Wall clock time and date at job start Mon Mar 30 2020 03:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47082 * 2 1 4 4 C 1.53002 * 109.47364 * 120.00304 * 2 1 3 5 5 C 1.52998 * 109.46957 * 175.00186 * 4 2 1 6 6 H 1.09003 * 115.55577 * 330.58194 * 5 4 2 7 7 C 1.53008 * 117.51910 * 116.28430 * 5 4 2 8 8 C 1.53003 * 117.49649 * 184.91311 * 5 4 2 9 9 H 1.08996 * 117.50102 * 144.99896 * 8 5 4 10 10 C 1.50700 * 117.50052 * 359.97438 * 8 5 4 11 11 O 1.21290 * 119.99557 * 0.02562 * 10 8 5 12 12 N 1.34769 * 120.00203 * 180.02562 * 10 8 5 13 13 C 1.46498 * 119.99935 * 359.97438 * 12 10 8 14 14 C 1.37098 * 119.99806 * 180.02562 * 12 10 8 15 15 H 1.07998 * 120.00339 * 25.14451 * 14 12 10 16 16 C 1.38961 * 119.99711 * 205.14472 * 14 12 10 17 17 N 1.31410 * 119.99990 * 11.75020 * 16 14 12 18 18 Si 1.86795 * 119.99864 * 191.74971 * 16 14 12 19 19 H 1.48496 * 109.47443 * 59.99863 * 18 16 14 20 20 H 1.48501 * 109.46840 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46864 * 299.99779 * 18 16 14 22 22 H 1.08992 * 109.47176 * 299.99456 * 1 2 3 23 23 H 1.08999 * 109.47108 * 60.00039 * 1 2 3 24 24 H 1.09008 * 109.46661 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47539 * 240.00481 * 2 1 3 26 26 H 1.08999 * 109.47214 * 300.00737 * 3 2 1 27 27 H 1.09005 * 109.46540 * 59.99870 * 3 2 1 28 28 H 1.09001 * 109.47233 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.46934 * 55.00399 * 4 2 1 30 30 H 1.08999 * 109.46659 * 295.00354 * 4 2 1 31 31 H 1.08993 * 117.49738 * 214.96866 * 7 5 4 32 32 H 1.09004 * 117.49298 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.46915 * 85.05957 * 13 12 10 34 34 H 1.09003 * 109.47010 * 205.06001 * 13 12 10 35 35 H 1.09000 * 109.47517 * 325.05994 * 13 12 10 36 36 H 0.96996 * 119.99946 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1878 6 1 3.9927 -0.8818 0.1866 7 6 4.3701 -0.0996 2.2639 8 6 4.2610 -1.6255 2.2947 9 1 5.1468 -2.1990 2.0217 10 6 3.3924 -2.2396 3.3622 11 8 2.1889 -2.0949 3.3221 12 7 3.9530 -2.9494 4.3613 13 6 5.4066 -3.1245 4.4093 14 6 3.1626 -3.5085 5.3321 15 1 2.1306 -3.7443 5.1187 16 6 3.6896 -3.7716 6.5907 17 7 4.8614 -3.2817 6.9279 18 14 2.7323 -4.8218 7.8031 19 1 2.5057 -6.1687 7.2202 20 1 3.5057 -4.9513 9.0642 21 1 1.4242 -4.1797 8.0889 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6055 -1.7198 1.2950 30 1 1.7516 -0.1584 2.1369 31 1 5.3276 0.3306 1.9704 32 1 3.8135 0.4602 3.0155 33 1 5.8597 -2.2667 4.9063 34 1 5.6451 -4.0328 4.9629 35 1 5.7968 -3.2045 3.3947 36 1 5.2290 -3.4650 7.8066 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387657670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:38 Heat of formation + Delta-G solvation = -38.386544 kcal Electronic energy + Delta-G solvation = -15941.466215 eV Core-core repulsion = 13425.543922 eV Total energy + Delta-G solvation = -2515.922294 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83473 -38.35793 -36.50468 -35.70951 -33.57813 -28.68022 -28.13760 -27.90882 -26.65523 -24.30835 -22.11068 -20.94865 -19.92769 -18.86006 -17.99754 -16.59778 -16.23011 -15.97740 -15.61194 -15.35144 -14.77813 -14.46634 -13.99037 -13.60683 -13.38307 -13.23599 -13.18792 -13.06243 -12.83447 -12.64958 -12.38158 -12.29751 -12.15366 -11.86329 -11.65849 -11.49862 -11.02408 -10.84580 -10.71122 -10.02270 -9.61266 -8.33352 -5.98768 1.37664 1.38745 1.49811 1.96787 2.27164 2.89901 3.06965 3.24311 3.71606 4.02669 4.08619 4.18909 4.22134 4.32229 4.36846 4.65536 4.73271 4.85560 4.87444 4.90518 4.95211 4.98815 5.05787 5.14119 5.18169 5.29127 5.35733 5.37238 5.43584 5.50933 5.58999 5.75259 6.12649 6.52094 7.19216 7.51167 8.10318 8.69874 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041478 B = 0.006644 C = 0.005979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.892202 B = 4213.618128 C = 4681.791633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.140 4.140 4 C -0.063 4.063 5 C -0.107 4.107 6 H 0.138 0.862 7 C -0.140 4.140 8 C -0.195 4.195 9 H 0.133 0.867 10 C 0.465 3.535 11 O -0.620 6.620 12 N -0.466 5.466 13 C 0.126 3.874 14 C -0.344 4.344 15 H 0.068 0.932 16 C -0.004 4.004 17 N -0.899 5.899 18 Si 0.989 3.011 19 H -0.266 1.266 20 H -0.269 1.269 21 H -0.278 1.278 22 H 0.040 0.960 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.039 0.961 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.033 0.967 31 H 0.132 0.868 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 5.430 -11.529 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.197 4.197 4 C -0.101 4.101 5 C -0.125 4.125 6 H 0.156 0.844 7 C -0.178 4.178 8 C -0.216 4.216 9 H 0.151 0.849 10 C 0.255 3.745 11 O -0.507 6.507 12 N -0.185 5.185 13 C -0.017 4.017 14 C -0.472 4.472 15 H 0.086 0.914 16 C -0.206 4.206 17 N -0.538 5.538 18 Si 0.813 3.187 19 H -0.191 1.191 20 H -0.193 1.193 21 H -0.204 1.204 22 H 0.060 0.940 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.150 0.850 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.929 5.469 -11.339 12.624 hybrid contribution -0.413 -0.687 1.267 1.499 sum 0.517 4.782 -10.072 11.162 Atomic orbital electron populations 1.21815 0.95598 1.01209 1.01652 1.21209 0.95587 0.97020 0.97460 1.21802 1.01601 0.94964 1.01346 1.21058 0.92834 0.99460 0.96736 1.22469 0.94667 1.00899 0.94481 0.84413 1.23034 1.02964 0.90640 1.01156 1.22264 1.02539 0.96505 1.00251 0.84890 1.20240 0.88269 0.80974 0.85029 1.90469 1.16922 1.64384 1.78966 1.43797 1.07252 1.45063 1.22344 1.21374 0.79883 1.01578 0.98873 1.19554 0.96090 1.39427 0.92162 0.91373 1.26106 0.97695 0.98338 0.98425 1.70058 1.18835 1.42962 1.21929 0.85065 0.77862 0.78577 0.77220 1.19135 1.19323 1.20379 0.94033 0.90901 0.93760 0.90187 0.91514 0.94145 0.91771 0.93857 0.94820 0.84979 0.91196 0.94270 0.92671 0.91672 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.19 71.98 0.66 -2.98 16 2 C -0.09 -2.41 2.88 -10.79 -0.03 -2.44 16 3 C -0.14 -3.04 9.01 71.98 0.65 -2.39 16 4 C -0.06 -2.21 3.22 30.59 0.10 -2.11 16 5 C -0.11 -3.27 4.72 -10.79 -0.05 -3.32 16 6 H 0.14 3.20 8.08 -2.39 -0.02 3.18 16 7 C -0.14 -4.35 9.88 30.60 0.30 -4.05 16 8 C -0.19 -7.21 5.30 -11.54 -0.06 -7.27 16 9 H 0.13 4.22 6.51 -2.39 -0.02 4.20 16 10 C 0.46 23.66 7.39 87.66 0.65 24.31 16 11 O -0.62 -35.61 12.83 -3.06 -0.04 -35.65 16 12 N -0.47 -25.17 3.01 -658.89 -1.98 -27.15 16 13 C 0.13 5.80 8.45 127.77 1.08 6.88 16 14 C -0.34 -20.35 9.23 84.04 0.78 -19.57 16 15 H 0.07 4.28 7.46 -2.91 -0.02 4.26 16 16 C 0.00 -0.23 5.06 84.93 0.43 0.19 16 17 N -0.90 -49.29 10.84 21.67 0.23 -49.06 16 18 Si 0.99 43.76 29.57 68.60 2.03 45.79 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.06 1.29 7.38 -2.39 -0.02 1.27 16 29 H 0.04 1.81 6.93 -2.39 -0.02 1.79 16 30 H 0.03 1.38 7.29 -2.39 -0.02 1.36 16 31 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 32 H 0.07 2.52 8.03 -2.38 -0.02 2.50 16 33 H 0.04 1.85 7.86 -2.38 -0.02 1.83 16 34 H 0.05 2.68 6.78 -2.39 -0.02 2.67 16 35 H 0.06 2.41 6.22 -2.39 -0.01 2.39 16 36 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -68.23 289.73 5.78 -62.45 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 1.04 Total: 16.36 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 4.50 Total: -12.76 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -1.75 Total: -76.20 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.04 Total: -35.65 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -68.23 5.78 -62.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387657670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.067 kcal (2) G-P(sol) polarization free energy of solvation -68.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds