Wall clock time and date at job start Mon Mar 30 2020 02:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 110.80937 * 2 1 4 4 C 1.56025 * 110.74743 * 123.31107 * 2 1 3 5 5 N 1.50314 * 106.16170 * 111.88463 * 4 2 1 6 6 C 1.46902 * 110.99779 * 214.03142 * 5 4 2 7 7 C 1.50708 * 109.46807 * 175.94986 * 6 5 4 8 8 H 1.07998 * 119.99838 * 5.21712 * 7 6 5 9 9 C 1.37879 * 119.99574 * 185.49366 * 7 6 5 10 10 N 1.31509 * 119.99356 * 179.72294 * 9 7 6 11 11 Si 1.86790 * 120.00108 * 359.72433 * 9 7 6 12 12 H 1.48496 * 109.47326 * 90.00362 * 11 9 7 13 13 H 1.48504 * 109.47064 * 209.99734 * 11 9 7 14 14 H 1.48503 * 109.47393 * 329.99659 * 11 9 7 15 15 C 1.44071 * 102.77307 * 332.75954 * 5 4 2 16 16 H 1.09000 * 109.95144 * 292.93082 * 15 5 4 17 17 C 1.50697 * 127.40248 * 156.88487 * 15 5 4 18 18 O 1.45992 * 102.70684 * 205.76231 * 17 15 5 19 19 C 1.45483 * 109.05802 * 25.30653 * 18 17 15 20 20 C 1.50429 * 105.21500 * 6.84763 * 19 18 17 21 21 H 1.08998 * 110.15048 * 81.30439 * 20 19 18 22 22 H 1.08997 * 109.47364 * 298.14083 * 1 2 3 23 23 H 1.09004 * 109.46729 * 58.13943 * 1 2 3 24 24 H 1.09004 * 109.47061 * 178.13821 * 1 2 3 25 25 H 1.08996 * 109.47554 * 181.85866 * 3 2 1 26 26 H 1.09001 * 109.47189 * 301.86228 * 3 2 1 27 27 H 1.09007 * 109.46869 * 61.86052 * 3 2 1 28 28 H 1.08999 * 110.11377 * 352.71549 * 4 2 1 29 29 H 1.08993 * 110.16976 * 231.08927 * 4 2 1 30 30 H 1.09001 * 109.47154 * 55.95139 * 6 5 4 31 31 H 1.09001 * 109.47138 * 295.94642 * 6 5 4 32 32 H 0.97008 * 120.00008 * 180.02562 * 10 9 7 33 33 H 1.08998 * 110.76436 * 87.45920 * 17 15 5 34 34 H 1.08995 * 110.92353 * 324.13762 * 17 15 5 35 35 H 1.08997 * 110.30205 * 247.91121 * 19 18 17 36 36 H 1.08998 * 110.29701 * 125.77706 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0736 1.4302 0.0000 4 6 2.0827 -0.8013 1.2193 5 7 2.7342 -2.0311 0.6513 6 6 2.5727 -3.1776 1.5553 7 6 3.1494 -4.4113 0.9099 8 1 3.6663 -4.3348 -0.0353 9 6 3.0123 -5.6385 1.5234 10 7 3.5108 -6.7158 0.9574 11 14 2.1184 -5.7707 3.1581 12 1 0.6731 -6.0093 2.9142 13 1 2.6814 -6.9006 3.9402 14 1 2.2900 -4.5075 3.9198 15 6 2.0103 -2.2363 -0.5774 16 1 0.9776 -2.5087 -0.3595 17 6 2.4753 -2.9852 -1.7996 18 8 1.7007 -2.3648 -2.8703 19 6 1.3340 -1.0149 -2.4706 20 6 2.0639 -0.7740 -1.1776 21 1 3.0969 -0.4890 -1.3770 22 1 -0.3634 0.4847 0.9061 23 1 -0.3633 0.5425 -0.8729 24 1 -0.3633 -1.0272 -0.0334 25 1 3.1627 1.4050 -0.0333 26 1 1.6955 1.9626 -0.8728 27 1 1.7495 1.9420 0.9063 28 1 1.2661 -1.0829 1.8841 29 1 2.8168 -0.2040 1.7600 30 1 1.5132 -3.3347 1.7573 31 1 3.0954 -2.9790 2.4910 32 1 3.4140 -7.5793 1.3888 33 1 2.2388 -4.0459 -1.7161 34 1 3.5434 -2.8406 -1.9617 35 1 0.2573 -0.9458 -2.3155 36 1 1.6548 -0.2968 -3.2253 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307142195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:38 Heat of formation + Delta-G solvation = -45.502173 kcal Electronic energy + Delta-G solvation = -16722.535392 eV Core-core repulsion = 14206.304541 eV Total energy + Delta-G solvation = -2516.230850 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.12020 -38.14008 -36.07884 -34.31051 -31.36386 -29.85445 -29.42489 -28.27808 -25.89872 -24.00931 -23.17495 -21.35506 -19.76018 -18.83464 -17.80141 -16.80632 -16.40631 -16.07557 -15.80857 -15.24153 -14.81604 -14.54198 -14.46422 -14.34520 -14.23565 -13.52010 -13.07572 -12.97936 -12.90809 -12.67346 -12.49403 -12.31468 -11.97116 -11.78015 -11.51971 -11.42870 -11.34376 -10.95110 -10.81305 -10.58671 -9.32034 -8.30665 -6.34455 1.30676 1.32468 1.43226 2.31094 2.68052 2.87869 3.02979 3.26782 3.75291 3.78929 4.09318 4.11944 4.26033 4.31509 4.42977 4.55554 4.62663 4.68359 4.71874 4.82928 4.84176 4.89077 4.92012 4.96253 5.07802 5.08820 5.16598 5.25072 5.38290 5.45186 5.54001 5.69562 5.88374 6.20474 6.50169 6.72921 7.29584 8.85248 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.031693 B = 0.009562 C = 0.008078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.261066 B = 2927.415299 C = 3465.272912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.046 4.046 3 C -0.127 4.127 4 C 0.033 3.967 5 N -0.498 5.498 6 C 0.158 3.842 7 C -0.521 4.521 8 H 0.049 0.951 9 C 0.011 3.989 10 N -0.943 5.943 11 Si 0.943 3.057 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.250 1.250 15 C 0.041 3.959 16 H 0.033 0.967 17 C 0.083 3.917 18 O -0.410 6.410 19 C 0.064 3.936 20 C -0.124 4.124 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.090 0.910 30 H -0.013 1.013 31 H 0.031 0.969 32 H 0.267 0.733 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.861 16.779 -1.029 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 C -0.185 4.185 4 C -0.094 4.094 5 N -0.222 5.222 6 C 0.031 3.969 7 C -0.559 4.559 8 H 0.068 0.932 9 C -0.186 4.186 10 N -0.584 5.584 11 Si 0.766 3.234 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.174 1.174 15 C -0.070 4.070 16 H 0.051 0.949 17 C 0.006 3.994 18 O -0.330 6.330 19 C -0.012 4.012 20 C -0.143 4.143 21 H 0.102 0.898 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.109 0.891 30 H 0.005 0.995 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.308 16.555 -1.285 17.763 hybrid contribution -0.771 -1.215 1.024 1.766 sum -7.079 15.340 -0.261 16.897 Atomic orbital electron populations 1.21897 0.92927 1.01254 1.03544 1.20717 0.96325 0.95973 0.91634 1.21777 1.00785 0.92752 1.03159 1.24122 0.97556 0.90880 0.96811 1.64412 1.50423 1.04272 1.03119 1.20173 0.93856 0.89459 0.93439 1.21289 1.35586 0.91239 1.07812 0.93242 1.25794 0.96264 0.95236 1.01343 1.70037 1.47629 0.99524 1.41193 0.85781 0.78890 0.78772 0.79920 1.19622 1.20587 1.17350 1.22728 0.95439 0.96573 0.92216 0.94911 1.22225 0.94995 0.96407 0.85764 1.89269 1.73837 1.28741 1.41140 1.22445 0.99722 0.83682 0.95343 1.22744 1.01626 0.95074 0.94817 0.89815 0.90843 0.90206 0.94533 0.92683 0.90831 0.91041 0.93556 0.89131 0.99529 0.95082 0.92427 0.91530 0.92273 0.90188 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 7.38 71.98 0.53 -2.39 16 2 C -0.05 -1.12 0.90 -51.88 -0.05 -1.17 16 3 C -0.13 -2.29 8.42 71.98 0.61 -1.68 16 4 C 0.03 1.03 6.08 86.68 0.53 1.56 16 5 N -0.50 -20.63 5.34 -860.20 -4.59 -25.23 16 6 C 0.16 7.63 3.67 85.56 0.31 7.95 16 7 C -0.52 -30.00 8.84 25.60 0.23 -29.77 16 8 H 0.05 3.12 6.52 -2.91 -0.02 3.10 16 9 C 0.01 0.67 5.47 84.66 0.46 1.13 16 10 N -0.94 -59.00 13.96 21.45 0.30 -58.70 16 11 Si 0.94 44.27 27.36 68.60 1.88 46.15 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.25 -10.92 6.70 99.48 0.67 -10.25 16 15 C 0.04 1.62 1.80 46.54 0.08 1.71 16 16 H 0.03 1.38 6.77 -2.39 -0.02 1.36 16 17 C 0.08 3.50 6.16 71.23 0.44 3.94 16 18 O -0.41 -15.39 11.59 -148.98 -1.73 -17.12 16 19 C 0.06 1.77 7.36 71.15 0.52 2.29 16 20 C -0.12 -3.62 2.32 -10.53 -0.02 -3.65 16 21 H 0.08 2.57 7.92 -2.39 -0.02 2.55 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.08 1.34 7.68 -2.39 -0.02 1.32 16 24 H 0.04 0.92 6.87 -2.38 -0.02 0.91 16 25 H 0.05 1.06 8.06 -2.39 -0.02 1.04 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.05 1.43 7.36 -2.39 -0.02 1.41 16 29 H 0.09 2.56 7.76 -2.39 -0.02 2.54 16 30 H -0.01 -0.62 7.09 -2.39 -0.02 -0.64 16 31 H 0.03 1.49 7.57 -2.39 -0.02 1.48 16 32 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 33 H 0.07 3.23 7.73 -2.39 -0.02 3.21 16 34 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.08 1.98 6.75 -2.39 -0.02 1.96 16 36 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -66.35 274.66 0.50 -65.86 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 1.00 Total: 9.12 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 3.64 Total: -20.08 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -4.29 Total: -83.93 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -1.73 Total: -17.12 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Total: -66.35 0.50 -65.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307142195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.353 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds