Wall clock time and date at job start Mon Mar 30 2020 03:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47083 * 2 1 4 4 C 1.50693 * 109.47364 * 239.99902 * 2 1 3 5 5 H 1.08000 * 120.00097 * 241.16917 * 4 2 1 6 6 C 1.37878 * 119.99993 * 61.16375 * 4 2 1 7 7 N 1.31513 * 120.00016 * 194.26575 * 6 4 2 8 8 Si 1.86797 * 120.00145 * 14.27041 * 6 4 2 9 9 H 1.48499 * 109.47234 * 84.55330 * 8 6 4 10 10 H 1.48494 * 109.47357 * 204.55542 * 8 6 4 11 11 H 1.48497 * 109.46881 * 324.55644 * 8 6 4 12 12 C 1.53001 * 109.47017 * 119.99708 * 2 1 3 13 13 N 1.46499 * 109.47127 * 300.00139 * 12 2 1 14 14 C 1.45762 * 117.94732 * 269.73659 * 13 12 2 15 15 C 1.53104 * 110.38556 * 160.74543 * 14 13 12 16 16 C 1.53345 * 108.53117 * 51.11388 * 15 14 13 17 17 C 1.53068 * 108.42584 * 292.31258 * 16 15 14 18 18 C 1.33357 * 117.94725 * 90.00269 * 13 12 2 19 19 O 1.21274 * 118.24411 * 2.24040 * 18 13 12 20 20 H 1.09001 * 109.47743 * 309.27637 * 1 2 3 21 21 H 1.09002 * 109.47397 * 69.27893 * 1 2 3 22 22 H 1.09007 * 109.47180 * 189.27164 * 1 2 3 23 23 H 1.08999 * 109.46955 * 180.02562 * 3 2 1 24 24 H 1.08998 * 109.46544 * 299.99978 * 3 2 1 25 25 H 1.08997 * 109.47116 * 59.99520 * 3 2 1 26 26 H 0.97002 * 120.00220 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47240 * 60.00287 * 12 2 1 28 28 H 1.09001 * 109.47342 * 180.02562 * 12 2 1 29 29 H 1.08994 * 109.30052 * 281.23810 * 14 13 12 30 30 H 1.09000 * 109.29522 * 40.61894 * 14 13 12 31 31 H 1.09005 * 109.80732 * 291.32792 * 15 14 13 32 32 H 1.08992 * 109.68130 * 170.83021 * 15 14 13 33 33 H 1.08994 * 109.67475 * 172.57810 * 16 15 14 34 34 H 1.09001 * 109.70326 * 52.05893 * 16 15 14 35 35 H 1.09001 * 109.40359 * 288.76728 * 17 16 15 36 36 H 1.09001 * 109.33188 * 168.98402 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6376 -1.5994 -1.1314 6 6 1.7192 -0.2255 -2.4825 7 7 1.9077 -0.9774 -3.5449 8 14 1.0273 1.4994 -2.6700 9 1 2.1432 2.4781 -2.7160 10 1 0.2426 1.5841 -3.9279 11 1 0.1461 1.8075 -1.5152 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 2.3779 1.0310 3.0066 15 6 1.5402 1.9357 3.9142 16 6 0.7824 1.0549 4.9149 17 6 -0.2587 0.2363 4.1474 18 6 0.3814 -0.4161 2.9557 19 8 -0.1967 -1.3433 2.4295 20 1 -0.3634 0.6506 0.7955 21 1 -0.3634 0.3636 -0.9612 22 1 -0.3634 -1.0143 0.1656 23 1 3.1299 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 1.6871 -0.6365 -4.4258 27 1 1.6766 -1.7488 1.2493 28 1 3.1299 -0.7208 1.2496 29 1 3.1900 0.5885 3.5835 30 1 2.7985 1.6265 2.1963 31 1 0.8285 2.5033 3.3145 32 1 2.1937 2.6219 4.4527 33 1 0.2838 1.6833 5.6528 34 1 1.4802 0.3838 5.4158 35 1 -1.0612 0.8936 3.8127 36 1 -0.6693 -0.5313 4.8034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307401085.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:28 Heat of formation + Delta-G solvation = -48.314838 kcal Electronic energy + Delta-G solvation = -16895.021158 eV Core-core repulsion = 14378.668342 eV Total energy + Delta-G solvation = -2516.352817 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60684 -38.09293 -37.17738 -34.61344 -33.24083 -30.56351 -28.13282 -27.77310 -26.88199 -24.97896 -23.14109 -20.97647 -19.29914 -18.15855 -17.73776 -17.27278 -17.12674 -16.34117 -15.19104 -15.12480 -14.93891 -14.70489 -14.47805 -14.20221 -14.12028 -13.76961 -13.60245 -12.75499 -12.54474 -12.46249 -12.32284 -12.02904 -11.90048 -11.74973 -11.67161 -11.61361 -11.07255 -10.67785 -10.58597 -10.35795 -9.38631 -8.32108 -6.31596 1.30401 1.34901 1.45439 1.80611 2.24838 2.32683 3.03840 3.74145 3.95781 3.98178 4.02883 4.19751 4.31679 4.45213 4.55501 4.62927 4.72929 4.77753 4.81804 4.90136 4.95205 4.96685 5.05185 5.07404 5.12905 5.18498 5.21756 5.42015 5.46324 5.59221 5.77074 5.82025 6.31523 6.70929 6.74034 7.32638 7.38957 8.85084 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041137 B = 0.009361 C = 0.008828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.488667 B = 2990.286458 C = 3171.063792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 C -0.144 4.144 4 C -0.513 4.513 5 H 0.031 0.969 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.946 3.054 9 H -0.272 1.272 10 H -0.316 1.316 11 H -0.225 1.225 12 C 0.138 3.862 13 N -0.595 5.595 14 C 0.093 3.907 15 C -0.131 4.131 16 C -0.114 4.114 17 C -0.129 4.129 18 C 0.497 3.503 19 O -0.605 6.605 20 H 0.035 0.965 21 H 0.032 0.968 22 H 0.029 0.971 23 H 0.059 0.941 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.264 0.736 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 10.748 18.778 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.023 3.977 3 C -0.200 4.200 4 C -0.552 4.552 5 H 0.050 0.950 6 C -0.181 4.181 7 N -0.586 5.586 8 Si 0.776 3.224 9 H -0.198 1.198 10 H -0.245 1.245 11 H -0.150 1.150 12 C 0.015 3.985 13 N -0.325 5.325 14 C -0.029 4.029 15 C -0.169 4.169 16 C -0.151 4.151 17 C -0.168 4.168 18 C 0.287 3.713 19 O -0.487 6.487 20 H 0.054 0.946 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.534 10.275 18.381 21.065 hybrid contribution -0.184 -0.045 -1.156 1.171 sum -0.718 10.230 17.226 20.047 Atomic orbital electron populations 1.22073 0.97886 0.99237 0.98349 1.18761 0.92426 0.93574 0.92978 1.22370 1.01111 0.96788 0.99727 1.21101 1.32395 1.11085 0.90572 0.95019 1.25825 0.95359 1.01467 0.95412 1.70116 1.50997 1.38070 0.99379 0.86287 0.79334 0.80649 0.76103 1.19828 1.24516 1.14961 1.21266 0.98090 0.95518 0.83632 1.47475 1.20734 1.36522 1.27798 1.21945 0.93865 0.88689 0.98381 1.21946 0.99905 0.97700 0.97324 1.21651 0.97225 0.98456 0.97769 1.21693 0.99949 1.01248 0.93941 1.20969 0.80847 0.83393 0.86110 1.90702 1.62587 1.32220 1.63181 0.94640 0.94942 0.95218 0.92170 0.95562 0.91131 0.92748 0.93607 0.90394 0.90324 0.89803 0.91429 0.86847 0.87982 0.90783 0.87867 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 6.41 71.98 0.46 -5.20 16 2 C 0.02 1.13 0.57 -52.93 -0.03 1.10 16 3 C -0.14 -5.65 6.39 71.98 0.46 -5.19 16 4 C -0.51 -29.76 8.62 25.60 0.22 -29.54 16 5 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 6 C 0.02 0.98 5.32 84.66 0.45 1.43 16 7 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 8 Si 0.95 45.98 22.80 68.60 1.56 47.55 16 9 H -0.27 -12.42 7.10 99.48 0.71 -11.71 16 10 H -0.32 -15.71 7.11 99.48 0.71 -15.00 16 11 H -0.23 -9.98 4.65 99.48 0.46 -9.52 16 12 C 0.14 5.69 4.45 86.38 0.38 6.08 16 13 N -0.59 -19.06 2.40 -826.27 -1.99 -21.04 16 14 C 0.09 2.00 5.52 86.55 0.48 2.48 16 15 C -0.13 -1.92 6.03 30.74 0.19 -1.73 16 16 C -0.11 -1.58 6.03 30.73 0.19 -1.39 16 17 C -0.13 -2.79 6.03 29.71 0.18 -2.61 16 18 C 0.50 16.78 5.97 87.71 0.52 17.30 16 19 O -0.60 -27.00 14.03 -3.01 -0.04 -27.04 16 20 H 0.03 1.51 6.92 -2.39 -0.02 1.49 16 21 H 0.03 1.59 4.30 -2.39 -0.01 1.58 16 22 H 0.03 1.54 6.94 -2.38 -0.02 1.53 16 23 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 24 H 0.03 1.10 2.26 -2.39 -0.01 1.10 16 25 H 0.07 2.28 5.83 -2.39 -0.01 2.26 16 26 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 27 H 0.05 2.20 7.13 -2.39 -0.02 2.18 16 28 H 0.08 2.97 8.01 -2.39 -0.02 2.95 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.86 5.44 -2.39 -0.01 1.84 16 31 H 0.07 1.09 8.12 -2.38 -0.02 1.07 16 32 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -75.01 261.53 4.15 -70.86 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 0.82 Total: 7.47 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 3.50 Total: -17.28 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -1.69 Total: -81.56 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.04 Total: -27.04 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.56 Total: 47.55 kcal Total: -75.01 4.15 -70.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307401085.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.543 kcal (2) G-P(sol) polarization free energy of solvation -75.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds