Wall clock time and date at job start Mon Mar 30 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47080 * 2 1 4 4 C 1.50702 * 109.46022 * 307.09267 * 3 2 1 5 5 H 1.07997 * 120.00551 * 114.92722 * 4 3 2 6 6 C 1.37884 * 119.99789 * 295.20340 * 4 3 2 7 7 N 1.31514 * 120.00033 * 199.38801 * 6 4 3 8 8 Si 1.86799 * 120.00159 * 19.38705 * 6 4 3 9 9 H 1.48498 * 109.47300 * 85.60469 * 8 6 4 10 10 H 1.48494 * 109.47128 * 205.60713 * 8 6 4 11 11 H 1.48506 * 109.47016 * 325.60488 * 8 6 4 12 12 C 1.53040 * 109.45258 * 67.05584 * 3 2 1 13 13 C 1.53193 * 109.31265 * 181.37713 * 12 3 2 14 14 N 1.46919 * 108.77802 * 305.36561 * 13 12 3 15 15 C 1.34776 * 120.63205 * 233.58541 * 14 13 12 16 16 C 1.50699 * 119.99950 * 354.60549 * 15 14 13 17 17 O 1.21285 * 119.99852 * 174.60783 * 15 14 13 18 18 C 1.46934 * 118.73767 * 53.60962 * 14 13 12 19 19 C 1.53038 * 109.45984 * 187.12159 * 3 2 1 20 20 H 1.09000 * 109.46804 * 62.25485 * 1 2 3 21 21 H 1.08999 * 109.47020 * 182.24825 * 1 2 3 22 22 H 1.08999 * 109.46955 * 302.25212 * 1 2 3 23 23 H 1.08997 * 109.46793 * 239.99600 * 2 1 3 24 24 H 1.08999 * 109.47121 * 119.99565 * 2 1 3 25 25 H 0.96996 * 120.00361 * 179.97438 * 7 6 4 26 26 H 1.08996 * 109.49480 * 301.33432 * 12 3 2 27 27 H 1.09003 * 109.49462 * 61.42687 * 12 3 2 28 28 H 1.09004 * 109.58531 * 185.57862 * 13 12 3 29 29 H 1.08999 * 109.58537 * 65.15779 * 13 12 3 30 30 H 1.09000 * 109.47088 * 354.55650 * 16 15 14 31 31 H 1.08995 * 109.46922 * 114.55574 * 16 15 14 32 32 H 1.09003 * 109.46895 * 234.55551 * 16 15 14 33 33 H 1.08991 * 109.58529 * 186.60165 * 18 14 13 34 34 H 1.09003 * 109.58331 * 66.17522 * 18 14 13 35 35 H 1.09002 * 109.49720 * 298.57912 * 19 3 2 36 36 H 1.09001 * 109.50102 * 58.67729 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3994 2.2015 -1.1334 5 1 0.7306 3.0230 -0.9234 6 6 1.6628 1.8434 -2.4387 7 7 1.4360 2.6969 -3.4132 8 14 2.3417 0.1461 -2.8228 9 1 1.2201 -0.8191 -2.9476 10 1 3.0988 0.1931 -4.0994 11 1 3.2461 -0.2850 -1.7265 12 6 1.6795 2.1105 1.3289 13 6 2.1612 3.5646 1.3120 14 7 3.5960 3.5840 0.9967 15 6 4.4674 4.2242 1.8012 16 6 3.9616 5.0306 2.9694 17 8 5.6585 4.1513 1.5849 18 6 4.0628 2.8925 -0.2128 19 6 3.5599 1.4459 -0.1789 20 1 -0.3633 0.4784 -0.9095 21 1 -0.3633 -1.0269 0.0403 22 1 -0.3633 0.5484 0.8691 23 1 1.8933 -0.5139 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6216 2.4452 -4.3314 26 1 0.5985 2.0868 1.4665 27 1 2.1627 1.5766 2.1472 28 1 1.9960 4.0156 2.2905 29 1 1.6126 4.1224 0.5531 30 1 2.8722 5.0590 2.9469 31 1 4.2939 4.5702 3.8998 32 1 4.3529 6.0461 2.9065 33 1 5.1524 2.9000 -0.2404 34 1 3.6693 3.3955 -1.0962 35 1 4.0254 0.9183 0.6536 36 1 3.8173 0.9493 -1.1144 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306465538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:52 Heat of formation + Delta-G solvation = -43.018595 kcal Electronic energy + Delta-G solvation = -16931.882949 eV Core-core repulsion = 14415.759794 eV Total energy + Delta-G solvation = -2516.123154 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.18205 -39.19104 -35.94510 -33.90854 -32.67899 -31.23923 -30.06045 -27.32076 -25.69263 -24.34994 -22.74805 -21.13027 -19.84084 -18.09363 -17.53338 -17.03440 -16.64856 -16.38875 -15.32111 -15.08330 -14.93240 -14.77156 -14.35947 -14.25047 -13.78641 -13.51582 -13.01195 -12.93320 -12.78960 -12.55046 -12.26686 -12.25376 -11.92987 -11.79019 -11.51778 -11.16326 -10.81535 -10.72462 -10.43354 -10.05250 -9.40726 -8.22368 -6.10534 1.32865 1.38409 1.45328 1.70873 2.25774 2.40237 3.15378 3.78236 4.01559 4.16000 4.28388 4.40604 4.42817 4.57869 4.63708 4.66251 4.70568 4.79039 4.84902 4.94495 5.03039 5.08793 5.17285 5.24939 5.25836 5.30697 5.38516 5.51969 5.62978 5.71997 5.81765 5.92499 6.46500 6.69043 6.89873 7.26480 7.49683 8.93654 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032287 B = 0.010894 C = 0.009821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.024791 B = 2569.670299 C = 2850.467837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 C 0.036 3.964 4 C -0.472 4.472 5 H 0.047 0.953 6 C 0.031 3.969 7 N -0.938 5.938 8 Si 0.896 3.104 9 H -0.284 1.284 10 H -0.322 1.322 11 H -0.210 1.210 12 C -0.106 4.106 13 C 0.111 3.889 14 N -0.599 5.599 15 C 0.496 3.504 16 C -0.166 4.166 17 O -0.614 6.614 18 C 0.128 3.872 19 C -0.129 4.129 20 H 0.038 0.962 21 H 0.047 0.953 22 H 0.066 0.934 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.257 0.743 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.119 0.881 29 H 0.057 0.943 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.520 -0.870 12.783 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.165 4.165 3 C 0.035 3.965 4 C -0.510 4.510 5 H 0.065 0.935 6 C -0.166 4.166 7 N -0.579 5.579 8 Si 0.728 3.272 9 H -0.211 1.211 10 H -0.252 1.252 11 H -0.135 1.135 12 C -0.144 4.144 13 C -0.011 4.011 14 N -0.330 5.330 15 C 0.287 3.713 16 C -0.225 4.225 17 O -0.498 6.498 18 C 0.005 3.995 19 C -0.167 4.167 20 H 0.057 0.943 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.076 0.924 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.062 -0.872 12.500 12.530 hybrid contribution 0.258 -0.779 -1.427 1.646 sum 0.320 -1.651 11.073 11.200 Atomic orbital electron populations 1.21616 0.95311 1.00004 1.02018 1.22006 0.97154 0.97788 0.99555 1.18578 0.90719 0.92703 0.94497 1.20891 1.26181 1.14571 0.89351 0.93514 1.25460 0.95813 0.98602 0.96758 1.70128 1.51812 1.35516 1.00404 0.87210 0.79662 0.83960 0.76377 1.21111 1.25189 1.13523 1.21794 1.01386 0.94798 0.96408 1.21995 0.78693 0.98352 1.02026 1.48286 1.09010 1.51590 1.24132 1.21748 0.85483 0.79335 0.84750 1.22014 1.04543 1.00669 0.95245 1.90626 1.18321 1.65734 1.75077 1.21260 0.97675 0.93477 0.87070 1.22380 0.98850 0.94930 1.00552 0.94300 0.93396 0.91510 0.95026 0.91942 0.93395 0.90003 0.91840 0.86381 0.92418 0.87621 0.87244 0.88028 0.92225 0.92975 0.93029 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 9.29 71.98 0.67 -3.91 16 2 C -0.13 -4.73 4.27 30.59 0.13 -4.60 16 3 C 0.04 1.42 0.29 -52.90 -0.02 1.41 16 4 C -0.47 -23.08 5.09 25.60 0.13 -22.95 16 5 H 0.05 2.52 7.07 -2.91 -0.02 2.50 16 6 C 0.03 1.67 5.24 84.66 0.44 2.11 16 7 N -0.94 -55.74 13.96 21.45 0.30 -55.44 16 8 Si 0.90 42.38 23.19 68.60 1.59 43.97 16 9 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 10 H -0.32 -16.13 7.11 99.48 0.71 -15.42 16 11 H -0.21 -8.91 4.26 99.48 0.42 -8.49 16 12 C -0.11 -3.35 4.68 30.67 0.14 -3.20 16 13 C 0.11 3.37 5.90 86.36 0.51 3.88 16 14 N -0.60 -21.43 2.97 -818.90 -2.43 -23.87 16 15 C 0.50 16.82 7.80 87.66 0.68 17.50 16 16 C -0.17 -3.43 10.01 71.24 0.71 -2.72 16 17 O -0.61 -26.26 16.52 -3.04 -0.05 -26.31 16 18 C 0.13 5.43 6.10 86.36 0.53 5.95 16 19 C -0.13 -5.27 4.38 30.67 0.13 -5.13 16 20 H 0.04 1.58 7.12 -2.39 -0.02 1.56 16 21 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.07 2.01 6.51 -2.39 -0.02 2.00 16 23 H 0.03 1.28 2.81 -2.39 -0.01 1.27 16 24 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.26 14.84 8.31 -92.71 -0.77 14.06 16 26 H 0.08 2.40 6.53 -2.39 -0.02 2.38 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.12 2.46 5.25 -2.39 -0.01 2.44 16 29 H 0.06 2.05 6.82 -2.39 -0.02 2.04 16 30 H 0.11 1.67 5.30 -2.39 -0.01 1.66 16 31 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.59 7.00 -2.39 -0.02 2.57 16 34 H 0.05 2.54 7.34 -2.39 -0.02 2.52 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 2.49 3.72 -2.39 -0.01 2.48 16 Total: -1.00 -65.82 260.77 4.26 -61.55 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.79 Total: 11.75 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 4.07 Total: -11.65 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -2.13 Total: -79.31 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.59 Total: 43.97 kcal Total: -65.82 4.26 -61.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306465538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.533 kcal (2) G-P(sol) polarization free energy of solvation -65.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds