Wall clock time and date at job start Mon Mar 30 2020 03:40:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53004 * 109.46973 * 2 1
4 4 C 1.53003 * 109.47099 * 120.00159 * 2 1 3
5 5 H 1.09000 * 109.29783 * 179.43259 * 4 2 1
6 6 C 1.52925 * 109.13319 * 298.91049 * 4 2 1
7 7 C 1.53340 * 108.67328 * 170.96331 * 6 4 2
8 8 C 1.53072 * 108.42245 * 292.46693 * 7 6 4
9 9 C 1.50156 * 109.95079 * 48.69620 * 8 7 6
10 10 O 1.21283 * 118.23866 * 162.62566 * 9 8 7
11 11 N 1.33358 * 123.51941 * 342.89855 * 9 8 7
12 12 C 1.46501 * 117.95007 * 181.94653 * 11 9 8
13 13 C 1.50692 * 109.47141 * 264.41909 * 12 11 9
14 14 H 1.08003 * 120.00169 * 359.97438 * 13 12 11
15 15 C 1.37875 * 119.99965 * 180.02562 * 13 12 11
16 16 N 1.31522 * 119.99984 * 179.97438 * 15 13 12
17 17 Si 1.86801 * 119.99888 * 359.97438 * 15 13 12
18 18 H 1.48500 * 109.47008 * 90.00498 * 17 15 13
19 19 H 1.48505 * 109.47150 * 210.00068 * 17 15 13
20 20 H 1.48495 * 109.47188 * 330.00302 * 17 15 13
21 21 H 1.09004 * 109.47284 * 305.71771 * 1 2 3
22 22 H 1.09000 * 109.47507 * 65.72019 * 1 2 3
23 23 H 1.09001 * 109.47121 * 185.71928 * 1 2 3
24 24 H 1.08998 * 109.47182 * 239.99940 * 2 1 3
25 25 H 1.08996 * 109.47100 * 60.00494 * 3 2 1
26 26 H 1.09005 * 109.46809 * 180.02562 * 3 2 1
27 27 H 1.08996 * 109.46518 * 299.99549 * 3 2 1
28 28 H 1.08999 * 109.60261 * 290.72036 * 6 4 2
29 29 H 1.09002 * 109.59970 * 51.03824 * 6 4 2
30 30 H 1.08997 * 109.67720 * 52.20083 * 7 6 4
31 31 H 1.09003 * 109.67181 * 172.70509 * 7 6 4
32 32 H 1.09001 * 109.40095 * 169.03186 * 8 7 6
33 33 H 1.09004 * 109.40210 * 288.86112 * 8 7 6
34 34 H 1.09005 * 109.46740 * 24.41982 * 12 11 9
35 35 H 1.08994 * 109.47080 * 144.41233 * 12 11 9
36 36 H 0.96997 * 119.99931 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 3.1299 -0.7285 1.2413
6 6 1.5485 0.0213 2.4925
7 6 1.8686 -0.8267 3.7294
8 6 1.0052 -2.0900 3.6864
9 6 1.0976 -2.7278 2.3302
10 8 0.7472 -3.8831 2.2143
11 7 1.5491 -2.0937 1.2474
12 6 1.5461 -2.8200 -0.0249
13 6 2.9036 -3.4316 -0.2573
14 1 3.6901 -3.2929 0.4697
15 6 3.1418 -4.1675 -1.3987
16 7 4.3268 -4.7010 -1.6018
17 14 1.7817 -4.4070 -2.6565
18 1 1.8309 -3.3079 -3.6540
19 1 1.9682 -5.7093 -3.3454
20 1 0.4649 -4.3940 -1.9702
21 1 -0.3634 0.6000 0.8344
22 1 -0.3634 0.4226 -0.9367
23 1 -0.3633 -1.0226 0.1024
24 1 1.8933 -0.5138 -0.8900
25 1 1.6767 1.9563 0.8900
26 1 3.1300 1.4425 -0.0005
27 1 1.6766 1.9562 -0.8900
28 1 2.0550 0.9835 2.5678
29 1 0.4723 0.1790 2.4226
30 1 2.9230 -1.1025 3.7224
31 1 1.6437 -0.2585 4.6320
32 1 1.3531 -2.7923 4.4440
33 1 -0.0332 -1.8260 3.8870
34 1 0.7934 -3.6078 0.0082
35 1 1.3145 -2.1303 -0.8365
36 1 4.4943 -5.2190 -2.4045
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261020802.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:40:58
Heat of formation + Delta-G solvation = -70.736597 kcal
Electronic energy + Delta-G solvation = -16738.083717 eV
Core-core repulsion = 14220.758620 eV
Total energy + Delta-G solvation = -2517.325097 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.60288 -38.51651 -35.74032 -34.99092 -34.05022 -29.98592 -29.51590 -27.96247
-25.76323 -24.79697 -22.74812 -20.98932 -19.37520 -18.83521 -17.59155 -17.39887
-16.50877 -16.18429 -15.87272 -14.97954 -14.83519 -14.79246 -14.57666 -14.07995
-13.64148 -13.51968 -13.08819 -12.85578 -12.81651 -12.66435 -12.44641 -12.09870
-12.01872 -11.83068 -11.77339 -11.60812 -11.55154 -11.21028 -10.81812 -10.40798
-9.40293 -8.37154 -6.40888 1.25907 1.31028 1.42386 1.82419 2.27632
2.36322 2.96892 3.71329 3.78292 3.81306 4.00978 4.22285 4.23698
4.31609 4.59469 4.64419 4.67014 4.83018 4.87605 4.89293 4.98788
5.02743 5.06287 5.11744 5.12357 5.13724 5.30925 5.39219 5.41271
5.52986 5.55522 5.65282 6.20801 6.59087 6.84081 7.19844 7.44922
8.80110
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.025095 B = 0.011126 C = 0.009250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1115.495286 B = 2515.965331 C = 3026.405888
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.112 4.112
3 C -0.134 4.134
4 C 0.143 3.857
5 H 0.048 0.952
6 C -0.125 4.125
7 C -0.117 4.117
8 C -0.124 4.124
9 C 0.490 3.510
10 O -0.622 6.622
11 N -0.578 5.578
12 C 0.215 3.785
13 C -0.533 4.533
14 H 0.025 0.975
15 C 0.013 3.987
16 N -0.945 5.945
17 Si 0.942 3.058
18 H -0.248 1.248
19 H -0.278 1.278
20 H -0.260 1.260
21 H 0.082 0.918
22 H 0.063 0.937
23 H 0.028 0.972
24 H 0.050 0.950
25 H 0.083 0.917
26 H 0.051 0.949
27 H 0.065 0.935
28 H 0.113 0.887
29 H 0.089 0.911
30 H 0.055 0.945
31 H 0.115 0.885
32 H 0.095 0.905
33 H 0.118 0.882
34 H 0.016 0.984
35 H 0.050 0.950
36 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.227 16.428 7.044 19.677
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.132 4.132
3 C -0.192 4.192
4 C 0.041 3.959
5 H 0.066 0.934
6 C -0.162 4.162
7 C -0.154 4.154
8 C -0.163 4.163
9 C 0.280 3.720
10 O -0.506 6.506
11 N -0.307 5.307
12 C 0.092 3.908
13 C -0.571 4.571
14 H 0.044 0.956
15 C -0.185 4.185
16 N -0.585 5.585
17 Si 0.765 3.235
18 H -0.173 1.173
19 H -0.204 1.204
20 H -0.184 1.184
21 H 0.100 0.900
22 H 0.082 0.918
23 H 0.048 0.952
24 H 0.069 0.931
25 H 0.102 0.898
26 H 0.070 0.930
27 H 0.084 0.916
28 H 0.132 0.868
29 H 0.107 0.893
30 H 0.073 0.927
31 H 0.133 0.867
32 H 0.114 0.886
33 H 0.136 0.864
34 H 0.034 0.966
35 H 0.068 0.932
36 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -8.286 15.785 6.878 19.108
hybrid contribution 0.225 -1.171 -0.917 1.505
sum -8.061 14.613 5.961 17.722
Atomic orbital electron populations
1.21854 0.94172 1.00964 1.02927 1.21472 0.97076 0.97721 0.96886
1.21778 1.00907 0.93075 1.03438 1.21167 0.97400 0.79589 0.97790
0.93351 1.22092 1.03375 0.99434 0.91311 1.21677 0.99006 0.94621
1.00106 1.21665 1.04376 0.99166 0.91108 1.21160 0.76623 0.86225
0.88035 1.90640 1.52951 1.20241 1.86733 1.47371 1.60333 1.14309
1.08695 1.19396 0.95284 0.92344 0.83733 1.21513 0.97137 1.32944
1.05526 0.95638 1.25810 0.98065 0.94401 1.00247 1.70049 1.23821
1.36026 1.28587 0.85784 0.79695 0.78904 0.79119 1.17251 1.20372
1.18438 0.89953 0.91795 0.95249 0.93146 0.89793 0.92963 0.91627
0.86829 0.89298 0.92656 0.86712 0.88633 0.86362 0.96631 0.93200
0.92252
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.60 8.33 71.98 0.60 -3.00 16
2 C -0.11 -3.22 2.19 -10.79 -0.02 -3.24 16
3 C -0.13 -2.69 8.82 71.98 0.63 -2.06 16
4 C 0.14 4.60 2.56 45.11 0.12 4.72 16
5 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16
6 C -0.12 -2.57 4.49 30.68 0.14 -2.43 16
7 C -0.12 -2.44 6.04 30.73 0.19 -2.25 16
8 C -0.12 -3.45 6.03 29.70 0.18 -3.27 16
9 C 0.49 21.05 7.47 87.71 0.66 21.70 16
10 O -0.62 -33.74 16.13 -3.04 -0.05 -33.79 16
11 N -0.58 -24.77 2.03 -806.84 -1.64 -26.40 16
12 C 0.22 11.11 3.09 85.63 0.26 11.37 16
13 C -0.53 -32.81 9.91 25.60 0.25 -32.55 16
14 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16
15 C 0.01 0.78 5.47 84.65 0.46 1.24 16
16 N -0.94 -61.29 13.96 21.45 0.30 -60.99 16
17 Si 0.94 46.25 27.47 68.60 1.88 48.13 16
18 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16
19 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16
20 H -0.26 -12.55 6.54 99.48 0.65 -11.90 16
21 H 0.08 1.59 6.54 -2.38 -0.02 1.57 16
22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16
23 H 0.03 0.91 6.62 -2.39 -0.02 0.90 16
24 H 0.05 1.81 6.37 -2.39 -0.02 1.80 16
25 H 0.08 1.21 6.60 -2.39 -0.02 1.20 16
26 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16
27 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16
28 H 0.11 1.63 6.92 -2.39 -0.02 1.62 16
29 H 0.09 1.61 6.11 -2.39 -0.01 1.59 16
30 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16
31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16
32 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16
33 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16
34 H 0.02 0.89 6.08 -2.38 -0.01 0.88 16
35 H 0.05 2.38 4.58 -2.39 -0.01 2.37 16
36 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16
Total: -1.00 -80.27 276.04 4.96 -75.31
By element:
Atomic # 1 Polarization: 6.52 SS G_CDS: 1.00 Total: 7.52 kcal
Atomic # 6 Polarization: -13.24 SS G_CDS: 3.46 Total: -9.78 kcal
Atomic # 7 Polarization: -86.05 SS G_CDS: -1.34 Total: -87.39 kcal
Atomic # 8 Polarization: -33.74 SS G_CDS: -0.05 Total: -33.79 kcal
Atomic # 14 Polarization: 46.25 SS G_CDS: 1.88 Total: 48.13 kcal
Total: -80.27 4.96 -75.31 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261020802.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.573 kcal
(2) G-P(sol) polarization free energy of solvation -80.269 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.696 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.310 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds