Wall clock time and date at job start Mon Mar 30 2020 02:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 113.00121 * 2 1 4 4 C 1.53006 * 109.46623 * 48.17821 * 3 2 1 5 5 N 1.46902 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.47481 * 111.00304 * 265.96805 * 5 4 3 7 7 C 1.53506 * 87.93685 * 221.30251 * 6 5 4 8 8 C 1.50694 * 114.34508 * 139.68584 * 7 6 5 9 9 H 1.08010 * 120.00014 * 266.07451 * 8 7 6 10 10 C 1.37872 * 120.00084 * 86.07749 * 8 7 6 11 11 N 1.31508 * 120.00041 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00003 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47508 * 89.99724 * 12 10 8 14 14 H 1.48504 * 109.47137 * 209.99938 * 12 10 8 15 15 H 1.48495 * 109.47145 * 329.99523 * 12 10 8 16 16 C 1.47479 * 110.99664 * 170.00118 * 5 4 3 17 17 C 1.54028 * 113.92928 * 131.94092 * 2 1 3 18 18 O 1.44180 * 85.52314 * 91.65404 * 17 2 1 19 19 C 1.44180 * 93.33568 * 24.19335 * 18 17 2 20 20 H 1.08994 * 109.47111 * 59.99210 * 1 2 3 21 21 H 1.09000 * 109.46954 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46482 * 299.99369 * 1 2 3 23 23 H 1.09000 * 109.47486 * 288.17992 * 3 2 1 24 24 H 1.09001 * 109.47362 * 168.17270 * 3 2 1 25 25 H 1.08993 * 109.46955 * 300.00075 * 4 3 2 26 26 H 1.09000 * 109.47050 * 59.99904 * 4 3 2 27 27 H 1.09003 * 113.47667 * 336.07115 * 6 5 4 28 28 H 1.08997 * 113.47252 * 106.53050 * 6 5 4 29 29 H 1.09001 * 114.16634 * 272.38208 * 7 6 5 30 30 H 0.97004 * 119.99991 * 180.02562 * 11 10 8 31 31 H 1.09000 * 113.47874 * 253.46965 * 16 5 4 32 32 H 1.09005 * 113.47821 * 23.87729 * 16 5 4 33 33 H 1.09006 * 113.86764 * 205.80491 * 17 2 1 34 34 H 1.09003 * 113.86422 * 337.50618 * 17 2 1 35 35 H 1.08992 * 113.86440 * 221.65918 * 19 18 17 36 36 H 1.09005 * 113.98372 * 89.96336 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1279 1.4083 0.0000 4 6 1.4416 2.2536 1.0751 5 7 2.0161 3.6056 1.0755 6 6 3.1051 3.7170 2.0637 7 6 2.5514 5.0995 2.4357 8 6 2.5671 5.3982 3.9126 9 1 1.6921 5.1981 4.5134 10 6 3.6984 5.9269 4.4971 11 7 4.7640 6.1701 3.7657 12 14 3.7181 6.2965 6.3281 13 1 4.1954 5.1014 7.0692 14 1 4.6287 7.4394 6.5926 15 1 2.3459 6.6426 6.7780 16 6 1.2264 4.5151 1.9265 17 6 2.1548 -0.9410 1.0472 18 8 2.1470 -1.9297 -0.0021 19 6 2.1519 -0.9397 -1.0503 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 1.9747 1.8681 -0.9763 24 1 3.1957 1.3498 0.2106 25 1 0.3738 2.3121 0.8645 26 1 1.5948 1.7938 2.0514 27 1 3.0342 2.9890 2.8719 28 1 4.0974 3.7531 1.6141 29 1 2.9424 5.9152 1.8274 30 1 5.5600 6.5418 4.1769 31 1 0.6264 5.2278 1.3607 32 1 0.6532 4.0000 2.6975 33 1 3.1540 -0.6444 1.3664 34 1 1.4918 -1.1764 1.8798 35 1 1.4868 -1.1740 -1.8813 36 1 3.1493 -0.6413 -1.3733 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261007004.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:09 Heat of formation + Delta-G solvation = -8.166068 kcal Electronic energy + Delta-G solvation = -15698.014434 eV Core-core repulsion = 13183.402599 eV Total energy + Delta-G solvation = -2514.611835 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.72442 -40.53115 -35.50683 -34.44000 -31.30520 -28.61816 -27.58061 -27.36794 -26.52358 -25.52879 -22.57372 -20.49056 -19.62075 -18.63039 -17.17046 -16.94054 -16.87546 -16.55325 -16.23371 -15.53437 -15.48030 -14.52315 -14.41603 -13.88348 -13.46336 -13.27143 -13.23296 -13.02736 -12.91375 -12.75127 -12.47290 -12.32433 -11.86292 -11.63093 -11.30107 -11.24272 -11.00191 -10.81765 -10.57937 -10.48405 -9.67630 -8.15604 -6.27104 1.42465 1.43493 1.53984 2.42236 2.76328 3.12045 3.13973 3.37354 3.78478 4.04529 4.12492 4.24964 4.30538 4.37571 4.41696 4.53491 4.60754 4.65696 4.67965 4.82092 4.88180 4.90820 4.94871 5.00078 5.06188 5.16446 5.18962 5.22569 5.30868 5.36215 5.57179 5.62440 5.84998 6.29676 6.42614 6.82540 7.41691 8.94271 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.045181 B = 0.005343 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.587216 B = 5239.709404 C = 5394.844263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.120 4.120 3 C -0.091 4.091 4 C 0.022 3.978 5 N -0.485 5.485 6 C 0.018 3.982 7 C 0.019 3.981 8 C -0.531 4.531 9 H 0.059 0.941 10 C 0.015 3.985 11 N -0.923 5.923 12 Si 0.958 3.042 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.009 3.991 17 C 0.035 3.965 18 O -0.405 6.405 19 C 0.042 3.958 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.034 0.966 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.029 0.971 30 H 0.263 0.737 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 -11.802 -6.626 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.121 4.121 3 C -0.129 4.129 4 C -0.106 4.106 5 N -0.207 5.207 6 C -0.112 4.112 7 C 0.000 4.000 8 C -0.569 4.569 9 H 0.077 0.923 10 C -0.184 4.184 11 N -0.562 5.562 12 Si 0.783 3.217 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.189 1.189 16 C -0.119 4.119 17 C -0.041 4.041 18 O -0.324 6.324 19 C -0.035 4.035 20 H 0.091 0.909 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.936 -11.902 -7.349 15.613 hybrid contribution 0.379 0.277 1.756 1.818 sum -6.557 -11.626 -5.593 14.472 Atomic orbital electron populations 1.21590 0.91153 1.02521 1.03090 1.23600 0.98181 0.94542 0.95771 1.21391 0.98932 0.93187 0.99425 1.22719 0.99764 0.89948 0.98175 1.68756 1.06565 1.07896 1.37507 1.23806 0.95043 1.00053 0.92263 1.20060 0.92345 0.92602 0.95042 1.21379 0.99155 1.42403 0.93954 0.92258 1.25830 0.95289 0.94820 1.02509 1.70093 1.03858 1.44743 1.37460 0.85566 0.78291 0.77819 0.80056 1.20030 1.20952 1.18888 1.23811 0.97305 0.96108 0.94719 1.24219 1.00779 0.86576 0.92551 1.89612 1.95872 1.28863 1.18059 1.24228 1.01214 0.85727 0.92300 0.90856 0.91684 0.91713 0.90704 0.92884 0.89971 0.94745 0.93260 0.93733 0.95285 0.92843 0.90869 0.92080 0.90404 0.88561 0.87544 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.41 71.98 0.61 -1.71 16 2 C -0.12 -2.55 1.08 -51.48 -0.06 -2.60 16 3 C -0.09 -2.35 5.12 30.60 0.16 -2.19 16 4 C 0.02 0.68 4.19 86.31 0.36 1.04 16 5 N -0.49 -18.89 6.33 -927.95 -5.88 -24.77 16 6 C 0.02 0.81 7.28 83.57 0.61 1.42 16 7 C 0.02 0.94 3.76 -11.20 -0.04 0.90 16 8 C -0.53 -28.92 8.83 25.60 0.23 -28.70 16 9 H 0.06 3.13 7.81 -2.91 -0.02 3.10 16 10 C 0.01 0.82 5.46 84.65 0.46 1.28 16 11 N -0.92 -54.10 13.26 21.44 0.28 -53.81 16 12 Si 0.96 42.91 29.54 68.60 2.03 44.93 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 15 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 16 C 0.01 0.38 7.25 83.57 0.61 0.99 16 17 C 0.04 0.81 8.35 72.27 0.60 1.41 16 18 O -0.40 -10.20 12.37 -148.98 -1.84 -12.05 16 19 C 0.04 0.83 8.36 72.28 0.60 1.44 16 20 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 22 H 0.06 1.21 6.68 -2.38 -0.02 1.19 16 23 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.50 7.93 -2.39 -0.02 1.48 16 25 H 0.08 2.22 6.55 -2.39 -0.02 2.21 16 26 H 0.03 1.08 7.30 -2.39 -0.02 1.07 16 27 H 0.05 2.26 7.38 -2.39 -0.02 2.25 16 28 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.03 1.66 8.11 -2.39 -0.02 1.64 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.06 2.40 7.87 -2.38 -0.02 2.38 16 33 H 0.08 1.82 7.96 -2.38 -0.02 1.80 16 34 H 0.10 2.00 8.10 -2.39 -0.02 1.99 16 35 H 0.11 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.09 1.61 8.10 -2.38 -0.02 1.59 16 Total: -1.00 -60.69 291.77 -0.24 -60.93 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.03 Total: 11.49 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 4.14 Total: -26.72 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -5.59 Total: -78.58 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -1.84 Total: -12.05 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -60.69 -0.24 -60.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261007004.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.765 kcal (2) G-P(sol) polarization free energy of solvation -60.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds