Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 112.99890 * 2 1 4 4 N 1.46908 * 109.47134 * 48.17731 * 3 2 1 5 5 C 1.47481 * 110.99437 * 265.96893 * 4 3 2 6 6 C 1.53510 * 87.93001 * 221.29432 * 5 4 3 7 7 C 1.47481 * 111.00050 * 170.00096 * 4 3 2 8 8 H 1.08997 * 113.47696 * 23.87172 * 7 4 3 9 9 C 1.53001 * 113.47305 * 253.46738 * 7 4 3 10 10 C 1.50694 * 109.47168 * 65.00039 * 9 7 4 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 7 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99854 * 179.72538 * 12 10 9 15 15 H 1.48498 * 109.47200 * 59.99994 * 14 12 10 16 16 H 1.48498 * 109.46671 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47156 * 300.00008 * 14 12 10 18 18 C 1.54036 * 113.92880 * 131.93217 * 2 1 3 19 19 O 1.44173 * 85.51571 * 91.66222 * 18 2 1 20 20 C 1.44176 * 93.34264 * 24.19253 * 19 18 2 21 21 H 1.09000 * 109.46854 * 59.99933 * 1 2 3 22 22 H 1.09003 * 109.46776 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47104 * 299.99878 * 1 2 3 24 24 H 1.09001 * 109.47477 * 288.17518 * 3 2 1 25 25 H 1.09005 * 109.47130 * 168.17046 * 3 2 1 26 26 H 1.08997 * 113.48014 * 336.06365 * 5 4 3 27 27 H 1.09000 * 113.47701 * 106.46937 * 5 4 3 28 28 H 1.09008 * 114.17311 * 272.37834 * 6 5 4 29 29 H 1.09002 * 114.17074 * 139.67076 * 6 5 4 30 30 H 1.08998 * 109.46837 * 305.00061 * 9 7 4 31 31 H 1.09002 * 109.46926 * 184.99864 * 9 7 4 32 32 H 0.97001 * 119.99646 * 180.02562 * 13 12 10 33 33 H 1.09002 * 113.86611 * 205.81191 * 18 2 1 34 34 H 1.08999 * 113.86000 * 337.51182 * 18 2 1 35 35 H 1.08998 * 113.86812 * 221.65417 * 20 19 18 36 36 H 1.09005 * 113.97808 * 89.96495 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 7 1.4689 2.2200 1.0322 5 6 0.3452 2.9875 0.4635 6 6 0.7983 4.1785 1.3194 7 6 2.1728 3.5014 1.2261 8 1 2.7536 3.8135 0.3582 9 6 2.9737 3.5659 2.5282 10 6 4.0909 2.5557 2.4812 11 1 4.2170 1.9299 1.6100 12 6 4.9523 2.4303 3.5505 13 7 4.7986 3.1919 4.6116 14 14 6.3326 1.1727 3.4955 15 1 7.2267 1.4690 2.3474 16 1 7.1114 1.2371 4.7582 17 1 5.7573 -0.1871 3.3368 18 6 2.1548 -0.9409 1.0474 19 8 2.1471 -1.9295 -0.0019 20 6 2.1520 -0.9397 -1.0501 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.9747 1.8681 -0.9764 25 1 3.1957 1.3498 0.2107 26 1 0.4375 3.1629 -0.6083 27 1 -0.6331 2.5972 0.7439 28 1 0.3751 4.1930 2.3239 29 1 0.7396 5.1411 0.8114 30 1 2.3176 3.3431 3.3696 31 1 3.3922 4.5651 2.6482 32 1 5.4048 3.1039 5.3637 33 1 3.1539 -0.6441 1.3666 34 1 1.4917 -1.1762 1.8800 35 1 1.4869 -1.1741 -1.8812 36 1 3.1495 -0.6413 -1.3731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260975361.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = 16.639860 kcal Electronic energy + Delta-G solvation = -16393.432127 eV Core-core repulsion = 13879.895958 eV Total energy + Delta-G solvation = -2513.536170 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56552 -39.14835 -33.13014 -32.63737 -29.18238 -28.75675 -26.36588 -26.06097 -24.47001 -23.17849 -21.49961 -18.93733 -18.43771 -16.38084 -16.01486 -15.76017 -15.45390 -14.97397 -14.66566 -14.10717 -13.54927 -13.21348 -12.57862 -12.38642 -12.17051 -11.76485 -11.57936 -11.31387 -11.10662 -11.02251 -10.89031 -10.75369 -10.48121 -10.26721 -10.07780 -9.80256 -9.31826 -9.04864 -8.92803 -8.31734 -8.09660 -5.95027 -3.95294 3.34589 3.39685 3.41611 4.00229 4.32449 4.48735 4.77684 5.05947 5.14157 5.28104 5.38965 5.41721 5.45247 5.63623 5.67028 5.80237 5.85705 5.95091 6.04647 6.09357 6.10761 6.14430 6.24341 6.27868 6.38846 6.51410 6.58210 6.61840 6.80709 7.11724 7.57263 7.69198 8.00549 8.06249 8.46778 9.08421 9.66679 11.16473 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.011043 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.847462 B = 2535.046123 C = 3614.438390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.029 3.971 4 N -0.445 5.445 5 C -0.009 4.009 6 C -0.150 4.150 7 C 0.043 3.957 8 H 0.059 0.941 9 C 0.038 3.962 10 C -0.504 4.504 11 H 0.052 0.948 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.884 3.116 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.276 1.276 18 C 0.054 3.946 19 O -0.390 6.390 20 C 0.038 3.962 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.035 0.965 25 H 0.087 0.913 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.025 0.975 31 H 0.018 0.982 32 H 0.259 0.741 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.851 -2.893 -9.982 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.114 4.114 3 C -0.100 4.100 4 N -0.167 5.167 5 C -0.138 4.138 6 C -0.188 4.188 7 C -0.065 4.065 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.542 4.542 11 H 0.070 0.930 12 C -0.143 4.143 13 N -0.536 5.536 14 Si 0.712 3.288 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.023 4.023 19 O -0.309 6.309 20 C -0.039 4.039 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.093 0.907 24 H 0.053 0.947 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.862 -3.637 -9.251 12.674 hybrid contribution 1.097 -0.049 -0.759 1.335 sum -6.765 -3.686 -10.010 12.632 Atomic orbital electron populations 1.21521 0.92552 1.01441 1.02353 1.23503 0.97240 0.95412 0.95283 1.22762 1.00328 0.93188 0.93759 1.68908 1.04973 1.11691 1.31136 1.23895 0.97741 0.95145 0.97035 1.23262 0.98580 0.96367 1.00572 1.23465 0.94082 0.87767 1.01221 0.92304 1.19012 0.94063 0.96762 0.90085 1.21053 1.12042 1.19521 1.01631 0.92957 1.24963 0.97715 0.95985 0.95659 1.69941 1.38126 1.39525 1.06055 0.86791 0.82481 0.82336 0.77201 1.20470 1.21355 1.20177 1.24046 1.01221 0.85310 0.91686 1.89593 1.95810 1.28160 1.17337 1.24028 1.00162 0.87388 0.92352 0.92995 0.92772 0.90720 0.94664 0.89468 0.92695 0.90765 0.89281 0.91969 0.95659 0.96345 0.93080 0.89429 0.89295 0.89857 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 7.94 37.16 0.30 -1.33 16 2 C -0.11 -1.72 1.23 -153.43 -0.19 -1.91 16 3 C 0.03 0.48 4.38 -3.82 -0.02 0.46 16 4 N -0.45 -8.12 5.43 -236.50 -1.28 -9.40 16 5 C -0.01 -0.13 6.34 -7.55 -0.05 -0.18 16 6 C -0.15 -2.46 8.01 -26.20 -0.21 -2.67 16 7 C 0.04 0.86 3.01 -71.44 -0.21 0.65 16 8 H 0.06 1.15 7.91 -51.93 -0.41 0.74 16 9 C 0.04 0.96 5.03 -27.89 -0.14 0.82 16 10 C -0.50 -13.74 8.94 -34.44 -0.31 -14.05 16 11 H 0.05 1.38 5.58 -52.49 -0.29 1.08 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 14 Si 0.88 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.05 0.92 8.36 37.61 0.31 1.23 16 19 O -0.39 -6.61 12.37 -35.23 -0.44 -7.05 16 20 C 0.04 0.53 8.36 37.61 0.31 0.85 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 23 H 0.07 1.07 6.53 -51.93 -0.34 0.73 16 24 H 0.04 0.53 7.30 -51.93 -0.38 0.15 16 25 H 0.09 1.66 5.76 -51.93 -0.30 1.36 16 26 H 0.05 0.75 7.42 -51.93 -0.39 0.36 16 27 H 0.07 1.03 7.34 -51.93 -0.38 0.64 16 28 H 0.09 1.52 8.07 -51.92 -0.42 1.10 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.09 1.65 7.96 -51.93 -0.41 1.23 16 34 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16 35 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 286.07 15.07 4.31 4.31 Total: -1.00 -29.61 286.07 -7.82 -37.43 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.82 Total: -1.24 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -0.30 Total: -14.62 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.55 Total: -35.44 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.44 Total: -7.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.61 -7.82 -37.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975361.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.067 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds