Wall clock time and date at job start Mon Mar 30 2020 02:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 113.56770 * 2 1 4 4 N 1.46894 * 109.47242 * 68.70484 * 3 2 1 5 5 C 1.47475 * 110.99927 * 79.81170 * 4 3 2 6 6 C 1.53515 * 87.93346 * 138.70492 * 5 4 3 7 7 C 1.52995 * 114.17155 * 220.33033 * 6 5 4 8 8 C 1.50700 * 109.47163 * 268.83678 * 7 6 5 9 9 H 1.08001 * 120.00256 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00284 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99812 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00230 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47148 * 89.99584 * 12 10 8 14 14 H 1.48500 * 109.47217 * 209.99831 * 12 10 8 15 15 H 1.48501 * 109.46989 * 329.99665 * 12 10 8 16 16 C 1.47483 * 110.99948 * 175.78347 * 4 3 2 17 17 C 1.53369 * 114.56630 * 134.27708 * 2 1 3 18 18 O 1.43350 * 88.44838 * 86.60477 * 17 2 1 19 19 C 1.43351 * 88.31913 * 28.15181 * 18 17 2 20 20 H 1.09002 * 109.47576 * 291.11155 * 1 2 3 21 21 H 1.08998 * 109.47406 * 51.11169 * 1 2 3 22 22 H 1.09000 * 109.47242 * 171.10497 * 1 2 3 23 23 H 1.09002 * 109.47145 * 188.70806 * 3 2 1 24 24 H 1.09006 * 109.47164 * 308.70103 * 3 2 1 25 25 H 1.09000 * 113.47915 * 253.46897 * 5 4 3 26 26 H 1.08996 * 113.47785 * 23.93985 * 5 4 3 27 27 H 1.09004 * 114.17369 * 87.62035 * 6 5 4 28 28 H 1.08993 * 109.47325 * 28.83870 * 7 6 5 29 29 H 1.09003 * 109.47444 * 148.83794 * 7 6 5 30 30 H 0.97001 * 119.99968 * 179.97438 * 11 10 8 31 31 H 1.08991 * 113.47635 * 336.06309 * 16 4 3 32 32 H 1.09003 * 113.47350 * 106.46896 * 16 4 3 33 33 H 1.08999 * 113.38894 * 331.70231 * 17 2 1 34 34 H 1.08997 * 113.43528 * 201.51419 * 17 2 1 35 35 H 1.09002 * 113.39114 * 86.74603 * 19 18 17 36 36 H 1.09000 * 113.39101 * 216.94789 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1417 1.4024 0.0000 4 7 1.8764 2.0523 1.2904 5 6 2.8195 1.5827 2.3224 6 6 2.9174 3.0336 2.8141 7 6 4.3307 3.4677 3.2075 8 6 4.5480 3.2013 4.6747 9 1 3.7572 2.7655 5.2674 10 6 5.7562 3.5139 5.2607 11 7 6.7194 4.0441 4.5390 12 14 6.0257 3.1829 7.0793 13 1 6.5756 1.8150 7.2573 14 1 6.9838 4.1767 7.6266 15 1 4.7319 3.2940 7.7997 16 6 2.5375 3.3686 1.3649 17 6 2.1675 -0.9738 0.9987 18 8 2.0742 -1.9979 0.0000 19 6 2.1675 -0.9738 -0.9986 20 1 -0.3634 0.3701 0.9587 21 1 -0.3634 0.6451 -0.7999 22 1 -0.3634 -1.0153 -0.1589 23 1 3.2180 1.3293 -0.1556 24 1 1.6980 1.9924 -0.8020 25 1 2.3673 0.9076 3.0489 26 1 3.7542 1.1986 1.9140 27 1 2.1603 3.3080 3.5488 28 1 5.0593 2.9048 2.6242 29 1 4.4520 4.5328 3.0098 30 1 7.5693 4.2644 4.9514 31 1 3.3969 3.4611 0.7010 32 1 1.8463 4.2071 1.2789 33 1 1.5463 -1.1646 1.8737 34 1 3.1939 -0.7164 1.2601 35 1 3.1940 -0.7158 -1.2594 36 1 1.5463 -1.1648 -1.8737 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261028571.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:50 Heat of formation + Delta-G solvation = -6.387838 kcal Electronic energy + Delta-G solvation = -15864.741034 eV Core-core repulsion = 13350.206309 eV Total energy + Delta-G solvation = -2514.534726 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.27135 -40.61654 -35.42119 -34.20575 -31.72664 -28.79422 -27.67765 -27.39244 -26.39300 -25.46988 -22.89983 -20.56883 -19.61263 -18.46754 -17.26687 -17.11762 -17.06516 -16.50180 -16.25682 -15.56168 -15.37483 -14.45940 -14.38556 -13.96272 -13.60884 -13.48896 -13.25914 -12.89216 -12.80119 -12.76495 -12.61443 -12.36248 -11.76371 -11.65289 -11.45836 -11.30903 -10.96845 -10.88223 -10.72024 -10.51407 -9.78407 -8.18250 -6.28014 1.41393 1.41685 1.52921 2.42203 2.86524 2.98746 3.14977 3.35642 3.70216 3.85901 3.98267 4.04004 4.16942 4.33388 4.42818 4.51093 4.58049 4.60544 4.69522 4.80926 4.88161 4.90933 4.93624 4.96330 5.06013 5.08668 5.18224 5.25344 5.28912 5.43598 5.52274 5.71765 5.85815 6.16129 6.28887 6.88197 7.40986 8.93204 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040125 B = 0.005797 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.648309 B = 4829.049867 C = 5107.817532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.113 4.113 3 C 0.031 3.969 4 N -0.464 5.464 5 C 0.016 3.984 6 C -0.105 4.105 7 C 0.038 3.962 8 C -0.534 4.534 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.934 5.934 12 Si 0.960 3.040 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.006 3.994 17 C 0.031 3.969 18 O -0.393 6.393 19 C 0.037 3.963 20 H 0.061 0.939 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.041 0.959 24 H 0.094 0.906 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.084 0.916 28 H -0.007 1.007 29 H -0.006 1.006 30 H 0.262 0.738 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.446 -6.765 -10.283 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.114 4.114 3 C -0.098 4.098 4 N -0.186 5.186 5 C -0.113 4.113 6 C -0.124 4.124 7 C 0.001 3.999 8 C -0.572 4.572 9 H 0.077 0.923 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.785 3.215 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.188 1.188 16 C -0.122 4.122 17 C -0.045 4.045 18 O -0.313 6.313 19 C -0.040 4.040 20 H 0.080 0.920 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.112 0.888 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.051 -7.086 -10.225 16.640 hybrid contribution 1.637 0.173 0.780 1.822 sum -9.413 -6.913 -9.445 15.020 Atomic orbital electron populations 1.21330 0.90456 1.01908 1.02973 1.23072 0.98313 0.93732 0.96287 1.22634 0.98524 0.94830 0.93765 1.68836 1.41397 1.03287 1.05036 1.23783 0.94579 0.97561 0.95363 1.22671 0.97953 0.96131 0.95674 1.18907 0.91230 0.94682 0.95113 1.21654 0.98936 1.40585 0.95987 0.92292 1.25917 0.95984 0.95004 1.02781 1.70086 1.05078 1.44413 1.37915 0.85525 0.78258 0.77972 0.79783 1.19956 1.20908 1.18792 1.23835 0.97626 0.94117 0.96649 1.23886 1.00706 0.86195 0.93753 1.89809 1.94600 1.27264 1.19581 1.23923 1.01320 0.85250 0.93534 0.92042 0.90799 0.92240 0.94082 0.88809 0.90406 0.92436 0.89781 0.98829 0.98794 0.92882 0.91841 0.89170 0.89710 0.90896 0.89749 0.87638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 9.21 71.98 0.66 -1.50 16 2 C -0.11 -2.50 1.28 -51.94 -0.07 -2.56 16 3 C 0.03 0.74 4.39 86.30 0.38 1.12 16 4 N -0.46 -13.54 6.30 -927.87 -5.85 -19.39 16 5 C 0.02 0.54 5.30 83.58 0.44 0.99 16 6 C -0.11 -4.18 3.93 -10.45 -0.04 -4.22 16 7 C 0.04 1.95 4.88 29.85 0.15 2.09 16 8 C -0.53 -29.79 9.09 25.60 0.23 -29.56 16 9 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 10 C 0.00 0.04 5.46 84.65 0.46 0.50 16 11 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 12 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 16 C 0.01 0.21 7.30 83.58 0.61 0.82 16 17 C 0.03 0.81 6.47 63.84 0.41 1.22 16 18 O -0.39 -10.63 12.57 -148.98 -1.87 -12.50 16 19 C 0.04 0.75 7.89 63.84 0.50 1.26 16 20 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.06 1.14 7.97 -2.39 -0.02 1.12 16 23 H 0.04 1.03 7.39 -2.39 -0.02 1.01 16 24 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.08 2.61 8.03 -2.39 -0.02 2.59 16 26 H 0.06 2.06 6.63 -2.39 -0.02 2.04 16 27 H 0.08 3.40 8.12 -2.39 -0.02 3.39 16 28 H -0.01 -0.36 7.81 -2.39 -0.02 -0.38 16 29 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.06 2.04 7.82 -2.39 -0.02 2.02 16 32 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.08 2.17 8.13 -2.39 -0.02 2.15 16 34 H 0.07 1.98 6.79 -2.39 -0.02 1.96 16 35 H 0.08 1.60 7.99 -2.39 -0.02 1.58 16 36 H 0.11 1.70 8.13 -2.39 -0.02 1.68 16 Total: -1.00 -62.35 289.78 -0.64 -62.99 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.03 Total: 8.75 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 3.74 Total: -29.85 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -5.57 Total: -75.44 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -1.87 Total: -12.50 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -62.35 -0.64 -62.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261028571.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.598 kcal (2) G-P(sol) polarization free energy of solvation -62.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds