Wall clock time and date at job start Mon Mar 30 2020 02:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 110.80937 * 2 1 4 4 C 1.56025 * 110.74743 * 123.31107 * 2 1 3 5 5 N 1.50314 * 106.16170 * 111.88463 * 4 2 1 6 6 C 1.46902 * 110.99779 * 214.03142 * 5 4 2 7 7 C 1.50708 * 109.46807 * 175.94986 * 6 5 4 8 8 H 1.07998 * 119.99838 * 5.21712 * 7 6 5 9 9 C 1.37879 * 119.99574 * 185.49366 * 7 6 5 10 10 N 1.31509 * 119.99356 * 179.72294 * 9 7 6 11 11 Si 1.86790 * 120.00108 * 359.72433 * 9 7 6 12 12 H 1.48496 * 109.47326 * 90.00362 * 11 9 7 13 13 H 1.48504 * 109.47064 * 209.99734 * 11 9 7 14 14 H 1.48503 * 109.47393 * 329.99659 * 11 9 7 15 15 C 1.44071 * 102.77307 * 332.75954 * 5 4 2 16 16 H 1.09000 * 109.95144 * 292.93082 * 15 5 4 17 17 C 1.50697 * 127.40248 * 156.88487 * 15 5 4 18 18 O 1.45992 * 102.70684 * 205.76231 * 17 15 5 19 19 C 1.45483 * 109.05802 * 25.30653 * 18 17 15 20 20 C 1.50429 * 105.21500 * 6.84763 * 19 18 17 21 21 H 1.08998 * 110.15048 * 81.30439 * 20 19 18 22 22 H 1.08997 * 109.47364 * 298.14083 * 1 2 3 23 23 H 1.09004 * 109.46729 * 58.13943 * 1 2 3 24 24 H 1.09004 * 109.47061 * 178.13821 * 1 2 3 25 25 H 1.08996 * 109.47554 * 181.85866 * 3 2 1 26 26 H 1.09001 * 109.47189 * 301.86228 * 3 2 1 27 27 H 1.09007 * 109.46869 * 61.86052 * 3 2 1 28 28 H 1.08999 * 110.11377 * 352.71549 * 4 2 1 29 29 H 1.08993 * 110.16976 * 231.08927 * 4 2 1 30 30 H 1.09001 * 109.47154 * 55.95139 * 6 5 4 31 31 H 1.09001 * 109.47138 * 295.94642 * 6 5 4 32 32 H 0.97008 * 120.00008 * 180.02562 * 10 9 7 33 33 H 1.08998 * 110.76436 * 87.45920 * 17 15 5 34 34 H 1.08995 * 110.92353 * 324.13762 * 17 15 5 35 35 H 1.08997 * 110.30205 * 247.91121 * 19 18 17 36 36 H 1.08998 * 110.29701 * 125.77706 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0736 1.4302 0.0000 4 6 2.0827 -0.8013 1.2193 5 7 2.7342 -2.0311 0.6513 6 6 2.5727 -3.1776 1.5553 7 6 3.1494 -4.4113 0.9099 8 1 3.6663 -4.3348 -0.0353 9 6 3.0123 -5.6385 1.5234 10 7 3.5108 -6.7158 0.9574 11 14 2.1184 -5.7707 3.1581 12 1 0.6731 -6.0093 2.9142 13 1 2.6814 -6.9006 3.9402 14 1 2.2900 -4.5075 3.9198 15 6 2.0103 -2.2363 -0.5774 16 1 0.9776 -2.5087 -0.3595 17 6 2.4753 -2.9852 -1.7996 18 8 1.7007 -2.3648 -2.8703 19 6 1.3340 -1.0149 -2.4706 20 6 2.0639 -0.7740 -1.1776 21 1 3.0969 -0.4890 -1.3770 22 1 -0.3634 0.4847 0.9061 23 1 -0.3633 0.5425 -0.8729 24 1 -0.3633 -1.0272 -0.0334 25 1 3.1627 1.4050 -0.0333 26 1 1.6955 1.9626 -0.8728 27 1 1.7495 1.9420 0.9063 28 1 1.2661 -1.0829 1.8841 29 1 2.8168 -0.2040 1.7600 30 1 1.5132 -3.3347 1.7573 31 1 3.0954 -2.9790 2.4910 32 1 3.4140 -7.5793 1.3888 33 1 2.2388 -4.0459 -1.7161 34 1 3.5434 -2.8406 -1.9617 35 1 0.2573 -0.9458 -2.3155 36 1 1.6548 -0.2968 -3.2253 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307142195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:38 Heat of formation + Delta-G solvation = -23.830362 kcal Electronic energy + Delta-G solvation = -16721.595631 eV Core-core repulsion = 14206.304541 eV Total energy + Delta-G solvation = -2515.291090 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.72735 -36.69523 -34.52467 -32.30085 -29.90074 -28.20359 -27.85548 -27.34895 -24.39187 -22.48374 -21.54531 -19.73082 -18.41792 -16.99175 -16.19898 -15.29982 -14.84606 -14.47118 -14.21810 -13.80111 -13.54996 -13.16839 -12.98977 -12.81596 -12.44973 -12.29056 -11.76879 -11.58165 -11.34446 -11.32118 -11.19781 -10.63726 -10.49795 -10.25205 -10.18493 -9.81749 -9.55861 -9.27311 -9.15797 -8.62767 -7.68092 -6.10462 -4.09017 3.24239 3.32562 3.34275 4.11436 4.27705 4.38077 4.66088 4.88801 5.05137 5.18088 5.22822 5.34594 5.54913 5.64034 5.68939 5.71842 5.80925 5.88510 5.91625 5.99831 6.05329 6.11070 6.21049 6.32170 6.33849 6.47605 6.54910 6.66174 6.71080 6.85335 7.17515 7.42638 7.74878 7.92029 8.55790 8.96888 9.50946 11.02146 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031693 B = 0.009562 C = 0.008078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.261066 B = 2927.415299 C = 3465.272912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 C -0.133 4.133 4 C 0.038 3.962 5 N -0.480 5.480 6 C 0.148 3.852 7 C -0.517 4.517 8 H 0.085 0.915 9 C 0.071 3.929 10 N -0.896 5.896 11 Si 0.875 3.125 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.268 1.268 15 C 0.056 3.944 16 H 0.046 0.954 17 C 0.076 3.924 18 O -0.396 6.396 19 C 0.068 3.932 20 C -0.147 4.147 21 H 0.089 0.911 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.077 0.923 30 H -0.013 1.013 31 H 0.031 0.969 32 H 0.264 0.736 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.451 13.909 -1.895 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.054 4.054 3 C -0.190 4.190 4 C -0.090 4.090 5 N -0.205 5.205 6 C 0.022 3.978 7 C -0.555 4.555 8 H 0.103 0.897 9 C -0.131 4.131 10 N -0.535 5.535 11 Si 0.702 3.298 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.192 1.192 15 C -0.055 4.055 16 H 0.064 0.936 17 C 0.001 3.999 18 O -0.316 6.316 19 C -0.009 4.009 20 C -0.166 4.166 21 H 0.108 0.892 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.005 0.995 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.892 13.649 -2.145 14.658 hybrid contribution -1.251 -0.350 1.399 1.910 sum -6.144 13.299 -0.746 14.669 Atomic orbital electron populations 1.21897 0.94375 1.01999 1.01540 1.20685 0.95198 0.95014 0.94532 1.21809 1.01134 0.94768 1.01307 1.23952 0.97235 0.92424 0.95404 1.64511 1.48953 1.03967 1.03041 1.20417 0.94536 0.89621 0.93248 1.21034 1.36272 0.89268 1.08917 0.89718 1.24887 0.95281 0.95692 0.97235 1.69885 1.45661 0.98808 1.39107 0.86872 0.80181 0.78045 0.84721 1.20367 1.21070 1.19240 1.22765 0.96665 0.93470 0.92576 0.93626 1.22546 0.95352 0.97818 0.84230 1.89301 1.74053 1.26548 1.41658 1.22139 0.98685 0.85164 0.94878 1.22761 1.01452 0.98045 0.94303 0.89235 0.92561 0.92428 0.92419 0.92179 0.92774 0.92746 0.93680 0.90447 0.99499 0.95072 0.92567 0.87977 0.91385 0.91860 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.38 37.16 0.27 -1.46 16 2 C -0.05 -0.74 0.90 -154.04 -0.14 -0.88 16 3 C -0.13 -1.48 8.42 37.16 0.31 -1.17 16 4 C 0.04 0.62 6.08 -0.29 0.00 0.62 16 5 N -0.48 -9.99 5.34 -223.24 -1.19 -11.19 16 6 C 0.15 3.57 3.67 -4.97 -0.02 3.55 16 7 C -0.52 -14.37 8.84 -34.44 -0.30 -14.67 16 8 H 0.08 2.52 6.52 -52.49 -0.34 2.17 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 10 N -0.90 -27.05 13.96 55.43 0.77 -26.27 16 11 Si 0.87 21.36 27.36 -169.99 -4.65 16.71 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.27 -6.30 6.70 56.52 0.38 -5.92 16 15 C 0.06 1.09 1.80 -67.54 -0.12 0.97 16 16 H 0.05 0.95 6.77 -51.93 -0.35 0.59 16 17 C 0.08 1.54 6.16 36.00 0.22 1.77 16 18 O -0.40 -7.44 11.59 -35.23 -0.41 -7.85 16 19 C 0.07 1.02 7.36 35.87 0.26 1.29 16 20 C -0.15 -2.29 2.32 -90.22 -0.21 -2.50 16 21 H 0.09 1.46 7.92 -51.93 -0.41 1.05 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 24 H 0.06 0.80 6.87 -51.93 -0.36 0.44 16 25 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.75 7.36 -51.93 -0.38 0.37 16 29 H 0.08 1.20 7.76 -51.93 -0.40 0.80 16 30 H -0.01 -0.31 7.09 -51.93 -0.37 -0.67 16 31 H 0.03 0.76 7.57 -51.93 -0.39 0.37 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.10 2.27 7.73 -51.93 -0.40 1.87 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.06 0.88 6.75 -51.93 -0.35 0.53 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 274.66 15.07 4.14 4.14 Total: -1.00 -29.70 274.66 -7.01 -36.71 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.85 Total: -1.70 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 0.18 Total: -10.55 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.42 Total: -37.46 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.41 Total: -7.85 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.65 Total: 16.71 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.70 -7.01 -36.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307142195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.875 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds