Wall clock time and date at job start Mon Mar 30 2020 03:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47374 * 2 1 4 4 C 1.53002 * 109.47134 * 119.99737 * 2 1 3 5 5 C 1.53002 * 109.47189 * 174.99880 * 4 2 1 6 6 H 1.08997 * 115.56096 * 29.31132 * 5 4 2 7 7 C 1.53077 * 117.51179 * 243.60993 * 5 4 2 8 8 C 1.52995 * 59.98380 * 252.52230 * 7 5 4 9 9 H 1.09004 * 117.50290 * 252.50270 * 8 7 5 10 10 C 1.52997 * 117.49819 * 107.50169 * 8 7 5 11 11 N 1.46506 * 109.47289 * 116.25324 * 10 8 7 12 12 C 1.34774 * 120.00072 * 180.02562 * 11 10 8 13 13 O 1.21682 * 120.00244 * 0.02562 * 12 11 10 14 14 C 1.46376 * 119.99597 * 180.02562 * 12 11 10 15 15 H 1.08000 * 120.00531 * 359.97438 * 14 12 11 16 16 C 1.40050 * 119.99840 * 179.97438 * 14 12 11 17 17 N 1.30681 * 119.99902 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00281 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46848 * 60.00282 * 18 16 14 20 20 H 1.48498 * 109.47295 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47035 * 300.00378 * 18 16 14 22 22 H 1.09000 * 109.46803 * 299.99760 * 1 2 3 23 23 H 1.08998 * 109.47022 * 59.99953 * 1 2 3 24 24 H 1.08997 * 109.46839 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47189 * 239.99896 * 2 1 3 26 26 H 1.08996 * 109.47787 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47084 * 300.00009 * 3 2 1 28 28 H 1.09001 * 109.47544 * 59.99850 * 3 2 1 29 29 H 1.09004 * 109.46837 * 55.00487 * 4 2 1 30 30 H 1.08997 * 109.47685 * 295.00310 * 4 2 1 31 31 H 1.09001 * 117.48978 * 145.03784 * 7 5 4 32 32 H 1.08998 * 117.53326 * 359.97438 * 7 5 4 33 33 H 1.09001 * 109.47289 * 356.25196 * 10 8 7 34 34 H 1.09004 * 109.47261 * 236.25452 * 10 8 7 35 35 H 0.97001 * 119.99251 * 0.02562 * 11 10 8 36 36 H 0.96999 * 120.00129 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 1 4.0721 -0.0356 0.6421 7 6 4.1703 -2.2351 1.1157 8 6 4.2802 -1.4197 2.4056 9 1 5.2580 -1.0111 2.6611 10 6 3.4160 -1.8534 3.5913 11 7 4.2799 -2.2774 4.6960 12 6 3.7346 -2.7044 5.8522 13 8 2.5248 -2.7382 5.9785 14 6 4.5978 -3.1274 6.9561 15 1 5.6716 -3.0978 6.8440 16 6 4.0313 -3.5707 8.1578 17 7 2.7320 -3.6070 8.2933 18 14 5.1327 -4.1113 9.5663 19 1 6.0034 -2.9801 9.9760 20 1 4.2939 -4.5316 10.7174 21 1 5.9764 -5.2510 9.1255 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9564 0.8899 29 1 1.6054 -1.7198 1.2952 30 1 1.7517 -0.1583 2.1370 31 1 5.0757 -2.3627 0.5223 32 1 3.4827 -3.0808 1.1123 33 1 2.7769 -2.6836 3.2907 34 1 2.7967 -1.0168 3.9148 35 1 5.2443 -2.2507 4.5952 36 1 2.3396 -3.9143 9.1254 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388055192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:09 Heat of formation + Delta-G solvation = -45.168254 kcal Electronic energy + Delta-G solvation = -15220.982339 eV Core-core repulsion = 12704.765969 eV Total energy + Delta-G solvation = -2516.216371 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.65340 -36.95147 -35.28340 -32.81107 -32.00561 -27.63109 -27.18924 -26.95428 -24.96255 -21.53667 -20.37475 -19.69780 -19.18426 -16.98877 -15.88157 -15.30076 -14.86579 -14.29479 -14.01047 -13.82724 -13.66352 -13.23729 -12.65852 -12.40875 -12.25273 -12.05816 -11.65443 -11.58311 -11.14479 -11.01650 -10.95156 -10.78553 -10.76485 -10.47198 -10.39554 -10.21770 -9.66563 -9.56587 -8.80294 -7.56517 -7.41333 -6.14221 -4.59676 3.18422 3.22905 3.25029 3.92014 4.14867 4.63488 4.66175 4.77408 4.89615 4.96406 5.12699 5.22925 5.40575 5.45640 5.57722 5.68942 5.74353 5.77560 5.84815 5.86775 5.97845 5.99375 6.01582 6.13403 6.19847 6.26700 6.39549 6.49289 6.58024 6.70362 7.47114 7.99119 8.17376 8.38216 9.06445 9.60412 10.64960 10.83841 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.050733 B = 0.004780 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.772931 B = 5855.725232 C = 6172.991054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.087 4.087 5 C -0.146 4.146 6 H 0.103 0.897 7 C -0.177 4.177 8 C -0.155 4.155 9 H 0.104 0.896 10 C 0.165 3.835 11 N -0.766 5.766 12 C 0.554 3.446 13 O -0.583 6.583 14 C -0.547 4.547 15 H 0.067 0.933 16 C 0.088 3.912 17 N -0.769 5.769 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.268 1.268 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.380 0.620 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 6.082 -14.401 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.125 4.125 5 C -0.165 4.165 6 H 0.121 0.879 7 C -0.214 4.214 8 C -0.173 4.173 9 H 0.122 0.878 10 C 0.040 3.960 11 N -0.422 5.422 12 C 0.358 3.642 13 O -0.466 6.466 14 C -0.584 4.584 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.211 0.789 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.298 6.014 -14.186 15.411 hybrid contribution 1.117 -0.260 0.602 1.295 sum 1.415 5.754 -13.585 14.821 Atomic orbital electron populations 1.21850 0.95430 1.01765 1.01558 1.21073 0.95430 0.96203 0.98474 1.21891 1.01122 0.96090 1.01424 1.21244 0.92600 1.00886 0.97736 1.22448 0.95436 0.96720 1.01849 0.87889 1.23172 1.02724 0.94522 1.00953 1.22646 1.00857 1.03879 0.89954 0.87836 1.20381 0.92210 0.98082 0.85292 1.46122 1.08056 1.73162 1.14865 1.18210 0.88303 0.76987 0.80729 1.90590 1.15324 1.58756 1.81894 1.20862 0.93328 1.46523 0.97660 0.91516 1.25707 0.94907 0.93546 0.99032 1.70019 1.10783 1.34125 1.24893 0.86439 0.80416 0.79564 0.80327 1.19312 1.20579 1.19309 0.92572 0.93023 0.92683 0.91410 0.92527 0.93211 0.92630 0.91601 0.91186 0.89307 0.88802 0.93420 0.93139 0.78904 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 2 C -0.09 -0.96 2.92 -90.62 -0.26 -1.23 16 3 C -0.15 -1.41 9.01 37.16 0.33 -1.08 16 4 C -0.09 -1.09 4.05 -26.73 -0.11 -1.20 16 5 C -0.15 -1.82 5.53 -90.58 -0.50 -2.32 16 6 H 0.10 1.15 6.38 -51.93 -0.33 0.81 16 7 C -0.18 -2.29 9.83 -26.69 -0.26 -2.55 16 8 C -0.15 -2.32 5.84 -90.62 -0.53 -2.85 16 9 H 0.10 1.47 8.04 -51.93 -0.42 1.05 16 10 C 0.17 3.30 5.03 -4.04 -0.02 3.28 16 11 N -0.77 -17.82 5.55 -61.72 -0.34 -18.16 16 12 C 0.55 16.27 7.75 -12.99 -0.10 16.17 16 13 O -0.58 -19.42 15.02 5.20 0.08 -19.34 16 14 C -0.55 -15.81 9.54 -35.63 -0.34 -16.15 16 15 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 16 C 0.09 2.49 5.50 -17.36 -0.10 2.40 16 17 N -0.77 -23.53 11.83 55.55 0.66 -22.87 16 18 Si 0.91 20.44 29.56 -169.99 -5.02 15.41 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.52 6.41 -51.93 -0.33 0.19 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 30 H 0.07 0.97 7.60 -51.93 -0.39 0.57 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.27 7.92 -51.93 -0.41 0.86 16 33 H 0.05 1.02 7.88 -51.93 -0.41 0.61 16 34 H 0.05 1.08 7.60 -51.93 -0.39 0.68 16 35 H 0.38 7.74 8.38 -40.82 -0.34 7.40 16 36 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 LS Contribution 298.68 15.07 4.50 4.50 Total: -1.00 -33.83 298.68 -7.62 -41.45 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.95 Total: 5.66 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -1.54 Total: -6.65 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.31 Total: -41.04 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.08 Total: -19.34 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.83 -7.62 -41.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388055192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.718 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds