Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 112.99890 * 2 1 4 4 N 1.46908 * 109.47134 * 48.17731 * 3 2 1 5 5 C 1.47481 * 110.99437 * 265.96893 * 4 3 2 6 6 C 1.53510 * 87.93001 * 221.29432 * 5 4 3 7 7 C 1.47481 * 111.00050 * 170.00096 * 4 3 2 8 8 H 1.08997 * 113.47696 * 23.87172 * 7 4 3 9 9 C 1.53001 * 113.47305 * 253.46738 * 7 4 3 10 10 C 1.50694 * 109.47168 * 65.00039 * 9 7 4 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 7 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99854 * 179.72538 * 12 10 9 15 15 H 1.48498 * 109.47200 * 59.99994 * 14 12 10 16 16 H 1.48498 * 109.46671 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47156 * 300.00008 * 14 12 10 18 18 C 1.54036 * 113.92880 * 131.93217 * 2 1 3 19 19 O 1.44173 * 85.51571 * 91.66222 * 18 2 1 20 20 C 1.44176 * 93.34264 * 24.19253 * 19 18 2 21 21 H 1.09000 * 109.46854 * 59.99933 * 1 2 3 22 22 H 1.09003 * 109.46776 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47104 * 299.99878 * 1 2 3 24 24 H 1.09001 * 109.47477 * 288.17518 * 3 2 1 25 25 H 1.09005 * 109.47130 * 168.17046 * 3 2 1 26 26 H 1.08997 * 113.48014 * 336.06365 * 5 4 3 27 27 H 1.09000 * 113.47701 * 106.46937 * 5 4 3 28 28 H 1.09008 * 114.17311 * 272.37834 * 6 5 4 29 29 H 1.09002 * 114.17074 * 139.67076 * 6 5 4 30 30 H 1.08998 * 109.46837 * 305.00061 * 9 7 4 31 31 H 1.09002 * 109.46926 * 184.99864 * 9 7 4 32 32 H 0.97001 * 119.99646 * 180.02562 * 13 12 10 33 33 H 1.09002 * 113.86611 * 205.81191 * 18 2 1 34 34 H 1.08999 * 113.86000 * 337.51182 * 18 2 1 35 35 H 1.08998 * 113.86812 * 221.65417 * 20 19 18 36 36 H 1.09005 * 113.97808 * 89.96495 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 7 1.4689 2.2200 1.0322 5 6 0.3452 2.9875 0.4635 6 6 0.7983 4.1785 1.3194 7 6 2.1728 3.5014 1.2261 8 1 2.7536 3.8135 0.3582 9 6 2.9737 3.5659 2.5282 10 6 4.0909 2.5557 2.4812 11 1 4.2170 1.9299 1.6100 12 6 4.9523 2.4303 3.5505 13 7 4.7986 3.1919 4.6116 14 14 6.3326 1.1727 3.4955 15 1 7.2267 1.4690 2.3474 16 1 7.1114 1.2371 4.7582 17 1 5.7573 -0.1871 3.3368 18 6 2.1548 -0.9409 1.0474 19 8 2.1471 -1.9295 -0.0019 20 6 2.1520 -0.9397 -1.0501 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.9747 1.8681 -0.9764 25 1 3.1957 1.3498 0.2107 26 1 0.4375 3.1629 -0.6083 27 1 -0.6331 2.5972 0.7439 28 1 0.3751 4.1930 2.3239 29 1 0.7396 5.1411 0.8114 30 1 2.3176 3.3431 3.3696 31 1 3.3922 4.5651 2.6482 32 1 5.4048 3.1039 5.3637 33 1 3.1539 -0.6441 1.3666 34 1 1.4917 -1.1762 1.8800 35 1 1.4869 -1.1741 -1.8812 36 1 3.1495 -0.6413 -1.3731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260975361.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = -4.016386 kcal Electronic energy + Delta-G solvation = -16394.327849 eV Core-core repulsion = 13879.895958 eV Total energy + Delta-G solvation = -2514.431892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.83835 -40.51848 -35.11097 -34.06665 -31.10715 -30.02181 -27.53332 -27.33595 -26.30677 -24.48576 -23.21951 -20.37289 -19.68042 -18.43894 -17.32551 -17.06457 -16.78840 -16.53558 -16.28177 -15.63838 -14.98547 -14.43461 -14.30429 -13.93650 -13.42628 -13.15568 -13.09417 -12.90071 -12.85059 -12.52567 -12.38510 -12.32773 -12.07993 -12.02423 -11.42096 -11.18039 -10.83374 -10.74287 -10.55723 -10.47746 -9.48930 -8.13716 -6.20114 1.37379 1.39509 1.46067 2.41629 2.79126 3.05749 3.20899 3.50658 3.77314 3.88570 4.03562 4.20553 4.26510 4.43114 4.47394 4.53666 4.63077 4.64741 4.74568 4.84339 4.93306 5.00370 5.01870 5.04542 5.05696 5.21996 5.23579 5.35617 5.42352 5.49241 5.60175 5.86301 5.87475 6.32699 6.47349 6.94112 7.46068 8.98130 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.021003 B = 0.011043 C = 0.007745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.847462 B = 2535.046123 C = 3614.438390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.107 4.107 3 C 0.032 3.968 4 N -0.469 5.469 5 C 0.007 3.993 6 C -0.142 4.142 7 C 0.039 3.961 8 H 0.064 0.936 9 C 0.044 3.956 10 C -0.510 4.510 11 H 0.059 0.941 12 C 0.001 3.999 13 N -0.936 5.936 14 Si 0.947 3.053 15 H -0.268 1.268 16 H -0.286 1.286 17 H -0.272 1.272 18 C 0.044 3.956 19 O -0.405 6.405 20 C 0.042 3.958 21 H 0.075 0.925 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.087 0.913 30 H -0.008 1.008 31 H -0.009 1.009 32 H 0.259 0.741 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.882 -3.516 -12.321 15.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.108 4.108 3 C -0.096 4.096 4 N -0.191 5.191 5 C -0.122 4.122 6 C -0.180 4.180 7 C -0.070 4.070 8 H 0.082 0.918 9 C 0.006 3.994 10 C -0.548 4.548 11 H 0.077 0.923 12 C -0.196 4.196 13 N -0.577 5.577 14 Si 0.773 3.227 15 H -0.193 1.193 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.033 4.033 19 O -0.325 6.325 20 C -0.035 4.035 21 H 0.094 0.906 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.900 -4.265 -11.614 15.241 hybrid contribution 1.410 0.155 -0.034 1.418 sum -7.491 -4.110 -11.648 14.445 Atomic orbital electron populations 1.21481 0.90762 1.01996 1.02954 1.23491 0.98486 0.94095 0.94695 1.22699 0.98526 0.94082 0.94343 1.68842 1.05902 1.11344 1.33045 1.23888 0.97158 0.93146 0.97969 1.23203 0.95710 0.98276 1.00801 1.23304 0.95188 0.90275 0.98265 0.91827 1.18850 0.93680 0.94644 0.92202 1.21476 1.12237 1.19482 1.01585 0.92290 1.25805 1.00387 0.97947 0.95468 1.70079 1.39373 1.41426 1.06844 0.85777 0.79619 0.79907 0.77437 1.19282 1.21197 1.19713 1.23968 1.00072 0.86730 0.92486 1.89576 1.95836 1.29007 1.18064 1.24235 1.01102 0.85845 0.92292 0.90595 0.92307 0.91801 0.92263 0.92526 0.90171 0.89055 0.90540 0.89481 0.98958 0.99047 0.93178 0.92046 0.89512 0.86819 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 7.94 71.98 0.57 -2.13 16 2 C -0.11 -3.01 1.23 -51.48 -0.06 -3.08 16 3 C 0.03 1.02 4.38 86.30 0.38 1.39 16 4 N -0.47 -16.42 5.43 -902.16 -4.90 -21.32 16 5 C 0.01 0.18 6.34 83.57 0.53 0.71 16 6 C -0.14 -4.40 8.01 30.94 0.25 -4.15 16 7 C 0.04 1.52 3.01 42.19 0.13 1.65 16 8 H 0.06 2.42 7.91 -2.39 -0.02 2.40 16 9 C 0.04 2.27 5.03 29.85 0.15 2.42 16 10 C -0.51 -28.43 8.94 25.60 0.23 -28.20 16 11 H 0.06 3.16 5.58 -2.91 -0.02 3.14 16 12 C 0.00 0.04 5.46 84.66 0.46 0.51 16 13 N -0.94 -57.62 13.29 21.45 0.28 -57.33 16 14 Si 0.95 45.16 29.54 68.60 2.03 47.18 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 17 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 18 C 0.04 1.50 8.36 72.27 0.60 2.10 16 19 O -0.41 -13.16 12.37 -148.98 -1.84 -15.01 16 20 C 0.04 1.06 8.36 72.27 0.60 1.66 16 21 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 23 H 0.06 1.65 6.53 -2.39 -0.02 1.64 16 24 H 0.06 1.57 7.30 -2.39 -0.02 1.55 16 25 H 0.06 2.13 5.76 -2.38 -0.01 2.11 16 26 H 0.08 1.77 7.42 -2.39 -0.02 1.75 16 27 H 0.09 2.16 7.34 -2.39 -0.02 2.14 16 28 H 0.08 2.56 8.07 -2.38 -0.02 2.54 16 29 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 30 H -0.01 -0.46 8.08 -2.39 -0.02 -0.48 16 31 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.06 2.37 7.96 -2.39 -0.02 2.35 16 34 H 0.09 2.90 8.10 -2.39 -0.02 2.89 16 35 H 0.11 2.19 8.10 -2.39 -0.02 2.17 16 36 H 0.08 1.97 8.10 -2.38 -0.02 1.95 16 Total: -1.00 -65.27 286.07 0.45 -64.82 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.04 Total: 8.77 kcal Atomic # 6 Polarization: -30.95 SS G_CDS: 3.84 Total: -27.11 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -4.61 Total: -78.66 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.84 Total: -15.01 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.27 0.45 -64.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260975361.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.805 kcal (2) G-P(sol) polarization free energy of solvation -65.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds