Wall clock time and date at job start Mon Mar 30 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46973 * 2 1 4 4 C 1.53003 * 109.47099 * 120.00159 * 2 1 3 5 5 H 1.09000 * 109.29783 * 179.43259 * 4 2 1 6 6 C 1.52925 * 109.13319 * 298.91049 * 4 2 1 7 7 C 1.53340 * 108.67328 * 170.96331 * 6 4 2 8 8 C 1.53072 * 108.42245 * 292.46693 * 7 6 4 9 9 C 1.50156 * 109.95079 * 48.69620 * 8 7 6 10 10 O 1.21283 * 118.23866 * 162.62566 * 9 8 7 11 11 N 1.33358 * 123.51941 * 342.89855 * 9 8 7 12 12 C 1.46501 * 117.95007 * 181.94653 * 11 9 8 13 13 C 1.50692 * 109.47141 * 264.41909 * 12 11 9 14 14 H 1.08003 * 120.00169 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99965 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99984 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99888 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47008 * 90.00498 * 17 15 13 19 19 H 1.48505 * 109.47150 * 210.00068 * 17 15 13 20 20 H 1.48495 * 109.47188 * 330.00302 * 17 15 13 21 21 H 1.09004 * 109.47284 * 305.71771 * 1 2 3 22 22 H 1.09000 * 109.47507 * 65.72019 * 1 2 3 23 23 H 1.09001 * 109.47121 * 185.71928 * 1 2 3 24 24 H 1.08998 * 109.47182 * 239.99940 * 2 1 3 25 25 H 1.08996 * 109.47100 * 60.00494 * 3 2 1 26 26 H 1.09005 * 109.46809 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.46518 * 299.99549 * 3 2 1 28 28 H 1.08999 * 109.60261 * 290.72036 * 6 4 2 29 29 H 1.09002 * 109.59970 * 51.03824 * 6 4 2 30 30 H 1.08997 * 109.67720 * 52.20083 * 7 6 4 31 31 H 1.09003 * 109.67181 * 172.70509 * 7 6 4 32 32 H 1.09001 * 109.40095 * 169.03186 * 8 7 6 33 33 H 1.09004 * 109.40210 * 288.86112 * 8 7 6 34 34 H 1.09005 * 109.46740 * 24.41982 * 12 11 9 35 35 H 1.08994 * 109.47080 * 144.41233 * 12 11 9 36 36 H 0.96997 * 119.99931 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1299 -0.7285 1.2413 6 6 1.5485 0.0213 2.4925 7 6 1.8686 -0.8267 3.7294 8 6 1.0052 -2.0900 3.6864 9 6 1.0976 -2.7278 2.3302 10 8 0.7472 -3.8831 2.2143 11 7 1.5491 -2.0937 1.2474 12 6 1.5461 -2.8200 -0.0249 13 6 2.9036 -3.4316 -0.2573 14 1 3.6901 -3.2929 0.4697 15 6 3.1418 -4.1675 -1.3987 16 7 4.3268 -4.7010 -1.6018 17 14 1.7817 -4.4070 -2.6565 18 1 1.8309 -3.3079 -3.6540 19 1 1.9682 -5.7093 -3.3454 20 1 0.4649 -4.3940 -1.9702 21 1 -0.3634 0.6000 0.8344 22 1 -0.3634 0.4226 -0.9367 23 1 -0.3633 -1.0226 0.1024 24 1 1.8933 -0.5138 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9562 -0.8900 28 1 2.0550 0.9835 2.5678 29 1 0.4723 0.1790 2.4226 30 1 2.9230 -1.1025 3.7224 31 1 1.6437 -0.2585 4.6320 32 1 1.3531 -2.7923 4.4440 33 1 -0.0332 -1.8260 3.8870 34 1 0.7934 -3.6078 0.0082 35 1 1.3145 -2.1303 -0.8365 36 1 4.4943 -5.2190 -2.4045 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261020802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:58 Heat of formation + Delta-G solvation = -70.736597 kcal Electronic energy + Delta-G solvation = -16738.083717 eV Core-core repulsion = 14220.758620 eV Total energy + Delta-G solvation = -2517.325097 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60288 -38.51651 -35.74032 -34.99092 -34.05022 -29.98592 -29.51590 -27.96247 -25.76323 -24.79697 -22.74812 -20.98932 -19.37520 -18.83521 -17.59155 -17.39887 -16.50877 -16.18429 -15.87272 -14.97954 -14.83519 -14.79246 -14.57666 -14.07995 -13.64148 -13.51968 -13.08819 -12.85578 -12.81651 -12.66435 -12.44641 -12.09870 -12.01872 -11.83068 -11.77339 -11.60812 -11.55154 -11.21028 -10.81812 -10.40798 -9.40293 -8.37154 -6.40888 1.25907 1.31028 1.42386 1.82419 2.27632 2.36322 2.96892 3.71329 3.78292 3.81306 4.00978 4.22285 4.23698 4.31609 4.59469 4.64419 4.67014 4.83018 4.87605 4.89293 4.98788 5.02743 5.06287 5.11744 5.12357 5.13724 5.30925 5.39219 5.41271 5.52986 5.55522 5.65282 6.20801 6.59087 6.84081 7.19844 7.44922 8.80110 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025095 B = 0.011126 C = 0.009250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.495286 B = 2515.965331 C = 3026.405888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.134 4.134 4 C 0.143 3.857 5 H 0.048 0.952 6 C -0.125 4.125 7 C -0.117 4.117 8 C -0.124 4.124 9 C 0.490 3.510 10 O -0.622 6.622 11 N -0.578 5.578 12 C 0.215 3.785 13 C -0.533 4.533 14 H 0.025 0.975 15 C 0.013 3.987 16 N -0.945 5.945 17 Si 0.942 3.058 18 H -0.248 1.248 19 H -0.278 1.278 20 H -0.260 1.260 21 H 0.082 0.918 22 H 0.063 0.937 23 H 0.028 0.972 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.016 0.984 35 H 0.050 0.950 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 16.428 7.044 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.192 4.192 4 C 0.041 3.959 5 H 0.066 0.934 6 C -0.162 4.162 7 C -0.154 4.154 8 C -0.163 4.163 9 C 0.280 3.720 10 O -0.506 6.506 11 N -0.307 5.307 12 C 0.092 3.908 13 C -0.571 4.571 14 H 0.044 0.956 15 C -0.185 4.185 16 N -0.585 5.585 17 Si 0.765 3.235 18 H -0.173 1.173 19 H -0.204 1.204 20 H -0.184 1.184 21 H 0.100 0.900 22 H 0.082 0.918 23 H 0.048 0.952 24 H 0.069 0.931 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.114 0.886 33 H 0.136 0.864 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.286 15.785 6.878 19.108 hybrid contribution 0.225 -1.171 -0.917 1.505 sum -8.061 14.613 5.961 17.722 Atomic orbital electron populations 1.21854 0.94172 1.00964 1.02927 1.21472 0.97076 0.97721 0.96886 1.21778 1.00907 0.93075 1.03438 1.21167 0.97400 0.79589 0.97790 0.93351 1.22092 1.03375 0.99434 0.91311 1.21677 0.99006 0.94621 1.00106 1.21665 1.04376 0.99166 0.91108 1.21160 0.76623 0.86225 0.88035 1.90640 1.52951 1.20241 1.86733 1.47371 1.60333 1.14309 1.08695 1.19396 0.95284 0.92344 0.83733 1.21513 0.97137 1.32944 1.05526 0.95638 1.25810 0.98065 0.94401 1.00247 1.70049 1.23821 1.36026 1.28587 0.85784 0.79695 0.78904 0.79119 1.17251 1.20372 1.18438 0.89953 0.91795 0.95249 0.93146 0.89793 0.92963 0.91627 0.86829 0.89298 0.92656 0.86712 0.88633 0.86362 0.96631 0.93200 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.33 71.98 0.60 -3.00 16 2 C -0.11 -3.22 2.19 -10.79 -0.02 -3.24 16 3 C -0.13 -2.69 8.82 71.98 0.63 -2.06 16 4 C 0.14 4.60 2.56 45.11 0.12 4.72 16 5 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 6 C -0.12 -2.57 4.49 30.68 0.14 -2.43 16 7 C -0.12 -2.44 6.04 30.73 0.19 -2.25 16 8 C -0.12 -3.45 6.03 29.70 0.18 -3.27 16 9 C 0.49 21.05 7.47 87.71 0.66 21.70 16 10 O -0.62 -33.74 16.13 -3.04 -0.05 -33.79 16 11 N -0.58 -24.77 2.03 -806.84 -1.64 -26.40 16 12 C 0.22 11.11 3.09 85.63 0.26 11.37 16 13 C -0.53 -32.81 9.91 25.60 0.25 -32.55 16 14 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 15 C 0.01 0.78 5.47 84.65 0.46 1.24 16 16 N -0.94 -61.29 13.96 21.45 0.30 -60.99 16 17 Si 0.94 46.25 27.47 68.60 1.88 48.13 16 18 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16 19 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.26 -12.55 6.54 99.48 0.65 -11.90 16 21 H 0.08 1.59 6.54 -2.38 -0.02 1.57 16 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.03 0.91 6.62 -2.39 -0.02 0.90 16 24 H 0.05 1.81 6.37 -2.39 -0.02 1.80 16 25 H 0.08 1.21 6.60 -2.39 -0.02 1.20 16 26 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 28 H 0.11 1.63 6.92 -2.39 -0.02 1.62 16 29 H 0.09 1.61 6.11 -2.39 -0.01 1.59 16 30 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.02 0.89 6.08 -2.38 -0.01 0.88 16 35 H 0.05 2.38 4.58 -2.39 -0.01 2.37 16 36 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 Total: -1.00 -80.27 276.04 4.96 -75.31 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.00 Total: 7.52 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 3.46 Total: -9.78 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -1.34 Total: -87.39 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.05 Total: -33.79 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.88 Total: 48.13 kcal Total: -80.27 4.96 -75.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261020802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.573 kcal (2) G-P(sol) polarization free energy of solvation -80.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds