Wall clock time and date at job start Mon Mar 30 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47443 * 2 1 4 4 C 1.53002 * 109.46852 * 120.00200 * 2 1 3 5 5 C 1.52995 * 109.47543 * 64.99577 * 4 2 1 6 6 H 1.09002 * 115.56325 * 330.69161 * 5 4 2 7 7 C 1.52996 * 117.50088 * 116.37705 * 5 4 2 8 8 C 1.52995 * 117.50273 * 185.00292 * 5 4 2 9 9 H 1.08997 * 117.50764 * 144.99736 * 8 5 4 10 10 C 1.50709 * 117.49743 * 359.97438 * 8 5 4 11 11 O 1.21281 * 119.99753 * 0.02562 * 10 8 5 12 12 N 1.34778 * 120.00069 * 180.02562 * 10 8 5 13 13 C 1.46493 * 119.99700 * 180.02562 * 12 10 8 14 14 C 1.50706 * 109.47128 * 179.97438 * 13 12 10 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 H 1.09001 * 109.47477 * 300.00611 * 1 2 3 23 23 H 1.09001 * 109.47053 * 60.00310 * 1 2 3 24 24 H 1.08999 * 109.47603 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46753 * 239.99213 * 2 1 3 26 26 H 1.09000 * 109.47075 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46743 * 299.99880 * 3 2 1 28 28 H 1.08994 * 109.47462 * 59.99598 * 3 2 1 29 29 H 1.09007 * 109.47118 * 304.99365 * 4 2 1 30 30 H 1.08996 * 109.47293 * 184.99780 * 4 2 1 31 31 H 1.09001 * 117.49833 * 0.02562 * 7 5 4 32 32 H 1.08994 * 117.50203 * 214.98133 * 7 5 4 33 33 H 0.96998 * 120.00160 * 359.97438 * 12 10 8 34 34 H 1.09001 * 109.47786 * 60.00101 * 13 12 10 35 35 H 1.09006 * 109.47401 * 299.99686 * 13 12 10 36 36 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1881 6 1 0.7160 -2.4086 0.6422 7 6 2.7566 -3.2336 1.1155 8 6 1.9515 -3.0661 2.4057 9 1 1.2404 -3.8517 2.6612 10 6 2.6386 -2.4062 3.5734 11 8 2.9190 -1.2272 3.5247 12 7 2.9414 -3.1261 4.6719 13 6 3.6087 -2.4843 5.8071 14 6 3.8319 -3.4997 6.8981 15 1 3.5085 -4.5209 6.7598 16 6 4.4489 -3.1252 8.0728 17 7 4.8423 -1.8816 8.2415 18 14 4.7249 -4.3837 9.4253 19 1 3.5521 -4.3969 10.3362 20 1 4.8980 -5.7293 8.8216 21 1 5.9442 -4.0253 10.1936 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5140 -0.8899 26 1 3.1300 1.4423 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6053 -0.2617 2.1370 30 1 3.1262 -0.6445 1.2952 31 1 3.7829 -2.8664 1.1118 32 1 2.5754 -4.1296 0.5219 33 1 2.7167 -4.0688 4.7110 34 1 2.9839 -1.6757 6.1863 35 1 4.5685 -2.0810 5.4839 36 1 4.6986 -1.2280 7.5393 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387724685.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:46 Heat of formation + Delta-G solvation = -66.643043 kcal Electronic energy + Delta-G solvation = -15391.782222 eV Core-core repulsion = 12874.634635 eV Total energy + Delta-G solvation = -2517.147587 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.12380 -38.41355 -36.40629 -35.89350 -34.43878 -29.40706 -28.23345 -27.94802 -25.70019 -23.92776 -22.34704 -21.08158 -20.79940 -19.19719 -17.97999 -16.71258 -16.51109 -15.95465 -15.70686 -15.58380 -14.97585 -14.57690 -14.42348 -14.04853 -13.92530 -13.65474 -13.22998 -13.12649 -12.93014 -12.58062 -12.53301 -11.95963 -11.90203 -11.71664 -11.52458 -11.04246 -10.98706 -10.96365 -10.78293 -10.47059 -9.95666 -8.83113 -6.58629 1.54058 1.55944 1.63939 1.81173 2.35328 2.56405 2.86231 3.05562 3.56496 3.83704 3.92849 4.08391 4.12111 4.19919 4.35127 4.46123 4.71719 4.78184 4.83059 4.84622 4.90962 4.93370 4.95220 5.05483 5.08690 5.15662 5.27858 5.38497 5.44285 5.52275 5.54472 5.65032 6.05288 6.27945 6.80266 7.22125 7.41263 8.56169 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.051000 B = 0.004951 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.892603 B = 5654.088127 C = 5989.412209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.071 4.071 5 C -0.111 4.111 6 H 0.144 0.856 7 C -0.135 4.135 8 C -0.201 4.201 9 H 0.150 0.850 10 C 0.518 3.482 11 O -0.591 6.591 12 N -0.704 5.704 13 C 0.254 3.746 14 C -0.631 4.631 15 H 0.075 0.925 16 C -0.033 4.033 17 N -0.930 5.930 18 Si 1.133 2.867 19 H -0.270 1.270 20 H -0.260 1.260 21 H -0.284 1.284 22 H 0.040 0.960 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.141 0.859 33 H 0.408 0.592 34 H -0.019 1.019 35 H -0.019 1.019 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.574 -3.944 -17.040 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.109 4.109 5 C -0.129 4.129 6 H 0.162 0.838 7 C -0.173 4.173 8 C -0.222 4.222 9 H 0.168 0.832 10 C 0.306 3.694 11 O -0.473 6.473 12 N -0.353 5.353 13 C 0.131 3.869 14 C -0.668 4.668 15 H 0.094 0.906 16 C -0.231 4.231 17 N -0.565 5.565 18 Si 0.952 3.048 19 H -0.195 1.195 20 H -0.184 1.184 21 H -0.210 1.210 22 H 0.059 0.941 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.243 0.757 34 H -0.001 1.001 35 H -0.001 1.001 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.750 -3.304 -15.552 17.688 hybrid contribution -0.369 0.462 -1.010 1.170 sum -8.119 -2.842 -16.562 18.663 Atomic orbital electron populations 1.21869 0.94312 1.02404 1.01571 1.21160 0.96640 0.95784 0.97647 1.21833 1.00535 0.96456 1.01677 1.21138 0.99315 0.93168 0.97229 1.22608 1.00976 0.92218 0.97145 0.83820 1.23173 0.96179 1.02327 0.95593 1.22339 1.06002 1.05708 0.88130 0.83247 1.20690 0.78367 0.86405 0.83942 1.90635 1.56395 1.17854 1.82424 1.46063 1.59422 1.13879 1.15950 1.18647 0.89987 0.93554 0.84746 1.22465 1.44231 0.97579 1.02534 0.90638 1.27696 0.92171 1.00683 1.02542 1.70883 1.45507 1.03827 1.36333 0.82754 0.77298 0.72436 0.72288 1.19523 1.18422 1.20964 0.94083 0.91463 0.91435 0.89968 0.93660 0.90982 0.94109 0.93795 0.94405 0.90328 0.84145 0.75660 1.00110 1.00127 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.01 71.98 0.65 -1.99 16 2 C -0.09 -2.04 2.92 -10.79 -0.03 -2.07 16 3 C -0.15 -3.29 9.19 71.98 0.66 -2.63 16 4 C -0.07 -2.09 3.22 30.59 0.10 -1.99 16 5 C -0.11 -2.65 5.52 -10.80 -0.06 -2.70 16 6 H 0.14 2.47 6.38 -2.39 -0.02 2.45 16 7 C -0.14 -3.03 9.88 30.59 0.30 -2.73 16 8 C -0.20 -5.57 6.19 -11.54 -0.07 -5.64 16 9 H 0.15 3.20 8.14 -2.39 -0.02 3.18 16 10 C 0.52 21.43 7.59 87.66 0.67 22.09 16 11 O -0.59 -29.31 13.10 -3.03 -0.04 -29.35 16 12 N -0.70 -31.20 5.55 -466.77 -2.59 -33.79 16 13 C 0.25 14.30 4.74 85.64 0.41 14.70 16 14 C -0.63 -35.49 9.28 25.60 0.24 -35.25 16 15 H 0.08 3.90 7.60 -2.91 -0.02 3.88 16 16 C -0.03 -1.87 5.46 84.65 0.46 -1.41 16 17 N -0.93 -58.65 13.65 21.45 0.29 -58.36 16 18 Si 1.13 48.61 29.90 68.60 2.05 50.66 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 21 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 22 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.05 6.41 -2.39 -0.02 1.04 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 1.60 6.92 -2.38 -0.02 1.59 16 30 H 0.04 1.31 7.29 -2.39 -0.02 1.29 16 31 H 0.08 2.09 8.03 -2.39 -0.02 2.07 16 32 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.41 15.28 8.32 -92.71 -0.77 14.51 16 34 H -0.02 -1.18 8.01 -2.39 -0.02 -1.20 16 35 H -0.02 -1.19 8.01 -2.38 -0.02 -1.21 16 36 H 0.25 16.61 7.22 -92.71 -0.67 15.94 16 Total: -1.00 -72.57 295.86 3.41 -69.15 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.38 Total: 21.29 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 3.32 Total: -19.62 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -2.30 Total: -92.15 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.04 Total: -29.35 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 2.05 Total: 50.66 kcal Total: -72.57 3.41 -69.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387724685.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.512 kcal (2) G-P(sol) polarization free energy of solvation -72.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds