Wall clock time and date at job start Mon Mar 30 2020 02:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 113.00121 * 2 1 4 4 C 1.53006 * 109.46623 * 48.17821 * 3 2 1 5 5 N 1.46902 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.47481 * 111.00304 * 265.96805 * 5 4 3 7 7 C 1.53506 * 87.93685 * 221.30251 * 6 5 4 8 8 C 1.50694 * 114.34508 * 139.68584 * 7 6 5 9 9 H 1.08010 * 120.00014 * 266.07451 * 8 7 6 10 10 C 1.37872 * 120.00084 * 86.07749 * 8 7 6 11 11 N 1.31508 * 120.00041 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00003 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47508 * 89.99724 * 12 10 8 14 14 H 1.48504 * 109.47137 * 209.99938 * 12 10 8 15 15 H 1.48495 * 109.47145 * 329.99523 * 12 10 8 16 16 C 1.47479 * 110.99664 * 170.00118 * 5 4 3 17 17 C 1.54028 * 113.92928 * 131.94092 * 2 1 3 18 18 O 1.44180 * 85.52314 * 91.65404 * 17 2 1 19 19 C 1.44180 * 93.33568 * 24.19335 * 18 17 2 20 20 H 1.08994 * 109.47111 * 59.99210 * 1 2 3 21 21 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46482 * 299.99369 * 1 2 3 23 23 H 1.09000 * 109.47486 * 288.17992 * 3 2 1 24 24 H 1.09001 * 109.47362 * 168.17270 * 3 2 1 25 25 H 1.08993 * 109.46955 * 300.00075 * 4 3 2 26 26 H 1.09000 * 109.47050 * 59.99904 * 4 3 2 27 27 H 1.09003 * 113.47667 * 336.07115 * 6 5 4 28 28 H 1.08997 * 113.47252 * 106.53050 * 6 5 4 29 29 H 1.09001 * 114.16634 * 272.38208 * 7 6 5 30 30 H 0.97004 * 119.99991 * 180.02562 * 11 10 8 31 31 H 1.09000 * 113.47874 * 253.46965 * 16 5 4 32 32 H 1.09005 * 113.47821 * 23.87729 * 16 5 4 33 33 H 1.09006 * 113.86764 * 205.80491 * 17 2 1 34 34 H 1.09003 * 113.86422 * 337.50618 * 17 2 1 35 35 H 1.08992 * 113.86440 * 221.65918 * 19 18 17 36 36 H 1.09005 * 113.98372 * 89.96336 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1279 1.4083 0.0000 4 6 1.4416 2.2536 1.0751 5 7 2.0161 3.6056 1.0755 6 6 3.1051 3.7170 2.0637 7 6 2.5514 5.0995 2.4357 8 6 2.5671 5.3982 3.9126 9 1 1.6921 5.1981 4.5134 10 6 3.6984 5.9269 4.4971 11 7 4.7640 6.1701 3.7657 12 14 3.7181 6.2965 6.3281 13 1 4.1954 5.1014 7.0692 14 1 4.6287 7.4394 6.5926 15 1 2.3459 6.6426 6.7780 16 6 1.2264 4.5151 1.9265 17 6 2.1548 -0.9410 1.0472 18 8 2.1470 -1.9297 -0.0021 19 6 2.1519 -0.9397 -1.0503 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.9747 1.8681 -0.9763 24 1 3.1957 1.3498 0.2106 25 1 0.3738 2.3121 0.8645 26 1 1.5948 1.7938 2.0514 27 1 3.0342 2.9890 2.8719 28 1 4.0974 3.7531 1.6141 29 1 2.9424 5.9152 1.8274 30 1 5.5600 6.5418 4.1769 31 1 0.6264 5.2278 1.3607 32 1 0.6532 4.0000 2.6975 33 1 3.1540 -0.6444 1.3664 34 1 1.4918 -1.1764 1.8798 35 1 1.4868 -1.1740 -1.8813 36 1 3.1493 -0.6413 -1.3733 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261007004.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:10 Heat of formation + Delta-G solvation = 11.462402 kcal Electronic energy + Delta-G solvation = -15697.163280 eV Core-core repulsion = 13183.402599 eV Total energy + Delta-G solvation = -2513.760681 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74352 -38.84862 -34.22906 -32.53608 -29.89934 -27.20906 -26.64754 -26.14056 -24.76129 -23.89485 -21.12420 -18.76947 -18.56042 -16.65760 -16.11147 -15.89942 -15.82571 -14.78241 -14.55310 -14.04734 -13.94493 -13.45544 -13.09568 -12.47194 -12.20992 -11.95343 -11.80521 -11.72524 -11.38228 -11.00086 -10.94780 -10.67208 -10.44216 -10.32715 -10.04211 -9.75628 -9.56468 -9.16534 -8.93857 -8.44900 -7.99111 -6.06699 -4.11284 3.27450 3.34742 3.37623 3.67288 4.10175 4.38743 4.64075 4.91082 5.02173 5.22300 5.26901 5.29386 5.39109 5.43348 5.59315 5.73159 5.79826 5.81519 5.92512 6.02242 6.06678 6.10167 6.12629 6.28377 6.34779 6.48123 6.50449 6.67274 6.76963 7.13093 7.19902 7.71570 7.90469 8.09349 8.36487 8.91972 9.53841 11.02944 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045181 B = 0.005343 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.587216 B = 5239.709404 C = 5394.844263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.127 4.127 3 C -0.100 4.100 4 C 0.022 3.978 5 N -0.487 5.487 6 C 0.005 3.995 7 C 0.041 3.959 8 C -0.517 4.517 9 H 0.057 0.943 10 C 0.067 3.933 11 N -0.887 5.887 12 Si 0.891 3.109 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.273 1.273 16 C -0.005 4.005 17 C 0.041 3.959 18 O -0.385 6.385 19 C 0.041 3.959 20 H 0.062 0.938 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.262 0.738 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 -10.893 -6.728 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.128 4.128 3 C -0.138 4.138 4 C -0.107 4.107 5 N -0.209 5.209 6 C -0.124 4.124 7 C 0.022 3.978 8 C -0.555 4.555 9 H 0.075 0.925 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.198 1.198 16 C -0.134 4.134 17 C -0.036 4.036 18 O -0.304 6.304 19 C -0.036 4.036 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.612 -10.985 -7.443 14.407 hybrid contribution -0.015 0.003 1.845 1.845 sum -5.627 -10.981 -5.597 13.549 Atomic orbital electron populations 1.21590 0.92324 1.01979 1.02670 1.23647 0.97381 0.96199 0.95526 1.21484 0.99784 0.92249 1.00261 1.22637 0.98667 0.92004 0.97390 1.68814 1.07653 1.05580 1.38892 1.24087 0.94987 1.01524 0.91805 1.20094 0.89064 0.92510 0.96170 1.21038 0.99081 1.42552 0.92813 0.92481 1.25014 0.95675 0.94899 0.97997 1.69966 1.03215 1.43676 1.35528 0.86622 0.78020 0.77985 0.85550 1.20658 1.21116 1.19816 1.23978 0.98982 0.95997 0.94437 1.24130 1.00650 0.86565 0.92238 1.89627 1.95779 1.27849 1.17138 1.24068 1.00463 0.86754 0.92291 0.91885 0.92242 0.91549 0.91045 0.91634 0.91850 0.94435 0.92991 0.91966 0.91854 0.92858 0.92134 0.92972 0.89976 0.89386 0.89462 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 8.41 37.16 0.31 -1.05 16 2 C -0.13 -1.48 1.08 -153.43 -0.17 -1.65 16 3 C -0.10 -1.37 5.12 -26.73 -0.14 -1.51 16 4 C 0.02 0.36 4.19 -3.82 -0.02 0.34 16 5 N -0.49 -9.72 6.33 -244.66 -1.55 -11.27 16 6 C 0.00 0.11 7.28 -7.56 -0.06 0.06 16 7 C 0.04 1.02 3.76 -91.25 -0.34 0.67 16 8 C -0.52 -14.02 8.83 -34.45 -0.30 -14.32 16 9 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 10 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -25.51 13.26 55.43 0.74 -24.77 16 12 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 C -0.01 -0.11 7.25 -7.56 -0.05 -0.16 16 17 C 0.04 0.50 8.35 37.60 0.31 0.81 16 18 O -0.39 -5.18 12.37 -35.23 -0.44 -5.62 16 19 C 0.04 0.46 8.36 37.61 0.31 0.77 16 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 22 H 0.07 0.71 6.68 -51.93 -0.35 0.37 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.96 7.93 -51.93 -0.41 0.54 16 25 H 0.06 0.95 6.55 -51.93 -0.34 0.61 16 26 H 0.04 0.63 7.30 -51.93 -0.38 0.25 16 27 H 0.05 1.19 7.38 -51.93 -0.38 0.81 16 28 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 33 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 34 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 291.77 15.07 4.40 4.40 Total: -1.00 -28.63 291.77 -8.13 -36.76 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.02 Total: -1.12 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.23 Total: -14.29 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.81 Total: -36.05 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.44 Total: -5.62 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.63 -8.13 -36.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261007004.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.219 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds