936 14 Si 1.116 2.884 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.046 3.954 19 O -0.389 6.389 20 C 0.044 3.956 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.257 0.743 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.345 2.002 1.346 13.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.094 4.094 5 N -0.187 5.187 6 C -0.118 4.118 7 C -0.183 4.183 8 C 0.039 3.961 9 H 0.020 0.980 10 C -0.625 4.625 11 H 0.062 0.938 12 C -0.227 4.227 13 N -0.574 5.574 14 Si 0.939 3.061 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.030 4.030 19 O -0.308 6.308 20 C -0.033 4.033 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.442 0.859 1.774 12.597 hybrid contribution -0.606 1.642 -0.341 1.783 sum -13.048 2.501 1.433 13.362 Atomic orbital electron populations 1.21754 0.94340 1.01238 1.02238 1.21033 0.95907 0.92902 1.02374 1.23606 0.93342 0.97721 0.96544 1.22564 0.94999 0.94628 0.97244 1.68892 1.08473 1.39956 1.01393 1.23718 0.97293 0.97748 0.93086 1.23192 0.96578 0.99921 0.98601 1.20853 0.87095 0.94832 0.93330 0.97956 1.22079 0.93521 1.05553 1.41332 0.93817 1.27150 0.96535 1.03534 0.95490 1.70891 1.39289 1.09160 1.38022 0.82927 0.74688 0.72404 0.76127 1.20138 1.20818 1.19931 1.24122 0.89785 0.96591 0.92512 1.89605 1.33311 1.90459 1.17422 1.24137 0.89766 0.96870 0.92497 0.92426 0.92465 0.92753 0.91760 0.92511 0.92478 0.94821 0.89139 0.91583 0.93281 0.91361 0.93332 0.90276 0.88431 0.87834 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.63 71.98 0.62 -2.58 16 2 C -0.08 -2.36 5.34 30.59 0.16 -2.20 16 3 C -0.11 -3.11 1.11 -51.48 -0.06 -3.16 16 4 C 0.03 1.22 4.34 86.30 0.37 1.60 16 5 N -0.47 -19.02 5.22 -906.03 -4.73 -23.75 16 6 C 0.01 0.37 6.63 83.61 0.55 0.92 16 7 C -0.14 -6.38 7.82 30.98 0.24 -6.13 16 8 C 0.15 7.33 2.26 41.44 0.09 7.42 16 9 H 0.00 0.15 7.41 -2.39 -0.02 0.13 16 10 C -0.59 -33.06 9.05 25.60 0.23 -32.83 16 11 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 12 C -0.03 -1.63 5.46 84.65 0.46 -1.17 16 13 N -0.94 -56.31 13.65 21.45 0.29 -56.01 16 14 Si 1.12 50.39 29.90 68.60 2.05 52.44 16 15 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.05 1.17 6.81 72.28 0.49 1.66 16 19 O -0.39 -10.34 10.86 -148.98 -1.62 -11.96 16 20 C 0.04 1.07 7.75 72.27 0.56 1.63 16 21 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 22 H 0.06 1.27 6.53 -2.39 -0.02 1.26 16 23 H 0.05 1.25 6.54 -2.38 -0.02 1.24 16 24 H 0.06 2.02 7.59 -2.38 -0.02 2.00 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 27 H 0.03 1.16 7.34 -2.39 -0.02 1.15 16 28 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.07 2.14 7.51 -2.39 -0.02 2.12 16 30 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 3.16 8.11 -2.39 -0.02 3.14 16 32 H 0.26 15.50 6.97 -92.71 -0.65 14.85 16 33 H 0.08 1.92 7.85 -2.38 -0.02 1.90 16 34 H 0.10 2.29 7.33 -2.39 -0.02 2.27 16 35 H 0.10 2.20 7.33 -2.38 -0.02 2.18 16 36 H 0.08 1.91 8.10 -2.38 -0.02 1.89 16 Total: -1.00 -62.36 283.29 0.90 -61.46 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 1.16 Total: 12.65 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 3.74 Total: -34.84 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -4.43 Total: -79.76 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -1.62 Total: -11.96 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 2.05 Total: 52.44 kcal Total: -62.36 0.90 -61.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.735 kcal (2) G-P(sol) polarization free energy of solvation -62.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds