Wall clock time and date at job start Mon Mar 30 2020 02:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 113.56770 * 2 1 4 4 N 1.46894 * 109.47242 * 68.70484 * 3 2 1 5 5 C 1.47475 * 110.99927 * 79.81170 * 4 3 2 6 6 C 1.53515 * 87.93346 * 138.70492 * 5 4 3 7 7 C 1.52995 * 114.17155 * 220.33033 * 6 5 4 8 8 C 1.50700 * 109.47163 * 268.83678 * 7 6 5 9 9 H 1.08001 * 120.00256 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00284 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99812 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00230 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47148 * 89.99584 * 12 10 8 14 14 H 1.48500 * 109.47217 * 209.99831 * 12 10 8 15 15 H 1.48501 * 109.46989 * 329.99665 * 12 10 8 16 16 C 1.47483 * 110.99948 * 175.78347 * 4 3 2 17 17 C 1.53369 * 114.56630 * 134.27708 * 2 1 3 18 18 O 1.43350 * 88.44838 * 86.60477 * 17 2 1 19 19 C 1.43351 * 88.31913 * 28.15181 * 18 17 2 20 20 H 1.09002 * 109.47576 * 291.11155 * 1 2 3 21 21 H 1.08998 * 109.47406 * 51.11169 * 1 2 3 22 22 H 1.09000 * 109.47242 * 171.10497 * 1 2 3 23 23 H 1.09002 * 109.47145 * 188.70806 * 3 2 1 24 24 H 1.09006 * 109.47164 * 308.70103 * 3 2 1 25 25 H 1.09000 * 113.47915 * 253.46897 * 5 4 3 26 26 H 1.08996 * 113.47785 * 23.93985 * 5 4 3 27 27 H 1.09004 * 114.17369 * 87.62035 * 6 5 4 28 28 H 1.08993 * 109.47325 * 28.83870 * 7 6 5 29 29 H 1.09003 * 109.47444 * 148.83794 * 7 6 5 30 30 H 0.97001 * 119.99968 * 179.97438 * 11 10 8 31 31 H 1.08991 * 113.47635 * 336.06309 * 16 4 3 32 32 H 1.09003 * 113.47350 * 106.46896 * 16 4 3 33 33 H 1.08999 * 113.38894 * 331.70231 * 17 2 1 34 34 H 1.08997 * 113.43528 * 201.51419 * 17 2 1 35 35 H 1.09002 * 113.39114 * 86.74603 * 19 18 17 36 36 H 1.09000 * 113.39101 * 216.94789 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1417 1.4024 0.0000 4 7 1.8764 2.0523 1.2904 5 6 2.8195 1.5827 2.3224 6 6 2.9174 3.0336 2.8141 7 6 4.3307 3.4677 3.2075 8 6 4.5480 3.2013 4.6747 9 1 3.7572 2.7655 5.2674 10 6 5.7562 3.5139 5.2607 11 7 6.7194 4.0441 4.5390 12 14 6.0257 3.1829 7.0793 13 1 6.5756 1.8150 7.2573 14 1 6.9838 4.1767 7.6266 15 1 4.7319 3.2940 7.7997 16 6 2.5375 3.3686 1.3649 17 6 2.1675 -0.9738 0.9987 18 8 2.0742 -1.9979 0.0000 19 6 2.1675 -0.9738 -0.9986 20 1 -0.3634 0.3701 0.9587 21 1 -0.3634 0.6451 -0.7999 22 1 -0.3634 -1.0153 -0.1589 23 1 3.2180 1.3293 -0.1556 24 1 1.6980 1.9924 -0.8020 25 1 2.3673 0.9076 3.0489 26 1 3.7542 1.1986 1.9140 27 1 2.1603 3.3080 3.5488 28 1 5.0593 2.9048 2.6242 29 1 4.4520 4.5328 3.0098 30 1 7.5693 4.2644 4.9514 31 1 3.3969 3.4611 0.7010 32 1 1.8463 4.2071 1.2789 33 1 1.5463 -1.1646 1.8737 34 1 3.1939 -0.7164 1.2601 35 1 3.1940 -0.7158 -1.2594 36 1 1.5463 -1.1648 -1.8737 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261028571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:50 Heat of formation + Delta-G solvation = 13.974957 kcal Electronic energy + Delta-G solvation = -15863.858037 eV Core-core repulsion = 13350.206309 eV Total energy + Delta-G solvation = -2513.651729 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.21564 -39.27458 -33.69934 -32.69625 -30.08977 -27.37378 -26.54888 -26.31643 -25.08038 -23.76789 -21.31808 -19.23616 -18.43253 -16.37590 -16.14641 -16.08353 -15.91343 -14.96571 -14.69994 -14.20317 -13.98864 -13.39806 -12.95072 -12.31850 -12.28468 -12.04181 -11.89506 -11.74401 -11.41088 -11.19912 -10.89103 -10.58959 -10.42928 -10.32158 -10.12025 -9.72412 -9.61243 -9.36807 -9.04859 -8.46142 -8.33020 -6.01967 -4.04058 3.31272 3.37842 3.41235 3.91466 3.97433 4.44652 4.52147 4.81635 4.91761 5.15617 5.27761 5.31339 5.36648 5.41327 5.49216 5.58529 5.62848 5.80199 5.82143 5.89055 5.94118 6.02526 6.06631 6.13147 6.16405 6.27272 6.35071 6.63439 6.80025 6.98121 7.46287 7.63967 7.74179 7.96488 8.40019 9.02336 9.60245 11.09240 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040125 B = 0.005797 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.648309 B = 4829.049867 C = 5107.817532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C 0.031 3.969 4 N -0.473 5.473 5 C 0.006 3.994 6 C -0.096 4.096 7 C 0.031 3.969 8 C -0.516 4.516 9 H 0.056 0.944 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.273 1.273 16 C -0.004 4.004 17 C 0.037 3.963 18 O -0.373 6.373 19 C 0.035 3.965 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.016 0.984 29 H 0.020 0.980 30 H 0.260 0.740 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.293 -6.217 -9.904 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.120 4.120 3 C -0.098 4.098 4 N -0.195 5.195 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.007 4.007 8 C -0.555 4.555 9 H 0.074 0.926 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.198 1.198 16 C -0.133 4.133 17 C -0.040 4.040 18 O -0.292 6.292 19 C -0.043 4.043 20 H 0.090 0.910 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.881 -6.534 -9.837 15.398 hybrid contribution 1.273 0.000 0.705 1.455 sum -8.609 -6.533 -9.132 14.149 Atomic orbital electron populations 1.21350 0.91406 1.01354 1.02952 1.23099 0.97708 0.94685 0.96514 1.22567 0.98312 0.94127 0.94780 1.68861 1.42508 1.04041 1.04124 1.23940 0.94291 0.99273 0.94731 1.22835 1.01304 0.93730 0.93653 1.19070 0.88501 0.96689 0.96414 1.21224 0.98751 1.40926 0.94556 0.92585 1.25022 0.96198 0.95251 0.97991 1.69960 1.04546 1.43275 1.35862 0.86609 0.78050 0.77970 0.85482 1.20702 1.21267 1.19832 1.23946 0.97195 0.92866 0.99307 1.23865 1.01039 0.85605 0.93442 1.89824 1.94510 1.26224 1.18611 1.23783 1.00471 0.86539 0.93489 0.91032 0.92335 0.92578 0.93807 0.90735 0.90698 0.91728 0.89347 0.96576 0.96156 0.93015 0.91867 0.90743 0.89499 0.90009 0.90464 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.21 37.15 0.34 -0.93 16 2 C -0.12 -1.44 1.28 -154.13 -0.20 -1.64 16 3 C 0.03 0.41 4.39 -3.83 -0.02 0.39 16 4 N -0.47 -7.33 6.30 -244.63 -1.54 -8.87 16 5 C 0.01 0.11 5.30 -7.55 -0.04 0.07 16 6 C -0.10 -1.91 3.93 -90.09 -0.35 -2.27 16 7 C 0.03 0.76 4.88 -27.89 -0.14 0.62 16 8 C -0.52 -14.23 9.09 -34.44 -0.31 -14.55 16 9 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 12 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 16 C 0.00 -0.07 7.30 -7.54 -0.06 -0.13 16 17 C 0.04 0.50 6.47 24.59 0.16 0.66 16 18 O -0.37 -5.31 12.57 -35.23 -0.44 -5.75 16 19 C 0.03 0.40 7.89 24.59 0.19 0.59 16 20 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.60 7.97 -51.93 -0.41 0.19 16 23 H 0.04 0.59 7.39 -51.93 -0.38 0.21 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 26 H 0.06 1.15 6.63 -51.93 -0.34 0.81 16 27 H 0.09 1.80 8.12 -51.93 -0.42 1.38 16 28 H 0.02 0.42 7.81 -51.93 -0.41 0.02 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.06 1.05 7.82 -51.93 -0.41 0.64 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 1.14 8.13 -51.93 -0.42 0.72 16 34 H 0.08 1.13 6.79 -51.93 -0.35 0.77 16 35 H 0.08 0.82 7.99 -51.93 -0.42 0.40 16 36 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 LS Contribution 289.78 15.07 4.37 4.37 Total: -1.00 -29.28 289.78 -8.48 -37.76 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.06 Total: -2.40 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -0.51 Total: -15.69 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: -0.81 Total: -34.72 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.44 Total: -5.75 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.28 -8.48 -37.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.734 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds