Wall clock time and date at job start Mon Mar 30 2020 03:40:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53004 * 109.46973 * 2 1
4 4 C 1.53003 * 109.47099 * 120.00159 * 2 1 3
5 5 H 1.09000 * 109.29783 * 179.43259 * 4 2 1
6 6 C 1.52925 * 109.13319 * 298.91049 * 4 2 1
7 7 C 1.53340 * 108.67328 * 170.96331 * 6 4 2
8 8 C 1.53072 * 108.42245 * 292.46693 * 7 6 4
9 9 C 1.50156 * 109.95079 * 48.69620 * 8 7 6
10 10 O 1.21283 * 118.23866 * 162.62566 * 9 8 7
11 11 N 1.33358 * 123.51941 * 342.89855 * 9 8 7
12 12 C 1.46501 * 117.95007 * 181.94653 * 11 9 8
13 13 C 1.50692 * 109.47141 * 264.41909 * 12 11 9
14 14 H 1.08003 * 120.00169 * 359.97438 * 13 12 11
15 15 C 1.37875 * 119.99965 * 180.02562 * 13 12 11
16 16 N 1.31522 * 119.99984 * 179.97438 * 15 13 12
17 17 Si 1.86801 * 119.99888 * 359.97438 * 15 13 12
18 18 H 1.48500 * 109.47008 * 90.00498 * 17 15 13
19 19 H 1.48505 * 109.47150 * 210.00068 * 17 15 13
20 20 H 1.48495 * 109.47188 * 330.00302 * 17 15 13
21 21 H 1.09004 * 109.47284 * 305.71771 * 1 2 3
22 22 H 1.09000 * 109.47507 * 65.72019 * 1 2 3
23 23 H 1.09001 * 109.47121 * 185.71928 * 1 2 3
24 24 H 1.08998 * 109.47182 * 239.99940 * 2 1 3
25 25 H 1.08996 * 109.47100 * 60.00494 * 3 2 1
26 26 H 1.09005 * 109.46809 * 180.02562 * 3 2 1
27 27 H 1.08996 * 109.46518 * 299.99549 * 3 2 1
28 28 H 1.08999 * 109.60261 * 290.72036 * 6 4 2
29 29 H 1.09002 * 109.59970 * 51.03824 * 6 4 2
30 30 H 1.08997 * 109.67720 * 52.20083 * 7 6 4
31 31 H 1.09003 * 109.67181 * 172.70509 * 7 6 4
32 32 H 1.09001 * 109.40095 * 169.03186 * 8 7 6
33 33 H 1.09004 * 109.40210 * 288.86112 * 8 7 6
34 34 H 1.09005 * 109.46740 * 24.41982 * 12 11 9
35 35 H 1.08994 * 109.47080 * 144.41233 * 12 11 9
36 36 H 0.96997 * 119.99931 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 3.1299 -0.7285 1.2413
6 6 1.5485 0.0213 2.4925
7 6 1.8686 -0.8267 3.7294
8 6 1.0052 -2.0900 3.6864
9 6 1.0976 -2.7278 2.3302
10 8 0.7472 -3.8831 2.2143
11 7 1.5491 -2.0937 1.2474
12 6 1.5461 -2.8200 -0.0249
13 6 2.9036 -3.4316 -0.2573
14 1 3.6901 -3.2929 0.4697
15 6 3.1418 -4.1675 -1.3987
16 7 4.3268 -4.7010 -1.6018
17 14 1.7817 -4.4070 -2.6565
18 1 1.8309 -3.3079 -3.6540
19 1 1.9682 -5.7093 -3.3454
20 1 0.4649 -4.3940 -1.9702
21 1 -0.3634 0.6000 0.8344
22 1 -0.3634 0.4226 -0.9367
23 1 -0.3633 -1.0226 0.1024
24 1 1.8933 -0.5138 -0.8900
25 1 1.6767 1.9563 0.8900
26 1 3.1300 1.4425 -0.0005
27 1 1.6766 1.9562 -0.8900
28 1 2.0550 0.9835 2.5678
29 1 0.4723 0.1790 2.4226
30 1 2.9230 -1.1025 3.7224
31 1 1.6437 -0.2585 4.6320
32 1 1.3531 -2.7923 4.4440
33 1 -0.0332 -1.8260 3.8870
34 1 0.7934 -3.6078 0.0082
35 1 1.3145 -2.1303 -0.8365
36 1 4.4943 -5.2190 -2.4045
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261020802.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:40:58
Heat of formation + Delta-G solvation = -47.767516 kcal
Electronic energy + Delta-G solvation = -16737.087703 eV
Core-core repulsion = 14220.758620 eV
Total energy + Delta-G solvation = -2516.329083 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.09239 -37.00329 -34.22255 -33.43449 -32.03885 -28.48480 -27.76447 -26.94499
-24.45284 -23.03880 -21.24706 -19.68391 -17.72917 -16.82116 -16.13762 -15.68505
-15.01713 -14.66273 -14.21461 -13.65504 -13.52469 -13.28272 -13.03851 -12.50427
-12.28263 -11.91817 -11.77777 -11.60383 -11.36842 -11.06256 -10.84919 -10.73874
-10.65851 -10.55758 -10.31831 -9.98289 -9.91122 -9.47954 -8.77945 -8.53635
-7.62639 -6.04656 -4.02035 3.28767 3.37482 3.43038 3.47059 3.91880
4.43627 4.87568 4.89627 4.96716 5.13966 5.29041 5.31777 5.39784
5.40430 5.67946 5.73400 5.80055 5.86141 5.94656 6.03012 6.07183
6.10017 6.11958 6.24114 6.33724 6.43882 6.59970 6.62126 6.85180
7.09994 7.38028 7.68650 8.42815 8.54955 8.98304 9.09193 9.56500
11.08939
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.025095 B = 0.011126 C = 0.009250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1115.495286 B = 2515.965331 C = 3026.405888
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.112 4.112
3 C -0.142 4.142
4 C 0.155 3.845
5 H 0.073 0.927
6 C -0.134 4.134
7 C -0.122 4.122
8 C -0.133 4.133
9 C 0.506 3.494
10 O -0.559 6.559
11 N -0.576 5.576
12 C 0.202 3.798
13 C -0.523 4.523
14 H 0.073 0.927
15 C 0.072 3.928
16 N -0.899 5.899
17 Si 0.871 3.129
18 H -0.275 1.275
19 H -0.284 1.284
20 H -0.263 1.263
21 H 0.052 0.948
22 H 0.050 0.950
23 H 0.059 0.941
24 H 0.090 0.910
25 H 0.054 0.946
26 H 0.056 0.944
27 H 0.053 0.947
28 H 0.078 0.922
29 H 0.072 0.928
30 H 0.070 0.930
31 H 0.068 0.932
32 H 0.092 0.908
33 H 0.088 0.912
34 H 0.044 0.956
35 H 0.030 0.970
36 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.410 13.413 6.416 16.191
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.131 4.131
3 C -0.200 4.200
4 C 0.050 3.950
5 H 0.091 0.909
6 C -0.172 4.172
7 C -0.160 4.160
8 C -0.173 4.173
9 C 0.293 3.707
10 O -0.439 6.439
11 N -0.306 5.306
12 C 0.081 3.919
13 C -0.562 4.562
14 H 0.091 0.909
15 C -0.130 4.130
16 N -0.538 5.538
17 Si 0.698 3.302
18 H -0.201 1.201
19 H -0.210 1.210
20 H -0.188 1.188
21 H 0.071 0.929
22 H 0.069 0.931
23 H 0.078 0.922
24 H 0.108 0.892
25 H 0.073 0.927
26 H 0.075 0.925
27 H 0.072 0.928
28 H 0.097 0.903
29 H 0.091 0.909
30 H 0.088 0.912
31 H 0.087 0.913
32 H 0.110 0.890
33 H 0.106 0.894
34 H 0.062 0.938
35 H 0.048 0.952
36 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -6.486 12.707 6.235 15.570
hybrid contribution -0.441 -0.214 -0.770 0.913
sum -6.927 12.494 5.465 15.295
Atomic orbital electron populations
1.21885 0.95418 1.02233 1.00872 1.21493 0.96072 0.96000 0.99515
1.21822 1.01198 0.95587 1.01400 1.20807 0.98582 0.81389 0.94188
0.90936 1.22059 1.02160 0.98846 0.94144 1.21636 1.00535 0.95704
0.98090 1.21625 1.01779 0.98109 0.95795 1.19854 0.78156 0.86705
0.85974 1.90683 1.50264 1.17352 1.85569 1.47238 1.60744 1.12615
1.10027 1.19810 0.98958 0.92400 0.80714 1.21300 0.96248 1.32228
1.06379 0.90907 1.24841 0.95333 0.94986 0.97839 1.69900 1.21456
1.35010 1.27466 0.86904 0.83434 0.78006 0.81823 1.20122 1.20983
1.18784 0.92932 0.93118 0.92162 0.89188 0.92709 0.92465 0.92799
0.90325 0.90943 0.91162 0.91295 0.88990 0.89368 0.93797 0.95191
0.92662
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.05 8.33 37.16 0.31 -1.74 16
2 C -0.11 -1.68 2.19 -90.62 -0.20 -1.88 16
3 C -0.14 -1.66 8.82 37.16 0.33 -1.33 16
4 C 0.15 2.54 2.56 -68.37 -0.17 2.37 16
5 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16
6 C -0.13 -1.65 4.49 -26.59 -0.12 -1.77 16
7 C -0.12 -1.50 6.04 -26.52 -0.16 -1.66 16
8 C -0.13 -2.00 6.03 -28.11 -0.17 -2.17 16
9 C 0.51 10.70 7.47 -11.88 -0.09 10.61 16
10 O -0.56 -14.54 16.13 5.56 0.09 -14.45 16
11 N -0.58 -12.05 2.03 -168.70 -0.34 -12.40 16
12 C 0.20 5.02 3.09 -5.20 -0.02 5.00 16
13 C -0.52 -15.24 9.91 -34.44 -0.34 -15.58 16
14 H 0.07 2.33 8.06 -52.48 -0.42 1.90 16
15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16
16 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16
17 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16
18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16
20 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16
21 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16
22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
23 H 0.06 0.99 6.62 -51.93 -0.34 0.64 16
24 H 0.09 1.60 6.37 -51.93 -0.33 1.27 16
25 H 0.05 0.54 6.60 -51.93 -0.34 0.20 16
26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
28 H 0.08 0.79 6.92 -51.93 -0.36 0.43 16
29 H 0.07 0.85 6.11 -51.93 -0.32 0.54 16
30 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16
31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16
34 H 0.04 1.21 6.08 -51.93 -0.32 0.89 16
35 H 0.03 0.70 4.58 -51.93 -0.24 0.46 16
36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16
LS Contribution 276.04 15.07 4.16 4.16
Total: -1.00 -33.83 276.04 -6.28 -40.11
By element:
Atomic # 1 Polarization: 4.31 SS G_CDS: -5.56 Total: -1.25 kcal
Atomic # 6 Polarization: -5.40 SS G_CDS: -0.73 Total: -6.12 kcal
Atomic # 7 Polarization: -40.14 SS G_CDS: 0.43 Total: -39.71 kcal
Atomic # 8 Polarization: -14.54 SS G_CDS: 0.09 Total: -14.45 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal
Total LS contribution 4.16 Total: 4.16 kcal
Total: -33.83 -6.28 -40.11 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261020802.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.661 kcal
(2) G-P(sol) polarization free energy of solvation -33.831 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.492 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.768 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds