Wall clock time and date at job start Mon Mar 30 2020 03:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47443 * 2 1 4 4 C 1.53002 * 109.46852 * 120.00200 * 2 1 3 5 5 C 1.52995 * 109.47543 * 64.99577 * 4 2 1 6 6 H 1.09002 * 115.56325 * 330.69161 * 5 4 2 7 7 C 1.52996 * 117.50088 * 116.37705 * 5 4 2 8 8 C 1.52995 * 117.50273 * 185.00292 * 5 4 2 9 9 H 1.08997 * 117.50764 * 144.99736 * 8 5 4 10 10 C 1.50709 * 117.49743 * 359.97438 * 8 5 4 11 11 O 1.21281 * 119.99753 * 0.02562 * 10 8 5 12 12 N 1.34778 * 120.00069 * 180.02562 * 10 8 5 13 13 C 1.46493 * 119.99700 * 180.02562 * 12 10 8 14 14 C 1.50706 * 109.47128 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 H 1.09001 * 109.47477 * 300.00611 * 1 2 3 23 23 H 1.09001 * 109.47053 * 60.00310 * 1 2 3 24 24 H 1.08999 * 109.47603 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46753 * 239.99213 * 2 1 3 26 26 H 1.09000 * 109.47075 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46743 * 299.99880 * 3 2 1 28 28 H 1.08994 * 109.47462 * 59.99598 * 3 2 1 29 29 H 1.09007 * 109.47118 * 304.99365 * 4 2 1 30 30 H 1.08996 * 109.47293 * 184.99780 * 4 2 1 31 31 H 1.09001 * 117.49833 * 0.02562 * 7 5 4 32 32 H 1.08994 * 117.50203 * 214.98133 * 7 5 4 33 33 H 0.96998 * 120.00160 * 359.97438 * 12 10 8 34 34 H 1.09001 * 109.47786 * 60.00101 * 13 12 10 35 35 H 1.09006 * 109.47401 * 299.99686 * 13 12 10 36 36 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1881 6 1 0.7160 -2.4086 0.6422 7 6 2.7566 -3.2336 1.1155 8 6 1.9515 -3.0661 2.4057 9 1 1.2404 -3.8517 2.6612 10 6 2.6386 -2.4062 3.5734 11 8 2.9190 -1.2272 3.5247 12 7 2.9414 -3.1261 4.6719 13 6 3.6087 -2.4843 5.8071 14 6 3.8319 -3.4997 6.8981 15 1 3.5085 -4.5209 6.7598 16 6 4.4489 -3.1252 8.0728 17 7 4.8423 -1.8816 8.2415 18 14 4.7249 -4.3837 9.4253 19 1 3.5521 -4.3969 10.3362 20 1 4.8980 -5.7293 8.8216 21 1 5.9442 -4.0253 10.1936 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5140 -0.8899 26 1 3.1300 1.4423 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6053 -0.2617 2.1370 30 1 3.1262 -0.6445 1.2952 31 1 3.7829 -2.8664 1.1118 32 1 2.5754 -4.1296 0.5219 33 1 2.7167 -4.0688 4.7110 34 1 2.9839 -1.6757 6.1863 35 1 4.5685 -2.0810 5.4839 36 1 4.6986 -1.2280 7.5393 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387724685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:47 Heat of formation + Delta-G solvation = -46.244604 kcal Electronic energy + Delta-G solvation = -15390.897680 eV Core-core repulsion = 12874.634635 eV Total energy + Delta-G solvation = -2516.263045 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.62566 -37.07981 -34.93826 -34.30011 -32.38593 -27.71605 -27.15648 -26.68357 -23.90930 -22.17694 -21.21191 -19.79045 -19.40221 -17.26234 -16.46009 -15.15670 -15.12410 -14.52253 -14.26918 -13.81949 -13.57900 -13.36109 -12.72584 -12.55211 -12.27920 -12.20850 -12.02123 -11.85700 -11.57914 -11.04654 -10.90107 -10.78471 -10.75492 -10.55505 -10.17853 -9.92924 -9.79561 -8.95317 -8.75229 -8.67086 -7.97527 -6.51921 -4.25285 3.09437 3.37246 3.40848 3.56455 3.92003 4.12522 4.45409 4.65701 4.97276 5.02133 5.06761 5.18916 5.24899 5.27315 5.43406 5.54504 5.64189 5.77744 5.79477 5.85071 5.94804 6.03844 6.10541 6.14190 6.21961 6.33562 6.53775 6.79230 7.00556 7.22303 7.35344 7.67133 8.27165 8.49274 8.72394 9.02533 9.48757 10.88319 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.051000 B = 0.004951 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.892603 B = 5654.088127 C = 5989.412209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.118 4.118 6 H 0.108 0.892 7 C -0.155 4.155 8 C -0.189 4.189 9 H 0.117 0.883 10 C 0.526 3.474 11 O -0.552 6.552 12 N -0.705 5.705 13 C 0.240 3.760 14 C -0.623 4.623 15 H 0.057 0.943 16 C 0.022 3.978 17 N -0.903 5.903 18 Si 1.079 2.921 19 H -0.286 1.286 20 H -0.288 1.288 21 H -0.282 1.282 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.393 0.607 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.199 -1.334 -15.449 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.136 4.136 6 H 0.126 0.874 7 C -0.193 4.193 8 C -0.211 4.211 9 H 0.135 0.865 10 C 0.311 3.689 11 O -0.432 6.432 12 N -0.352 5.352 13 C 0.119 3.881 14 C -0.661 4.661 15 H 0.075 0.925 16 C -0.183 4.183 17 N -0.537 5.537 18 Si 0.906 3.094 19 H -0.213 1.213 20 H -0.214 1.214 21 H -0.208 1.208 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.225 0.775 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.346 -0.673 -13.911 15.305 hybrid contribution -0.809 -0.440 -1.439 1.709 sum -7.154 -1.113 -15.351 16.973 Atomic orbital electron populations 1.21888 0.95743 1.01469 1.01326 1.21187 0.95522 0.96188 0.98873 1.21805 1.01039 0.96129 1.01316 1.21269 1.01470 0.91317 0.97024 1.22434 0.99257 0.93551 0.98378 0.87362 1.23030 0.97385 1.01230 0.97622 1.22355 1.04623 1.04234 0.89866 0.86540 1.19617 0.79272 0.86779 0.83205 1.90638 1.55069 1.15797 1.81665 1.46252 1.59252 1.13118 1.16612 1.19156 0.91853 0.94136 0.82989 1.22102 1.44799 0.96802 1.02436 0.92464 1.25882 0.93170 0.99812 0.99473 1.70732 1.43461 1.02806 1.36747 0.83409 0.77001 0.73979 0.75009 1.21264 1.21362 1.20773 0.92695 0.93312 0.92726 0.91734 0.92761 0.93229 0.92624 0.90123 0.91290 0.88445 0.88345 0.77467 0.96602 0.96618 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.01 37.16 0.33 -1.18 16 2 C -0.10 -1.15 2.92 -90.62 -0.26 -1.41 16 3 C -0.15 -1.64 9.19 37.15 0.34 -1.29 16 4 C -0.07 -1.07 3.22 -26.73 -0.09 -1.16 16 5 C -0.12 -1.54 5.52 -90.63 -0.50 -2.04 16 6 H 0.11 1.19 6.38 -51.93 -0.33 0.85 16 7 C -0.16 -1.97 9.88 -26.73 -0.26 -2.24 16 8 C -0.19 -2.82 6.19 -91.77 -0.57 -3.39 16 9 H 0.12 1.48 8.14 -51.93 -0.42 1.05 16 10 C 0.53 10.67 7.59 -10.98 -0.08 10.59 16 11 O -0.55 -12.90 13.10 5.56 0.07 -12.82 16 12 N -0.70 -15.35 5.55 -61.47 -0.34 -15.70 16 13 C 0.24 6.44 4.74 -5.19 -0.02 6.42 16 14 C -0.62 -17.38 9.28 -34.44 -0.32 -17.70 16 15 H 0.06 1.52 7.60 -52.48 -0.40 1.12 16 16 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 17 N -0.90 -27.57 13.65 55.43 0.76 -26.82 16 18 Si 1.08 24.64 29.90 -169.99 -5.08 19.56 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.53 6.41 -51.93 -0.33 0.19 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.39 6.92 -51.93 -0.36 1.03 16 30 H 0.07 1.14 7.29 -51.93 -0.38 0.76 16 31 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.39 7.52 8.32 -40.82 -0.34 7.18 16 34 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 35 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 36 H 0.27 8.44 7.22 -40.82 -0.29 8.14 16 LS Contribution 295.86 15.07 4.46 4.46 Total: -1.00 -31.47 295.86 -7.53 -39.00 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.86 Total: 5.19 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.53 Total: -12.87 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.42 Total: -42.51 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.82 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.47 -7.53 -39.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387724685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.243 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds