Wall clock time and date at job start Mon Mar 30 2020 03:12:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52996 * 109.47374 * 2 1
4 4 C 1.53002 * 109.47134 * 119.99737 * 2 1 3
5 5 C 1.53002 * 109.47189 * 174.99880 * 4 2 1
6 6 H 1.08997 * 115.56096 * 29.31132 * 5 4 2
7 7 C 1.53077 * 117.51179 * 243.60993 * 5 4 2
8 8 C 1.52995 * 59.98380 * 252.52230 * 7 5 4
9 9 H 1.09004 * 117.50290 * 252.50270 * 8 7 5
10 10 C 1.52997 * 117.49819 * 107.50169 * 8 7 5
11 11 N 1.46506 * 109.47289 * 116.25324 * 10 8 7
12 12 C 1.34774 * 120.00072 * 180.02562 * 11 10 8
13 13 O 1.21682 * 120.00244 * 0.02562 * 12 11 10
14 14 C 1.46376 * 119.99597 * 180.02562 * 12 11 10
15 15 H 1.08000 * 120.00531 * 359.97438 * 14 12 11
16 16 C 1.40050 * 119.99840 * 179.97438 * 14 12 11
17 17 N 1.30681 * 119.99902 * 0.02562 * 16 14 12
18 18 Si 1.86800 * 120.00281 * 179.97438 * 16 14 12
19 19 H 1.48503 * 109.46848 * 60.00282 * 18 16 14
20 20 H 1.48498 * 109.47295 * 179.97438 * 18 16 14
21 21 H 1.48500 * 109.47035 * 300.00378 * 18 16 14
22 22 H 1.09000 * 109.46803 * 299.99760 * 1 2 3
23 23 H 1.08998 * 109.47022 * 59.99953 * 1 2 3
24 24 H 1.08997 * 109.46839 * 180.02562 * 1 2 3
25 25 H 1.08997 * 109.47189 * 239.99896 * 2 1 3
26 26 H 1.08996 * 109.47787 * 180.02562 * 3 2 1
27 27 H 1.08998 * 109.47084 * 300.00009 * 3 2 1
28 28 H 1.09001 * 109.47544 * 59.99850 * 3 2 1
29 29 H 1.09004 * 109.46837 * 55.00487 * 4 2 1
30 30 H 1.08997 * 109.47685 * 295.00310 * 4 2 1
31 31 H 1.09001 * 117.48978 * 145.03784 * 7 5 4
32 32 H 1.08998 * 117.53326 * 359.97438 * 7 5 4
33 33 H 1.09001 * 109.47289 * 356.25196 * 10 8 7
34 34 H 1.09004 * 109.47261 * 236.25452 * 10 8 7
35 35 H 0.97001 * 119.99251 * 0.02562 * 11 10 8
36 36 H 0.96999 * 120.00129 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5649 -0.8310 1.1880
6 1 4.0721 -0.0356 0.6421
7 6 4.1703 -2.2351 1.1157
8 6 4.2802 -1.4197 2.4056
9 1 5.2580 -1.0111 2.6611
10 6 3.4160 -1.8534 3.5913
11 7 4.2799 -2.2774 4.6960
12 6 3.7346 -2.7044 5.8522
13 8 2.5248 -2.7382 5.9785
14 6 4.5978 -3.1274 6.9561
15 1 5.6716 -3.0978 6.8440
16 6 4.0313 -3.5707 8.1578
17 7 2.7320 -3.6070 8.2933
18 14 5.1327 -4.1113 9.5663
19 1 6.0034 -2.9801 9.9760
20 1 4.2939 -4.5316 10.7174
21 1 5.9764 -5.2510 9.1255
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 1.8933 -0.5138 -0.8899
26 1 3.1300 1.4425 -0.0005
27 1 1.6767 1.9563 -0.8900
28 1 1.6768 1.9564 0.8899
29 1 1.6054 -1.7198 1.2952
30 1 1.7517 -0.1583 2.1370
31 1 5.0757 -2.3627 0.5223
32 1 3.4827 -3.0808 1.1123
33 1 2.7769 -2.6836 3.2907
34 1 2.7967 -1.0168 3.9148
35 1 5.2443 -2.2507 4.5952
36 1 2.3396 -3.9143 9.1254
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000388055192.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:09
Heat of formation + Delta-G solvation = -67.648186 kcal
Electronic energy + Delta-G solvation = -15221.957142 eV
Core-core repulsion = 12704.765969 eV
Total energy + Delta-G solvation = -2517.191174 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.147 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.99582 -38.88273 -36.36324 -34.83378 -34.12199 -29.33856 -28.28350 -27.97306
-26.81832 -22.62819 -21.80198 -21.43345 -20.38751 -18.98321 -17.44201 -17.07478
-16.03475 -15.89504 -15.65111 -15.38099 -14.90195 -14.53975 -14.23990 -13.74501
-13.55673 -13.26772 -13.08246 -12.94810 -12.70996 -12.64431 -12.52901 -12.23409
-12.04419 -11.76408 -11.66552 -11.40950 -10.93934 -10.80414 -10.73222 -9.87782
-9.47143 -8.29611 -6.86976 1.40133 1.44154 1.56021 2.24933 2.46047
2.76470 3.19439 3.60273 3.64537 3.88850 3.94257 4.14023 4.18274
4.31747 4.39159 4.48772 4.74387 4.81109 4.84646 4.86386 4.91956
4.95950 5.00856 5.09150 5.14774 5.26372 5.30608 5.30919 5.39063
5.53572 5.55202 5.86616 6.23446 6.27489 6.85472 7.55098 8.48046
8.66574
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.050733 B = 0.004780 C = 0.004535
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 551.772931 B = 5855.725232 C = 6172.991054
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.088 4.088
3 C -0.147 4.147
4 C -0.090 4.090
5 C -0.127 4.127
6 H 0.129 0.871
7 C -0.164 4.164
8 C -0.171 4.171
9 H 0.119 0.881
10 C 0.171 3.829
11 N -0.754 5.754
12 C 0.533 3.467
13 O -0.636 6.636
14 C -0.575 4.575
15 H 0.089 0.911
16 C 0.027 3.973
17 N -0.824 5.824
18 Si 1.002 2.998
19 H -0.253 1.253
20 H -0.274 1.274
21 H -0.253 1.253
22 H 0.046 0.954
23 H 0.068 0.932
24 H 0.049 0.951
25 H 0.079 0.921
26 H 0.062 0.938
27 H 0.064 0.936
28 H 0.045 0.955
29 H 0.050 0.950
30 H 0.049 0.951
31 H 0.116 0.884
32 H 0.083 0.917
33 H 0.026 0.974
34 H 0.028 0.972
35 H 0.396 0.604
36 H 0.275 0.725
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.648 6.368 -15.282 16.953
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.107 4.107
3 C -0.204 4.204
4 C -0.128 4.128
5 C -0.146 4.146
6 H 0.147 0.853
7 C -0.201 4.201
8 C -0.190 4.190
9 H 0.137 0.863
10 C 0.047 3.953
11 N -0.408 5.408
12 C 0.338 3.662
13 O -0.523 6.523
14 C -0.611 4.611
15 H 0.107 0.893
16 C -0.188 4.188
17 N -0.453 5.453
18 Si 0.820 3.180
19 H -0.177 1.177
20 H -0.199 1.199
21 H -0.177 1.177
22 H 0.065 0.935
23 H 0.087 0.913
24 H 0.069 0.931
25 H 0.098 0.902
26 H 0.081 0.919
27 H 0.083 0.917
28 H 0.064 0.936
29 H 0.069 0.931
30 H 0.067 0.933
31 H 0.135 0.865
32 H 0.102 0.898
33 H 0.044 0.956
34 H 0.046 0.954
35 H 0.230 0.770
36 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 2.599 6.319 -15.122 16.594
hybrid contribution 0.361 -0.333 0.815 0.951
sum 2.960 5.986 -14.307 15.789
Atomic orbital electron populations
1.21866 0.95306 1.01627 1.01941 1.21048 0.95588 0.96664 0.97380
1.21884 1.01494 0.95289 1.01737 1.21255 0.93089 1.00104 0.98319
1.22557 0.95086 0.97396 0.99521 0.85292 1.23249 1.03546 0.94282
0.99035 1.22459 1.01018 1.06643 0.88865 0.86288 1.20348 0.92406
0.96360 0.86205 1.45823 1.09203 1.71623 1.14179 1.18689 0.87896
0.77081 0.82562 1.90541 1.17436 1.61084 1.83280 1.21429 0.94472
1.46922 0.98320 0.89279 1.27036 0.96613 0.92734 1.02406 1.70198
1.13666 1.35145 1.26306 0.85024 0.77855 0.79651 0.75439 1.17723
1.19868 1.17731 0.93515 0.91307 0.93141 0.90235 0.91893 0.91679
0.93583 0.93128 0.93252 0.86531 0.89842 0.95597 0.95363 0.77035
0.91537
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.85 9.19 71.98 0.66 -2.18 16
2 C -0.09 -1.70 2.92 -10.79 -0.03 -1.73 16
3 C -0.15 -2.50 9.01 71.98 0.65 -1.85 16
4 C -0.09 -2.26 4.05 30.60 0.12 -2.13 16
5 C -0.13 -2.95 5.53 -10.77 -0.06 -3.01 16
6 H 0.13 2.41 6.38 -2.39 -0.02 2.39 16
7 C -0.16 -3.92 9.83 30.62 0.30 -3.62 16
8 C -0.17 -4.96 5.84 -10.80 -0.06 -5.03 16
9 H 0.12 3.11 8.04 -2.39 -0.02 3.10 16
10 C 0.17 7.10 5.03 86.38 0.43 7.53 16
11 N -0.75 -35.76 5.55 -467.40 -2.59 -38.35 16
12 C 0.53 32.36 7.75 86.36 0.67 33.03 16
13 O -0.64 -44.50 15.02 -4.29 -0.06 -44.57 16
14 C -0.57 -33.51 9.54 24.83 0.24 -33.27 16
15 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16
16 C 0.03 1.54 5.50 85.30 0.47 2.01 16
17 N -0.82 -51.71 11.83 21.84 0.26 -51.45 16
18 Si 1.00 41.51 29.56 68.60 2.03 43.54 16
19 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16
20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16
21 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16
22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
23 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16
24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
26 H 0.06 0.99 6.41 -2.39 -0.02 0.97 16
27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16
29 H 0.05 1.40 7.88 -2.38 -0.02 1.38 16
30 H 0.05 1.43 7.60 -2.39 -0.02 1.41 16
31 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16
32 H 0.08 2.19 7.92 -2.39 -0.02 2.17 16
33 H 0.03 1.17 7.88 -2.39 -0.02 1.15 16
34 H 0.03 1.28 7.60 -2.38 -0.02 1.26 16
35 H 0.40 16.01 8.38 -92.71 -0.78 15.23 16
36 H 0.27 15.59 8.29 -92.71 -0.77 14.83 16
Total: -1.00 -76.16 298.68 3.29 -72.87
By element:
Atomic # 1 Polarization: 27.95 SS G_CDS: 0.27 Total: 28.22 kcal
Atomic # 6 Polarization: -13.65 SS G_CDS: 3.39 Total: -10.26 kcal
Atomic # 7 Polarization: -87.46 SS G_CDS: -2.34 Total: -89.80 kcal
Atomic # 8 Polarization: -44.50 SS G_CDS: -0.06 Total: -44.57 kcal
Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal
Total: -76.16 3.29 -72.87 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000388055192.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.224 kcal
(2) G-P(sol) polarization free energy of solvation -76.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.939 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.648 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds