Wall clock time and date at job start Mon Mar 30 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46973 * 2 1 4 4 C 1.53003 * 109.47099 * 120.00159 * 2 1 3 5 5 H 1.09000 * 109.29783 * 179.43259 * 4 2 1 6 6 C 1.52925 * 109.13319 * 298.91049 * 4 2 1 7 7 C 1.53340 * 108.67328 * 170.96331 * 6 4 2 8 8 C 1.53072 * 108.42245 * 292.46693 * 7 6 4 9 9 C 1.50156 * 109.95079 * 48.69620 * 8 7 6 10 10 O 1.21283 * 118.23866 * 162.62566 * 9 8 7 11 11 N 1.33358 * 123.51941 * 342.89855 * 9 8 7 12 12 C 1.46501 * 117.95007 * 181.94653 * 11 9 8 13 13 C 1.50692 * 109.47141 * 264.41909 * 12 11 9 14 14 H 1.08003 * 120.00169 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99965 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99984 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99888 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47008 * 90.00498 * 17 15 13 19 19 H 1.48505 * 109.47150 * 210.00068 * 17 15 13 20 20 H 1.48495 * 109.47188 * 330.00302 * 17 15 13 21 21 H 1.09004 * 109.47284 * 305.71771 * 1 2 3 22 22 H 1.09000 * 109.47507 * 65.72019 * 1 2 3 23 23 H 1.09001 * 109.47121 * 185.71928 * 1 2 3 24 24 H 1.08998 * 109.47182 * 239.99940 * 2 1 3 25 25 H 1.08996 * 109.47100 * 60.00494 * 3 2 1 26 26 H 1.09005 * 109.46809 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.46518 * 299.99549 * 3 2 1 28 28 H 1.08999 * 109.60261 * 290.72036 * 6 4 2 29 29 H 1.09002 * 109.59970 * 51.03824 * 6 4 2 30 30 H 1.08997 * 109.67720 * 52.20083 * 7 6 4 31 31 H 1.09003 * 109.67181 * 172.70509 * 7 6 4 32 32 H 1.09001 * 109.40095 * 169.03186 * 8 7 6 33 33 H 1.09004 * 109.40210 * 288.86112 * 8 7 6 34 34 H 1.09005 * 109.46740 * 24.41982 * 12 11 9 35 35 H 1.08994 * 109.47080 * 144.41233 * 12 11 9 36 36 H 0.96997 * 119.99931 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1299 -0.7285 1.2413 6 6 1.5485 0.0213 2.4925 7 6 1.8686 -0.8267 3.7294 8 6 1.0052 -2.0900 3.6864 9 6 1.0976 -2.7278 2.3302 10 8 0.7472 -3.8831 2.2143 11 7 1.5491 -2.0937 1.2474 12 6 1.5461 -2.8200 -0.0249 13 6 2.9036 -3.4316 -0.2573 14 1 3.6901 -3.2929 0.4697 15 6 3.1418 -4.1675 -1.3987 16 7 4.3268 -4.7010 -1.6018 17 14 1.7817 -4.4070 -2.6565 18 1 1.8309 -3.3079 -3.6540 19 1 1.9682 -5.7093 -3.3454 20 1 0.4649 -4.3940 -1.9702 21 1 -0.3634 0.6000 0.8344 22 1 -0.3634 0.4226 -0.9367 23 1 -0.3633 -1.0226 0.1024 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9562 -0.8900 28 1 2.0550 0.9835 2.5678 29 1 0.4723 0.1790 2.4226 30 1 2.9230 -1.1025 3.7224 31 1 1.6437 -0.2585 4.6320 32 1 1.3531 -2.7923 4.4440 33 1 -0.0332 -1.8260 3.8870 34 1 0.7934 -3.6078 0.0082 35 1 1.3145 -2.1303 -0.8365 36 1 4.4943 -5.2190 -2.4045 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261020802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:58 Heat of formation + Delta-G solvation = -47.767516 kcal Electronic energy + Delta-G solvation = -16737.087703 eV Core-core repulsion = 14220.758620 eV Total energy + Delta-G solvation = -2516.329083 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09239 -37.00329 -34.22255 -33.43449 -32.03885 -28.48480 -27.76447 -26.94499 -24.45284 -23.03880 -21.24706 -19.68391 -17.72917 -16.82116 -16.13762 -15.68505 -15.01713 -14.66273 -14.21461 -13.65504 -13.52469 -13.28272 -13.03851 -12.50427 -12.28263 -11.91817 -11.77777 -11.60383 -11.36842 -11.06256 -10.84919 -10.73874 -10.65851 -10.55758 -10.31831 -9.98289 -9.91122 -9.47954 -8.77945 -8.53635 -7.62639 -6.04656 -4.02035 3.28767 3.37482 3.43038 3.47059 3.91880 4.43627 4.87568 4.89627 4.96716 5.13966 5.29041 5.31777 5.39784 5.40430 5.67946 5.73400 5.80055 5.86141 5.94656 6.03012 6.07183 6.10017 6.11958 6.24114 6.33724 6.43882 6.59970 6.62126 6.85180 7.09994 7.38028 7.68650 8.42815 8.54955 8.98304 9.09193 9.56500 11.08939 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.011126 C = 0.009250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.495286 B = 2515.965331 C = 3026.405888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.142 4.142 4 C 0.155 3.845 5 H 0.073 0.927 6 C -0.134 4.134 7 C -0.122 4.122 8 C -0.133 4.133 9 C 0.506 3.494 10 O -0.559 6.559 11 N -0.576 5.576 12 C 0.202 3.798 13 C -0.523 4.523 14 H 0.073 0.927 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.871 3.129 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.263 1.263 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 13.413 6.416 16.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.200 4.200 4 C 0.050 3.950 5 H 0.091 0.909 6 C -0.172 4.172 7 C -0.160 4.160 8 C -0.173 4.173 9 C 0.293 3.707 10 O -0.439 6.439 11 N -0.306 5.306 12 C 0.081 3.919 13 C -0.562 4.562 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.698 3.302 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.188 1.188 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.486 12.707 6.235 15.570 hybrid contribution -0.441 -0.214 -0.770 0.913 sum -6.927 12.494 5.465 15.295 Atomic orbital electron populations 1.21885 0.95418 1.02233 1.00872 1.21493 0.96072 0.96000 0.99515 1.21822 1.01198 0.95587 1.01400 1.20807 0.98582 0.81389 0.94188 0.90936 1.22059 1.02160 0.98846 0.94144 1.21636 1.00535 0.95704 0.98090 1.21625 1.01779 0.98109 0.95795 1.19854 0.78156 0.86705 0.85974 1.90683 1.50264 1.17352 1.85569 1.47238 1.60744 1.12615 1.10027 1.19810 0.98958 0.92400 0.80714 1.21300 0.96248 1.32228 1.06379 0.90907 1.24841 0.95333 0.94986 0.97839 1.69900 1.21456 1.35010 1.27466 0.86904 0.83434 0.78006 0.81823 1.20122 1.20983 1.18784 0.92932 0.93118 0.92162 0.89188 0.92709 0.92465 0.92799 0.90325 0.90943 0.91162 0.91295 0.88990 0.89368 0.93797 0.95191 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.33 37.16 0.31 -1.74 16 2 C -0.11 -1.68 2.19 -90.62 -0.20 -1.88 16 3 C -0.14 -1.66 8.82 37.16 0.33 -1.33 16 4 C 0.15 2.54 2.56 -68.37 -0.17 2.37 16 5 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 6 C -0.13 -1.65 4.49 -26.59 -0.12 -1.77 16 7 C -0.12 -1.50 6.04 -26.52 -0.16 -1.66 16 8 C -0.13 -2.00 6.03 -28.11 -0.17 -2.17 16 9 C 0.51 10.70 7.47 -11.88 -0.09 10.61 16 10 O -0.56 -14.54 16.13 5.56 0.09 -14.45 16 11 N -0.58 -12.05 2.03 -168.70 -0.34 -12.40 16 12 C 0.20 5.02 3.09 -5.20 -0.02 5.00 16 13 C -0.52 -15.24 9.91 -34.44 -0.34 -15.58 16 14 H 0.07 2.33 8.06 -52.48 -0.42 1.90 16 15 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 17 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 21 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.99 6.62 -51.93 -0.34 0.64 16 24 H 0.09 1.60 6.37 -51.93 -0.33 1.27 16 25 H 0.05 0.54 6.60 -51.93 -0.34 0.20 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.79 6.92 -51.93 -0.36 0.43 16 29 H 0.07 0.85 6.11 -51.93 -0.32 0.54 16 30 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.04 1.21 6.08 -51.93 -0.32 0.89 16 35 H 0.03 0.70 4.58 -51.93 -0.24 0.46 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 276.04 15.07 4.16 4.16 Total: -1.00 -33.83 276.04 -6.28 -40.11 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.56 Total: -1.25 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.73 Total: -6.12 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.43 Total: -39.71 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.09 Total: -14.45 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.83 -6.28 -40.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.661 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds