Wall clock time and date at job start Mon Mar 30 2020 03:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47374 * 2 1 4 4 C 1.53002 * 109.47134 * 119.99737 * 2 1 3 5 5 C 1.53002 * 109.47189 * 174.99880 * 4 2 1 6 6 H 1.08997 * 115.56096 * 29.31132 * 5 4 2 7 7 C 1.53077 * 117.51179 * 243.60993 * 5 4 2 8 8 C 1.52995 * 59.98380 * 252.52230 * 7 5 4 9 9 H 1.09004 * 117.50290 * 252.50270 * 8 7 5 10 10 C 1.52997 * 117.49819 * 107.50169 * 8 7 5 11 11 N 1.46506 * 109.47289 * 116.25324 * 10 8 7 12 12 C 1.34774 * 120.00072 * 180.02562 * 11 10 8 13 13 O 1.21682 * 120.00244 * 0.02562 * 12 11 10 14 14 C 1.46376 * 119.99597 * 180.02562 * 12 11 10 15 15 H 1.08000 * 120.00531 * 359.97438 * 14 12 11 16 16 C 1.40050 * 119.99840 * 179.97438 * 14 12 11 17 17 N 1.30681 * 119.99902 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00281 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46848 * 60.00282 * 18 16 14 20 20 H 1.48498 * 109.47295 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47035 * 300.00378 * 18 16 14 22 22 H 1.09000 * 109.46803 * 299.99760 * 1 2 3 23 23 H 1.08998 * 109.47022 * 59.99953 * 1 2 3 24 24 H 1.08997 * 109.46839 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47189 * 239.99896 * 2 1 3 26 26 H 1.08996 * 109.47787 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47084 * 300.00009 * 3 2 1 28 28 H 1.09001 * 109.47544 * 59.99850 * 3 2 1 29 29 H 1.09004 * 109.46837 * 55.00487 * 4 2 1 30 30 H 1.08997 * 109.47685 * 295.00310 * 4 2 1 31 31 H 1.09001 * 117.48978 * 145.03784 * 7 5 4 32 32 H 1.08998 * 117.53326 * 359.97438 * 7 5 4 33 33 H 1.09001 * 109.47289 * 356.25196 * 10 8 7 34 34 H 1.09004 * 109.47261 * 236.25452 * 10 8 7 35 35 H 0.97001 * 119.99251 * 0.02562 * 11 10 8 36 36 H 0.96999 * 120.00129 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1880 6 1 4.0721 -0.0356 0.6421 7 6 4.1703 -2.2351 1.1157 8 6 4.2802 -1.4197 2.4056 9 1 5.2580 -1.0111 2.6611 10 6 3.4160 -1.8534 3.5913 11 7 4.2799 -2.2774 4.6960 12 6 3.7346 -2.7044 5.8522 13 8 2.5248 -2.7382 5.9785 14 6 4.5978 -3.1274 6.9561 15 1 5.6716 -3.0978 6.8440 16 6 4.0313 -3.5707 8.1578 17 7 2.7320 -3.6070 8.2933 18 14 5.1327 -4.1113 9.5663 19 1 6.0034 -2.9801 9.9760 20 1 4.2939 -4.5316 10.7174 21 1 5.9764 -5.2510 9.1255 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9564 0.8899 29 1 1.6054 -1.7198 1.2952 30 1 1.7517 -0.1583 2.1370 31 1 5.0757 -2.3627 0.5223 32 1 3.4827 -3.0808 1.1123 33 1 2.7769 -2.6836 3.2907 34 1 2.7967 -1.0168 3.9148 35 1 5.2443 -2.2507 4.5952 36 1 2.3396 -3.9143 9.1254 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388055192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:09 Heat of formation + Delta-G solvation = -67.648186 kcal Electronic energy + Delta-G solvation = -15221.957142 eV Core-core repulsion = 12704.765969 eV Total energy + Delta-G solvation = -2517.191174 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99582 -38.88273 -36.36324 -34.83378 -34.12199 -29.33856 -28.28350 -27.97306 -26.81832 -22.62819 -21.80198 -21.43345 -20.38751 -18.98321 -17.44201 -17.07478 -16.03475 -15.89504 -15.65111 -15.38099 -14.90195 -14.53975 -14.23990 -13.74501 -13.55673 -13.26772 -13.08246 -12.94810 -12.70996 -12.64431 -12.52901 -12.23409 -12.04419 -11.76408 -11.66552 -11.40950 -10.93934 -10.80414 -10.73222 -9.87782 -9.47143 -8.29611 -6.86976 1.40133 1.44154 1.56021 2.24933 2.46047 2.76470 3.19439 3.60273 3.64537 3.88850 3.94257 4.14023 4.18274 4.31747 4.39159 4.48772 4.74387 4.81109 4.84646 4.86386 4.91956 4.95950 5.00856 5.09150 5.14774 5.26372 5.30608 5.30919 5.39063 5.53572 5.55202 5.86616 6.23446 6.27489 6.85472 7.55098 8.48046 8.66574 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.050733 B = 0.004780 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.772931 B = 5855.725232 C = 6172.991054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.147 4.147 4 C -0.090 4.090 5 C -0.127 4.127 6 H 0.129 0.871 7 C -0.164 4.164 8 C -0.171 4.171 9 H 0.119 0.881 10 C 0.171 3.829 11 N -0.754 5.754 12 C 0.533 3.467 13 O -0.636 6.636 14 C -0.575 4.575 15 H 0.089 0.911 16 C 0.027 3.973 17 N -0.824 5.824 18 Si 1.002 2.998 19 H -0.253 1.253 20 H -0.274 1.274 21 H -0.253 1.253 22 H 0.046 0.954 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.026 0.974 34 H 0.028 0.972 35 H 0.396 0.604 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 6.368 -15.282 16.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.128 4.128 5 C -0.146 4.146 6 H 0.147 0.853 7 C -0.201 4.201 8 C -0.190 4.190 9 H 0.137 0.863 10 C 0.047 3.953 11 N -0.408 5.408 12 C 0.338 3.662 13 O -0.523 6.523 14 C -0.611 4.611 15 H 0.107 0.893 16 C -0.188 4.188 17 N -0.453 5.453 18 Si 0.820 3.180 19 H -0.177 1.177 20 H -0.199 1.199 21 H -0.177 1.177 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.135 0.865 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.230 0.770 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.599 6.319 -15.122 16.594 hybrid contribution 0.361 -0.333 0.815 0.951 sum 2.960 5.986 -14.307 15.789 Atomic orbital electron populations 1.21866 0.95306 1.01627 1.01941 1.21048 0.95588 0.96664 0.97380 1.21884 1.01494 0.95289 1.01737 1.21255 0.93089 1.00104 0.98319 1.22557 0.95086 0.97396 0.99521 0.85292 1.23249 1.03546 0.94282 0.99035 1.22459 1.01018 1.06643 0.88865 0.86288 1.20348 0.92406 0.96360 0.86205 1.45823 1.09203 1.71623 1.14179 1.18689 0.87896 0.77081 0.82562 1.90541 1.17436 1.61084 1.83280 1.21429 0.94472 1.46922 0.98320 0.89279 1.27036 0.96613 0.92734 1.02406 1.70198 1.13666 1.35145 1.26306 0.85024 0.77855 0.79651 0.75439 1.17723 1.19868 1.17731 0.93515 0.91307 0.93141 0.90235 0.91893 0.91679 0.93583 0.93128 0.93252 0.86531 0.89842 0.95597 0.95363 0.77035 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.19 71.98 0.66 -2.18 16 2 C -0.09 -1.70 2.92 -10.79 -0.03 -1.73 16 3 C -0.15 -2.50 9.01 71.98 0.65 -1.85 16 4 C -0.09 -2.26 4.05 30.60 0.12 -2.13 16 5 C -0.13 -2.95 5.53 -10.77 -0.06 -3.01 16 6 H 0.13 2.41 6.38 -2.39 -0.02 2.39 16 7 C -0.16 -3.92 9.83 30.62 0.30 -3.62 16 8 C -0.17 -4.96 5.84 -10.80 -0.06 -5.03 16 9 H 0.12 3.11 8.04 -2.39 -0.02 3.10 16 10 C 0.17 7.10 5.03 86.38 0.43 7.53 16 11 N -0.75 -35.76 5.55 -467.40 -2.59 -38.35 16 12 C 0.53 32.36 7.75 86.36 0.67 33.03 16 13 O -0.64 -44.50 15.02 -4.29 -0.06 -44.57 16 14 C -0.57 -33.51 9.54 24.83 0.24 -33.27 16 15 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 16 C 0.03 1.54 5.50 85.30 0.47 2.01 16 17 N -0.82 -51.71 11.83 21.84 0.26 -51.45 16 18 Si 1.00 41.51 29.56 68.60 2.03 43.54 16 19 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 0.99 6.41 -2.39 -0.02 0.97 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 1.40 7.88 -2.38 -0.02 1.38 16 30 H 0.05 1.43 7.60 -2.39 -0.02 1.41 16 31 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.08 2.19 7.92 -2.39 -0.02 2.17 16 33 H 0.03 1.17 7.88 -2.39 -0.02 1.15 16 34 H 0.03 1.28 7.60 -2.38 -0.02 1.26 16 35 H 0.40 16.01 8.38 -92.71 -0.78 15.23 16 36 H 0.27 15.59 8.29 -92.71 -0.77 14.83 16 Total: -1.00 -76.16 298.68 3.29 -72.87 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 0.27 Total: 28.22 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 3.39 Total: -10.26 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -2.34 Total: -89.80 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.06 Total: -44.57 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -76.16 3.29 -72.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388055192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.224 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds