Wall clock time and date at job start Mon Mar 30 2020 03:12:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52996 * 109.47374 * 2 1
4 4 C 1.53002 * 109.47134 * 119.99737 * 2 1 3
5 5 C 1.53002 * 109.47189 * 174.99880 * 4 2 1
6 6 H 1.08997 * 115.56096 * 29.31132 * 5 4 2
7 7 C 1.53077 * 117.51179 * 243.60993 * 5 4 2
8 8 C 1.52995 * 59.98380 * 252.52230 * 7 5 4
9 9 H 1.09004 * 117.50290 * 252.50270 * 8 7 5
10 10 C 1.52997 * 117.49819 * 107.50169 * 8 7 5
11 11 N 1.46506 * 109.47289 * 116.25324 * 10 8 7
12 12 C 1.34774 * 120.00072 * 180.02562 * 11 10 8
13 13 O 1.21682 * 120.00244 * 0.02562 * 12 11 10
14 14 C 1.46376 * 119.99597 * 180.02562 * 12 11 10
15 15 H 1.08000 * 120.00531 * 359.97438 * 14 12 11
16 16 C 1.40050 * 119.99840 * 179.97438 * 14 12 11
17 17 N 1.30681 * 119.99902 * 0.02562 * 16 14 12
18 18 Si 1.86800 * 120.00281 * 179.97438 * 16 14 12
19 19 H 1.48503 * 109.46848 * 60.00282 * 18 16 14
20 20 H 1.48498 * 109.47295 * 179.97438 * 18 16 14
21 21 H 1.48500 * 109.47035 * 300.00378 * 18 16 14
22 22 H 1.09000 * 109.46803 * 299.99760 * 1 2 3
23 23 H 1.08998 * 109.47022 * 59.99953 * 1 2 3
24 24 H 1.08997 * 109.46839 * 180.02562 * 1 2 3
25 25 H 1.08997 * 109.47189 * 239.99896 * 2 1 3
26 26 H 1.08996 * 109.47787 * 180.02562 * 3 2 1
27 27 H 1.08998 * 109.47084 * 300.00009 * 3 2 1
28 28 H 1.09001 * 109.47544 * 59.99850 * 3 2 1
29 29 H 1.09004 * 109.46837 * 55.00487 * 4 2 1
30 30 H 1.08997 * 109.47685 * 295.00310 * 4 2 1
31 31 H 1.09001 * 117.48978 * 145.03784 * 7 5 4
32 32 H 1.08998 * 117.53326 * 359.97438 * 7 5 4
33 33 H 1.09001 * 109.47289 * 356.25196 * 10 8 7
34 34 H 1.09004 * 109.47261 * 236.25452 * 10 8 7
35 35 H 0.97001 * 119.99251 * 0.02562 * 11 10 8
36 36 H 0.96999 * 120.00129 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5649 -0.8310 1.1880
6 1 4.0721 -0.0356 0.6421
7 6 4.1703 -2.2351 1.1157
8 6 4.2802 -1.4197 2.4056
9 1 5.2580 -1.0111 2.6611
10 6 3.4160 -1.8534 3.5913
11 7 4.2799 -2.2774 4.6960
12 6 3.7346 -2.7044 5.8522
13 8 2.5248 -2.7382 5.9785
14 6 4.5978 -3.1274 6.9561
15 1 5.6716 -3.0978 6.8440
16 6 4.0313 -3.5707 8.1578
17 7 2.7320 -3.6070 8.2933
18 14 5.1327 -4.1113 9.5663
19 1 6.0034 -2.9801 9.9760
20 1 4.2939 -4.5316 10.7174
21 1 5.9764 -5.2510 9.1255
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 1.8933 -0.5138 -0.8899
26 1 3.1300 1.4425 -0.0005
27 1 1.6767 1.9563 -0.8900
28 1 1.6768 1.9564 0.8899
29 1 1.6054 -1.7198 1.2952
30 1 1.7517 -0.1583 2.1370
31 1 5.0757 -2.3627 0.5223
32 1 3.4827 -3.0808 1.1123
33 1 2.7769 -2.6836 3.2907
34 1 2.7967 -1.0168 3.9148
35 1 5.2443 -2.2507 4.5952
36 1 2.3396 -3.9143 9.1254
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000388055192.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:09
Heat of formation + Delta-G solvation = -45.168254 kcal
Electronic energy + Delta-G solvation = -15220.982339 eV
Core-core repulsion = 12704.765969 eV
Total energy + Delta-G solvation = -2516.216371 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-38.65340 -36.95147 -35.28340 -32.81107 -32.00561 -27.63109 -27.18924 -26.95428
-24.96255 -21.53667 -20.37475 -19.69780 -19.18426 -16.98877 -15.88157 -15.30076
-14.86579 -14.29479 -14.01047 -13.82724 -13.66352 -13.23729 -12.65852 -12.40875
-12.25273 -12.05816 -11.65443 -11.58311 -11.14479 -11.01650 -10.95156 -10.78553
-10.76485 -10.47198 -10.39554 -10.21770 -9.66563 -9.56587 -8.80294 -7.56517
-7.41333 -6.14221 -4.59676 3.18422 3.22905 3.25029 3.92014 4.14867
4.63488 4.66175 4.77408 4.89615 4.96406 5.12699 5.22925 5.40575
5.45640 5.57722 5.68942 5.74353 5.77560 5.84815 5.86775 5.97845
5.99375 6.01582 6.13403 6.19847 6.26700 6.39549 6.49289 6.58024
6.70362 7.47114 7.99119 8.17376 8.38216 9.06445 9.60412 10.64960
10.83841
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.050733 B = 0.004780 C = 0.004535
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 551.772931 B = 5855.725232 C = 6172.991054
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.093 4.093
3 C -0.148 4.148
4 C -0.087 4.087
5 C -0.146 4.146
6 H 0.103 0.897
7 C -0.177 4.177
8 C -0.155 4.155
9 H 0.104 0.896
10 C 0.165 3.835
11 N -0.766 5.766
12 C 0.554 3.446
13 O -0.583 6.583
14 C -0.547 4.547
15 H 0.067 0.933
16 C 0.088 3.912
17 N -0.769 5.769
18 Si 0.908 3.092
19 H -0.268 1.268
20 H -0.281 1.281
21 H -0.268 1.268
22 H 0.055 0.945
23 H 0.051 0.949
24 H 0.054 0.946
25 H 0.067 0.933
26 H 0.056 0.944
27 H 0.049 0.951
28 H 0.055 0.945
29 H 0.065 0.935
30 H 0.070 0.930
31 H 0.088 0.912
32 H 0.094 0.906
33 H 0.048 0.952
34 H 0.050 0.950
35 H 0.380 0.620
36 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.391 6.082 -14.401 15.695
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.112 4.112
3 C -0.205 4.205
4 C -0.125 4.125
5 C -0.165 4.165
6 H 0.121 0.879
7 C -0.214 4.214
8 C -0.173 4.173
9 H 0.122 0.878
10 C 0.040 3.960
11 N -0.422 5.422
12 C 0.358 3.642
13 O -0.466 6.466
14 C -0.584 4.584
15 H 0.085 0.915
16 C -0.132 4.132
17 N -0.398 5.398
18 Si 0.733 3.267
19 H -0.193 1.193
20 H -0.206 1.206
21 H -0.193 1.193
22 H 0.074 0.926
23 H 0.070 0.930
24 H 0.073 0.927
25 H 0.086 0.914
26 H 0.075 0.925
27 H 0.068 0.932
28 H 0.074 0.926
29 H 0.084 0.916
30 H 0.088 0.912
31 H 0.107 0.893
32 H 0.112 0.888
33 H 0.066 0.934
34 H 0.069 0.931
35 H 0.211 0.789
36 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 0.298 6.014 -14.186 15.411
hybrid contribution 1.117 -0.260 0.602 1.295
sum 1.415 5.754 -13.585 14.821
Atomic orbital electron populations
1.21850 0.95430 1.01765 1.01558 1.21073 0.95430 0.96203 0.98474
1.21891 1.01122 0.96090 1.01424 1.21244 0.92600 1.00886 0.97736
1.22448 0.95436 0.96720 1.01849 0.87889 1.23172 1.02724 0.94522
1.00953 1.22646 1.00857 1.03879 0.89954 0.87836 1.20381 0.92210
0.98082 0.85292 1.46122 1.08056 1.73162 1.14865 1.18210 0.88303
0.76987 0.80729 1.90590 1.15324 1.58756 1.81894 1.20862 0.93328
1.46523 0.97660 0.91516 1.25707 0.94907 0.93546 0.99032 1.70019
1.10783 1.34125 1.24893 0.86439 0.80416 0.79564 0.80327 1.19312
1.20579 1.19309 0.92572 0.93023 0.92683 0.91410 0.92527 0.93211
0.92630 0.91601 0.91186 0.89307 0.88802 0.93420 0.93139 0.78904
0.92110
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16
2 C -0.09 -0.96 2.92 -90.62 -0.26 -1.23 16
3 C -0.15 -1.41 9.01 37.16 0.33 -1.08 16
4 C -0.09 -1.09 4.05 -26.73 -0.11 -1.20 16
5 C -0.15 -1.82 5.53 -90.58 -0.50 -2.32 16
6 H 0.10 1.15 6.38 -51.93 -0.33 0.81 16
7 C -0.18 -2.29 9.83 -26.69 -0.26 -2.55 16
8 C -0.15 -2.32 5.84 -90.62 -0.53 -2.85 16
9 H 0.10 1.47 8.04 -51.93 -0.42 1.05 16
10 C 0.17 3.30 5.03 -4.04 -0.02 3.28 16
11 N -0.77 -17.82 5.55 -61.72 -0.34 -18.16 16
12 C 0.55 16.27 7.75 -12.99 -0.10 16.17 16
13 O -0.58 -19.42 15.02 5.20 0.08 -19.34 16
14 C -0.55 -15.81 9.54 -35.63 -0.34 -16.15 16
15 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16
16 C 0.09 2.49 5.50 -17.36 -0.10 2.40 16
17 N -0.77 -23.53 11.83 55.55 0.66 -22.87 16
18 Si 0.91 20.44 29.56 -169.99 -5.02 15.41 16
19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16
20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16
21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16
22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16
26 H 0.06 0.52 6.41 -51.93 -0.33 0.19 16
27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16
30 H 0.07 0.97 7.60 -51.93 -0.39 0.57 16
31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16
32 H 0.09 1.27 7.92 -51.93 -0.41 0.86 16
33 H 0.05 1.02 7.88 -51.93 -0.41 0.61 16
34 H 0.05 1.08 7.60 -51.93 -0.39 0.68 16
35 H 0.38 7.74 8.38 -40.82 -0.34 7.40 16
36 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16
LS Contribution 298.68 15.07 4.50 4.50
Total: -1.00 -33.83 298.68 -7.62 -41.45
By element:
Atomic # 1 Polarization: 11.61 SS G_CDS: -5.95 Total: 5.66 kcal
Atomic # 6 Polarization: -5.11 SS G_CDS: -1.54 Total: -6.65 kcal
Atomic # 7 Polarization: -41.35 SS G_CDS: 0.31 Total: -41.04 kcal
Atomic # 8 Polarization: -19.42 SS G_CDS: 0.08 Total: -19.34 kcal
Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal
Total LS contribution 4.50 Total: 4.50 kcal
Total: -33.83 -7.62 -41.45 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000388055192.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.718 kcal
(2) G-P(sol) polarization free energy of solvation -33.827 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.545 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.168 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds