Wall clock time and date at job start Mon Mar 30 2020 03:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46568 * 2 1 4 4 C 1.52998 * 109.47383 * 120.00018 * 2 1 3 5 5 H 1.09005 * 109.47121 * 300.00540 * 4 2 1 6 6 N 1.46500 * 109.47297 * 59.99714 * 4 2 1 7 7 C 1.34772 * 120.00720 * 223.90417 * 6 4 2 8 8 O 1.21692 * 119.99873 * 359.97438 * 7 6 4 9 9 C 1.46375 * 120.00325 * 179.72673 * 7 6 4 10 10 H 1.07998 * 119.99976 * 354.16808 * 9 7 6 11 11 C 1.40049 * 120.00190 * 174.16420 * 9 7 6 12 12 N 1.30675 * 119.99595 * 6.15829 * 11 9 7 13 13 Si 1.86790 * 120.00037 * 186.15485 * 11 9 7 14 14 H 1.48510 * 109.47449 * 94.95609 * 13 11 9 15 15 H 1.48508 * 109.47253 * 214.95320 * 13 11 9 16 16 H 1.48494 * 109.47393 * 334.95460 * 13 11 9 17 17 C 1.52997 * 109.47350 * 180.02562 * 4 2 1 18 18 C 1.53782 * 113.61222 * 275.52389 * 17 4 2 19 19 C 1.53954 * 87.01978 * 220.04737 * 18 17 4 20 20 C 1.53780 * 87.11040 * 25.36503 * 19 18 17 21 21 H 1.08997 * 109.47291 * 299.99355 * 1 2 3 22 22 H 1.08996 * 109.47142 * 60.00070 * 1 2 3 23 23 H 1.09004 * 109.46726 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46946 * 240.00243 * 2 1 3 25 25 H 1.09004 * 109.46522 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.47332 * 299.99813 * 3 2 1 27 27 H 1.08995 * 109.47289 * 60.00453 * 3 2 1 28 28 H 0.97007 * 119.99552 * 43.90444 * 6 4 2 29 29 H 0.97005 * 119.99570 * 180.02562 * 12 11 9 30 30 H 1.08997 * 112.85118 * 46.72075 * 17 4 2 31 31 H 1.08990 * 113.61494 * 334.56967 * 18 17 4 32 32 H 1.09005 * 113.61203 * 105.47212 * 18 17 4 33 33 H 1.09007 * 113.53713 * 270.81269 * 19 18 17 34 34 H 1.08998 * 113.74275 * 139.94295 * 19 18 17 35 35 H 1.09003 * 113.61604 * 220.09097 * 20 19 18 36 36 H 1.08995 * 113.61511 * 89.19001 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 7 1.5517 -2.1024 1.2493 7 6 1.0627 -2.6444 2.3822 8 8 1.0273 -1.9865 3.4054 9 6 0.5693 -4.0224 2.3808 10 1 0.5091 -4.5735 1.4539 11 6 0.1753 -4.6265 3.5813 12 7 0.1336 -3.9247 4.6828 13 14 -0.2905 -6.4352 3.6080 14 1 0.8912 -7.2451 3.9993 15 1 -1.3846 -6.6502 4.5888 16 1 -0.7484 -6.8484 2.2572 17 6 3.5700 -0.7207 1.2495 18 6 4.1866 -1.8671 0.4307 19 6 5.2328 -1.9983 1.5526 20 6 4.1860 -1.3804 2.4946 21 1 -0.3634 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.5804 -2.6270 0.4338 29 1 -0.1389 -4.3431 5.5144 30 1 3.9930 0.2571 1.0190 31 1 3.5354 -2.7361 0.3371 32 1 4.6057 -1.5463 -0.5230 33 1 6.1114 -1.3704 1.4041 34 1 5.4861 -3.0297 1.7979 35 1 4.6046 -0.6671 3.2047 36 1 3.5348 -2.1161 2.9663 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000325327878.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:25 Heat of formation + Delta-G solvation = -59.055020 kcal Electronic energy + Delta-G solvation = -16430.273229 eV Core-core repulsion = 13913.454682 eV Total energy + Delta-G solvation = -2516.818546 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84480 -38.43068 -36.59378 -34.62433 -33.35900 -29.29271 -28.28835 -27.13881 -26.44505 -24.06145 -21.78893 -21.09265 -19.79403 -18.98443 -17.43139 -16.83860 -16.48659 -15.99612 -15.80277 -14.92338 -14.60531 -14.14988 -13.75977 -13.62343 -13.49700 -13.14100 -13.00246 -12.91587 -12.80267 -12.61417 -12.54743 -12.06597 -11.97257 -11.82340 -11.52099 -11.16425 -11.02657 -10.88760 -10.84091 -9.73263 -9.23483 -8.25822 -6.79582 1.38277 1.39299 1.54423 2.24816 2.53527 3.24213 3.66906 3.70849 3.91636 3.93010 4.06621 4.18641 4.25702 4.36597 4.66965 4.76772 4.83990 4.90200 4.91361 4.97397 5.02214 5.10929 5.13025 5.15780 5.19611 5.26152 5.34690 5.46485 5.51752 5.57594 5.78135 5.96365 6.31403 6.47765 6.91573 7.67250 8.57451 8.76293 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028286 B = 0.008907 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.642766 B = 3143.011528 C = 3634.148404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.140 4.140 4 C 0.160 3.840 5 H 0.040 0.960 6 N -0.738 5.738 7 C 0.549 3.451 8 O -0.629 6.629 9 C -0.577 4.577 10 H 0.082 0.918 11 C 0.030 3.970 12 N -0.822 5.822 13 Si 0.991 3.009 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.249 1.249 17 C -0.116 4.116 18 C -0.122 4.122 19 C -0.131 4.131 20 C -0.148 4.148 21 H 0.028 0.972 22 H 0.074 0.926 23 H 0.038 0.962 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.390 0.610 29 H 0.271 0.729 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.349 4.394 -11.497 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.197 4.197 4 C 0.054 3.946 5 H 0.058 0.942 6 N -0.391 5.391 7 C 0.353 3.647 8 O -0.516 6.516 9 C -0.614 4.614 10 H 0.100 0.900 11 C -0.184 4.184 12 N -0.452 5.452 13 Si 0.811 3.189 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.172 1.172 17 C -0.135 4.135 18 C -0.160 4.160 19 C -0.168 4.168 20 C -0.185 4.185 21 H 0.047 0.953 22 H 0.093 0.907 23 H 0.057 0.943 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.223 0.777 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.278 4.900 -10.578 13.241 hybrid contribution -0.488 -1.004 0.480 1.215 sum 5.790 3.896 -10.098 12.275 Atomic orbital electron populations 1.21734 0.96029 1.00962 1.00907 1.21330 0.95305 0.97227 0.97349 1.21832 1.01760 0.94198 1.01938 1.20591 0.92869 0.83647 0.97473 0.94151 1.45732 1.67796 1.13446 1.12103 1.18368 0.76852 0.87630 0.81882 1.90551 1.62381 1.64358 1.34349 1.21426 1.46398 0.98136 0.95432 0.90034 1.26880 0.92562 1.04629 0.94361 1.70204 1.35952 1.38608 1.00399 0.85111 0.78393 0.75941 0.79484 1.19002 1.19896 1.17240 1.23066 0.94682 0.99417 0.96352 1.22822 0.97354 0.98298 0.97495 1.22807 0.97018 1.00522 0.96476 1.22838 0.98726 0.99902 0.97069 0.95260 0.90710 0.94301 0.89575 0.91050 0.90796 0.93960 0.77664 0.91886 0.86761 0.91240 0.89260 0.88160 0.92781 0.92834 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.04 71.98 0.65 -3.68 16 2 C -0.09 -2.65 2.67 -10.79 -0.03 -2.68 16 3 C -0.14 -3.18 8.90 71.98 0.64 -2.54 16 4 C 0.16 6.05 1.84 44.99 0.08 6.13 16 5 H 0.04 1.92 7.06 -2.38 -0.02 1.90 16 6 N -0.74 -32.41 2.89 -446.83 -1.29 -33.71 16 7 C 0.55 31.58 6.67 86.36 0.58 32.16 16 8 O -0.63 -42.09 14.02 -4.32 -0.06 -42.15 16 9 C -0.58 -33.03 9.53 24.83 0.24 -32.80 16 10 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 11 C 0.03 1.73 5.49 85.30 0.47 2.20 16 12 N -0.82 -51.20 11.85 21.84 0.26 -50.94 16 13 Si 0.99 41.96 29.56 68.60 2.03 43.99 16 14 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 16 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 17 C -0.12 -3.70 3.38 -10.27 -0.03 -3.73 16 18 C -0.12 -3.45 7.47 31.18 0.23 -3.22 16 19 C -0.13 -3.84 8.09 31.18 0.25 -3.58 16 20 C -0.15 -5.63 7.54 31.12 0.23 -5.39 16 21 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.04 1.37 7.60 -2.38 -0.02 1.35 16 24 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.07 1.41 6.22 -2.38 -0.01 1.40 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.39 15.14 7.79 -92.70 -0.72 14.41 16 29 H 0.27 15.40 8.29 -92.70 -0.77 14.63 16 30 H 0.11 2.99 6.11 -2.39 -0.01 2.97 16 31 H 0.07 2.23 6.26 -2.39 -0.01 2.22 16 32 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 2.04 6.37 -2.39 -0.02 2.03 16 Total: -1.00 -74.04 287.12 4.58 -69.45 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.34 Total: 30.50 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 3.31 Total: -17.14 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -1.03 Total: -84.65 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.06 Total: -42.15 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -74.04 4.58 -69.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000325327878.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.399 kcal (2) G-P(sol) polarization free energy of solvation -74.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds