Wall clock time and date at job start Mon Mar 30 2020 03:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46568 * 2 1 4 4 C 1.52998 * 109.47383 * 120.00018 * 2 1 3 5 5 H 1.09005 * 109.47121 * 300.00540 * 4 2 1 6 6 N 1.46500 * 109.47297 * 59.99714 * 4 2 1 7 7 C 1.34772 * 120.00720 * 223.90417 * 6 4 2 8 8 O 1.21692 * 119.99873 * 359.97438 * 7 6 4 9 9 C 1.46375 * 120.00325 * 179.72673 * 7 6 4 10 10 H 1.07998 * 119.99976 * 354.16808 * 9 7 6 11 11 C 1.40049 * 120.00190 * 174.16420 * 9 7 6 12 12 N 1.30675 * 119.99595 * 6.15829 * 11 9 7 13 13 Si 1.86790 * 120.00037 * 186.15485 * 11 9 7 14 14 H 1.48510 * 109.47449 * 94.95609 * 13 11 9 15 15 H 1.48508 * 109.47253 * 214.95320 * 13 11 9 16 16 H 1.48494 * 109.47393 * 334.95460 * 13 11 9 17 17 C 1.52997 * 109.47350 * 180.02562 * 4 2 1 18 18 C 1.53782 * 113.61222 * 275.52389 * 17 4 2 19 19 C 1.53954 * 87.01978 * 220.04737 * 18 17 4 20 20 C 1.53780 * 87.11040 * 25.36503 * 19 18 17 21 21 H 1.08997 * 109.47291 * 299.99355 * 1 2 3 22 22 H 1.08996 * 109.47142 * 60.00070 * 1 2 3 23 23 H 1.09004 * 109.46726 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46946 * 240.00243 * 2 1 3 25 25 H 1.09004 * 109.46522 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47332 * 299.99813 * 3 2 1 27 27 H 1.08995 * 109.47289 * 60.00453 * 3 2 1 28 28 H 0.97007 * 119.99552 * 43.90444 * 6 4 2 29 29 H 0.97005 * 119.99570 * 180.02562 * 12 11 9 30 30 H 1.08997 * 112.85118 * 46.72075 * 17 4 2 31 31 H 1.08990 * 113.61494 * 334.56967 * 18 17 4 32 32 H 1.09005 * 113.61203 * 105.47212 * 18 17 4 33 33 H 1.09007 * 113.53713 * 270.81269 * 19 18 17 34 34 H 1.08998 * 113.74275 * 139.94295 * 19 18 17 35 35 H 1.09003 * 113.61604 * 220.09097 * 20 19 18 36 36 H 1.08995 * 113.61511 * 89.19001 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 7 1.5517 -2.1024 1.2493 7 6 1.0627 -2.6444 2.3822 8 8 1.0273 -1.9865 3.4054 9 6 0.5693 -4.0224 2.3808 10 1 0.5091 -4.5735 1.4539 11 6 0.1753 -4.6265 3.5813 12 7 0.1336 -3.9247 4.6828 13 14 -0.2905 -6.4352 3.6080 14 1 0.8912 -7.2451 3.9993 15 1 -1.3846 -6.6502 4.5888 16 1 -0.7484 -6.8484 2.2572 17 6 3.5700 -0.7207 1.2495 18 6 4.1866 -1.8671 0.4307 19 6 5.2328 -1.9983 1.5526 20 6 4.1860 -1.3804 2.4946 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.5804 -2.6270 0.4338 29 1 -0.1389 -4.3431 5.5144 30 1 3.9930 0.2571 1.0190 31 1 3.5354 -2.7361 0.3371 32 1 4.6057 -1.5463 -0.5230 33 1 6.1114 -1.3704 1.4041 34 1 5.4861 -3.0297 1.7979 35 1 4.6046 -0.6671 3.2047 36 1 3.5348 -2.1161 2.9663 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000325327878.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:25 Heat of formation + Delta-G solvation = -38.950324 kcal Electronic energy + Delta-G solvation = -16429.401423 eV Core-core repulsion = 13913.454682 eV Total energy + Delta-G solvation = -2515.946741 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31402 -36.52815 -35.15945 -32.53073 -31.50621 -27.65795 -26.80163 -25.47369 -25.05203 -22.64403 -19.90130 -19.67292 -18.29569 -17.04428 -15.54489 -15.23213 -14.89432 -14.59168 -14.07192 -13.54368 -12.82057 -12.45560 -12.24450 -12.07925 -11.94589 -11.80496 -11.64789 -11.35830 -11.08899 -10.97764 -10.73496 -10.59527 -10.39189 -10.25031 -10.15622 -9.78847 -9.56667 -9.46504 -8.81161 -7.53071 -7.36587 -6.15554 -4.59286 3.15035 3.22666 3.25693 4.13428 4.62490 4.89310 5.06803 5.21430 5.28916 5.35642 5.42385 5.56411 5.62406 5.81947 5.92241 6.01862 6.03589 6.12371 6.19796 6.27052 6.32839 6.39499 6.42570 6.50782 6.54937 6.64229 6.78344 6.80704 6.98026 7.19671 7.47056 8.01006 8.21491 8.40434 9.06927 9.62124 10.64502 10.85262 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028286 B = 0.008907 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.642766 B = 3143.011528 C = 3634.148404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C -0.144 4.144 4 C 0.162 3.838 5 H 0.087 0.913 6 N -0.754 5.754 7 C 0.559 3.441 8 O -0.579 6.579 9 C -0.548 4.548 10 H 0.065 0.935 11 C 0.089 3.911 12 N -0.767 5.767 13 Si 0.903 3.097 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.266 1.266 17 C -0.124 4.124 18 C -0.131 4.131 19 C -0.145 4.145 20 C -0.129 4.129 21 H 0.051 0.949 22 H 0.042 0.958 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.377 0.623 29 H 0.267 0.733 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 4.652 -8.710 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 C -0.202 4.202 4 C 0.055 3.945 5 H 0.105 0.895 6 N -0.408 5.408 7 C 0.363 3.637 8 O -0.462 6.462 9 C -0.585 4.585 10 H 0.083 0.917 11 C -0.130 4.130 12 N -0.396 5.396 13 Si 0.728 3.272 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.190 1.190 17 C -0.144 4.144 18 C -0.169 4.169 19 C -0.182 4.182 20 C -0.167 4.167 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.209 0.791 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.137 5.142 -7.729 10.610 hybrid contribution -0.149 -1.167 -0.387 1.238 sum 4.988 3.976 -8.116 10.322 Atomic orbital electron populations 1.21743 0.95178 1.02381 1.00467 1.21370 0.96059 0.95727 0.98902 1.21860 1.00819 0.96260 1.01258 1.20447 0.91105 0.85565 0.97341 0.89459 1.46109 1.69108 1.12170 1.13369 1.18134 0.76946 0.87442 0.81213 1.90595 1.60357 1.63184 1.32101 1.20896 1.45877 0.97430 0.94300 0.91663 1.25670 0.93323 0.98854 0.95195 1.70030 1.34484 1.35745 0.99361 0.86434 0.78543 0.83494 0.78714 1.19899 1.20542 1.18978 1.23044 0.96619 0.97401 0.97294 1.22899 0.98060 0.99855 0.96064 1.22812 0.96725 1.00533 0.98138 1.22891 0.97633 1.00360 0.95771 0.92982 0.93921 0.91948 0.91820 0.92615 0.93305 0.92746 0.79093 0.92264 0.89884 0.89360 0.92932 0.91431 0.92127 0.92957 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.04 37.16 0.34 -1.90 16 2 C -0.10 -1.54 2.67 -90.62 -0.24 -1.78 16 3 C -0.14 -1.87 8.90 37.16 0.33 -1.54 16 4 C 0.16 3.03 1.84 -67.93 -0.13 2.91 16 5 H 0.09 1.96 7.06 -51.93 -0.37 1.59 16 6 N -0.75 -16.10 2.89 -55.22 -0.16 -16.26 16 7 C 0.56 15.29 6.67 -12.99 -0.09 15.20 16 8 O -0.58 -18.12 14.02 5.20 0.07 -18.05 16 9 C -0.55 -15.25 9.53 -35.63 -0.34 -15.59 16 10 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 11 C 0.09 2.47 5.49 -17.37 -0.10 2.38 16 12 N -0.77 -22.87 11.85 55.55 0.66 -22.21 16 13 Si 0.90 20.21 29.56 -169.99 -5.03 15.18 16 14 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 C -0.12 -2.06 3.38 -89.81 -0.30 -2.37 16 18 C -0.13 -2.03 7.47 -25.83 -0.19 -2.23 16 19 C -0.14 -2.26 8.09 -25.83 -0.21 -2.47 16 20 C -0.13 -2.42 7.54 -25.92 -0.20 -2.61 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 1.10 7.60 -51.93 -0.39 0.70 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.67 6.22 -51.93 -0.32 0.35 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.38 7.32 7.79 -40.82 -0.32 7.00 16 29 H 0.27 7.25 8.29 -40.82 -0.34 6.92 16 30 H 0.08 1.23 6.11 -51.93 -0.32 0.91 16 31 H 0.09 1.49 6.26 -51.93 -0.32 1.16 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.10 2.29 6.37 -51.93 -0.33 1.96 16 LS Contribution 287.12 15.07 4.33 4.33 Total: -1.00 -31.53 287.12 -6.98 -38.51 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.73 Total: 8.49 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.12 Total: -9.99 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.50 Total: -38.48 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: 0.07 Total: -18.05 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.53 -6.98 -38.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325327878.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.440 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds