Wall clock time and date at job start Mon Mar 30 2020 02:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47080 * 2 1 4 4 C 1.50702 * 109.46022 * 307.09267 * 3 2 1 5 5 H 1.07997 * 120.00551 * 114.92722 * 4 3 2 6 6 C 1.37884 * 119.99789 * 295.20340 * 4 3 2 7 7 N 1.31514 * 120.00033 * 199.38801 * 6 4 3 8 8 Si 1.86799 * 120.00159 * 19.38705 * 6 4 3 9 9 H 1.48498 * 109.47300 * 85.60469 * 8 6 4 10 10 H 1.48494 * 109.47128 * 205.60713 * 8 6 4 11 11 H 1.48506 * 109.47016 * 325.60488 * 8 6 4 12 12 C 1.53040 * 109.45258 * 67.05584 * 3 2 1 13 13 C 1.53193 * 109.31265 * 181.37713 * 12 3 2 14 14 N 1.46919 * 108.77802 * 305.36561 * 13 12 3 15 15 C 1.34776 * 120.63205 * 233.58541 * 14 13 12 16 16 C 1.50699 * 119.99950 * 354.60549 * 15 14 13 17 17 O 1.21285 * 119.99852 * 174.60783 * 15 14 13 18 18 C 1.46934 * 118.73767 * 53.60962 * 14 13 12 19 19 C 1.53038 * 109.45984 * 187.12159 * 3 2 1 20 20 H 1.09000 * 109.46804 * 62.25485 * 1 2 3 21 21 H 1.08999 * 109.47020 * 182.24825 * 1 2 3 22 22 H 1.08999 * 109.46955 * 302.25212 * 1 2 3 23 23 H 1.08997 * 109.46793 * 239.99600 * 2 1 3 24 24 H 1.08999 * 109.47121 * 119.99565 * 2 1 3 25 25 H 0.96996 * 120.00361 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.49480 * 301.33432 * 12 3 2 27 27 H 1.09003 * 109.49462 * 61.42687 * 12 3 2 28 28 H 1.09004 * 109.58531 * 185.57862 * 13 12 3 29 29 H 1.08999 * 109.58537 * 65.15779 * 13 12 3 30 30 H 1.09000 * 109.47088 * 354.55650 * 16 15 14 31 31 H 1.08995 * 109.46922 * 114.55574 * 16 15 14 32 32 H 1.09003 * 109.46895 * 234.55551 * 16 15 14 33 33 H 1.08991 * 109.58529 * 186.60165 * 18 14 13 34 34 H 1.09003 * 109.58331 * 66.17522 * 18 14 13 35 35 H 1.09002 * 109.49720 * 298.57912 * 19 3 2 36 36 H 1.09001 * 109.50102 * 58.67729 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3994 2.2015 -1.1334 5 1 0.7306 3.0230 -0.9234 6 6 1.6628 1.8434 -2.4387 7 7 1.4360 2.6969 -3.4132 8 14 2.3417 0.1461 -2.8228 9 1 1.2201 -0.8191 -2.9476 10 1 3.0988 0.1931 -4.0994 11 1 3.2461 -0.2850 -1.7265 12 6 1.6795 2.1105 1.3289 13 6 2.1612 3.5646 1.3120 14 7 3.5960 3.5840 0.9967 15 6 4.4674 4.2242 1.8012 16 6 3.9616 5.0306 2.9694 17 8 5.6585 4.1513 1.5849 18 6 4.0628 2.8925 -0.2128 19 6 3.5599 1.4459 -0.1789 20 1 -0.3633 0.4784 -0.9095 21 1 -0.3633 -1.0269 0.0403 22 1 -0.3633 0.5484 0.8691 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6216 2.4452 -4.3314 26 1 0.5985 2.0868 1.4665 27 1 2.1627 1.5766 2.1472 28 1 1.9960 4.0156 2.2905 29 1 1.6126 4.1224 0.5531 30 1 2.8722 5.0590 2.9469 31 1 4.2939 4.5702 3.8998 32 1 4.3529 6.0461 2.9065 33 1 5.1524 2.9000 -0.2404 34 1 3.6693 3.3955 -1.0962 35 1 4.0254 0.9183 0.6536 36 1 3.8173 0.9493 -1.1144 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306465538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:53 Heat of formation + Delta-G solvation = -23.514043 kcal Electronic energy + Delta-G solvation = -16931.037168 eV Core-core repulsion = 14415.759794 eV Total energy + Delta-G solvation = -2515.277374 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.66977 -37.60291 -34.36497 -31.95670 -31.17888 -29.77774 -28.78183 -25.49688 -24.03657 -22.85757 -21.19809 -19.48902 -18.23088 -16.64608 -15.69144 -15.35146 -15.11405 -14.92586 -13.76094 -13.45997 -13.32779 -13.04268 -12.82417 -12.66948 -12.35896 -12.06723 -11.62898 -11.51812 -11.17485 -11.15437 -10.59033 -10.55966 -10.16805 -10.09053 -9.91125 -9.49237 -9.27525 -8.99824 -8.56385 -8.29527 -7.81800 -6.16909 -4.06506 3.10223 3.23410 3.32275 3.39766 3.68287 4.37574 5.04237 5.14285 5.27424 5.50909 5.59607 5.73214 5.83368 5.91506 6.00545 6.06583 6.23664 6.24711 6.32460 6.35355 6.49571 6.60054 6.65460 6.70691 6.81202 6.94383 6.99433 7.13954 7.20633 7.31204 7.39644 7.79446 8.10514 8.46975 8.69242 8.89827 9.51854 10.95679 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032287 B = 0.010894 C = 0.009821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.024791 B = 2569.670299 C = 2850.467837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.044 3.956 4 C -0.503 4.503 5 H 0.075 0.925 6 C 0.080 3.920 7 N -0.887 5.887 8 Si 0.857 3.143 9 H -0.283 1.283 10 H -0.303 1.303 11 H -0.240 1.240 12 C -0.108 4.108 13 C 0.111 3.889 14 N -0.594 5.594 15 C 0.504 3.496 16 C -0.178 4.178 17 O -0.570 6.570 18 C 0.123 3.877 19 C -0.132 4.132 20 H 0.070 0.930 21 H 0.026 0.974 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.034 0.966 25 H 0.263 0.737 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.035 0.965 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.200 -0.180 9.433 9.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C 0.043 3.957 4 C -0.540 4.540 5 H 0.093 0.907 6 C -0.122 4.122 7 N -0.523 5.523 8 Si 0.689 3.311 9 H -0.210 1.210 10 H -0.231 1.231 11 H -0.167 1.167 12 C -0.146 4.146 13 C -0.011 4.011 14 N -0.326 5.326 15 C 0.292 3.708 16 C -0.237 4.237 17 O -0.451 6.451 18 C 0.001 3.999 19 C -0.170 4.170 20 H 0.089 0.911 21 H 0.045 0.955 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.400 -0.168 9.104 9.114 hybrid contribution 0.174 -1.066 -0.434 1.164 sum 0.574 -1.234 8.670 8.776 Atomic orbital electron populations 1.21668 0.96230 0.98616 1.02754 1.22019 0.96279 0.98882 0.99060 1.18496 0.91335 0.91882 0.94033 1.20704 1.28531 1.16203 0.88538 0.90748 1.24896 0.94648 0.96232 0.96438 1.70003 1.48384 1.33705 1.00249 0.87834 0.79815 0.86865 0.76616 1.21007 1.23125 1.16670 1.21809 1.00257 0.94564 0.98010 1.21867 0.80402 0.98616 1.00212 1.48173 1.07877 1.51636 1.24886 1.20676 0.86199 0.79958 0.83962 1.21990 1.03250 1.01087 0.97404 1.90645 1.16274 1.64401 1.73756 1.21589 0.98341 0.93187 0.86733 1.22445 0.98577 0.95207 1.00812 0.91073 0.95515 0.93532 0.93379 0.94744 0.92726 0.91320 0.94053 0.91245 0.89991 0.89897 0.89517 0.89378 0.91337 0.89507 0.94647 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.29 37.16 0.35 -2.19 16 2 C -0.13 -2.51 4.27 -26.73 -0.11 -2.63 16 3 C 0.04 0.90 0.29 -155.62 -0.04 0.86 16 4 C -0.50 -12.20 5.09 -34.44 -0.18 -12.37 16 5 H 0.07 1.96 7.07 -52.49 -0.37 1.59 16 6 C 0.08 2.11 5.24 -17.82 -0.09 2.01 16 7 N -0.89 -25.17 13.96 55.43 0.77 -24.39 16 8 Si 0.86 20.30 23.19 -169.99 -3.94 16.36 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.24 -5.30 4.26 56.52 0.24 -5.06 16 12 C -0.11 -1.91 4.68 -26.61 -0.12 -2.04 16 13 C 0.11 1.86 5.90 -3.71 -0.02 1.84 16 14 N -0.59 -11.17 2.97 -172.77 -0.51 -11.68 16 15 C 0.50 9.14 7.80 -10.99 -0.09 9.05 16 16 C -0.18 -2.24 10.01 36.00 0.36 -1.88 16 17 O -0.57 -12.48 16.52 5.55 0.09 -12.39 16 18 C 0.12 2.60 6.10 -3.71 -0.02 2.58 16 19 C -0.13 -2.80 4.38 -26.61 -0.12 -2.91 16 20 H 0.07 1.50 7.12 -51.93 -0.37 1.13 16 21 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.79 6.51 -51.93 -0.34 0.45 16 23 H 0.05 1.03 2.81 -51.93 -0.15 0.89 16 24 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.07 1.15 6.53 -51.93 -0.34 0.81 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.91 5.25 -51.93 -0.27 0.63 16 29 H 0.08 1.51 6.82 -51.93 -0.35 1.16 16 30 H 0.08 0.89 5.30 -51.93 -0.28 0.61 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.46 7.00 -51.93 -0.36 1.10 16 34 H 0.09 2.03 7.34 -51.93 -0.38 1.65 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.62 3.72 -51.93 -0.19 1.43 16 LS Contribution 260.77 15.07 3.93 3.93 Total: -1.00 -29.12 260.77 -4.99 -34.11 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.24 Total: 1.75 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -0.09 Total: -7.68 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.26 Total: -36.07 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -3.94 Total: 16.36 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.12 -4.99 -34.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306465538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.593 kcal (2) G-P(sol) polarization free energy of solvation -29.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds