Wall clock time and date at job start Mon Mar 30 2020 03:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09006 * 115.54985 * 29.27996 * 5 4 2 7 7 C 1.52999 * 117.50069 * 243.61435 * 5 4 2 8 8 C 1.52998 * 117.50153 * 174.98695 * 5 4 2 9 9 H 1.08993 * 117.49578 * 0.02562 * 8 5 4 10 10 C 1.52998 * 117.50035 * 214.97849 * 8 5 4 11 11 N 1.46499 * 109.46954 * 174.99953 * 10 8 5 12 12 C 1.34782 * 120.00086 * 180.02562 * 11 10 8 13 13 O 1.21691 * 119.99537 * 0.02562 * 12 11 10 14 14 C 1.46372 * 120.00183 * 179.97438 * 12 11 10 15 15 H 1.07997 * 120.00117 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00073 * 180.02562 * 14 12 11 17 17 N 1.30671 * 119.99649 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 120.00175 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46858 * 60.00155 * 18 16 14 20 20 H 1.48497 * 109.47361 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47326 * 300.00430 * 18 16 14 22 22 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 23 23 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 24 24 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 26 26 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 27 27 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 28 28 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 29 29 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 30 30 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 31 31 H 1.09003 * 117.49780 * 359.97438 * 7 5 4 32 32 H 1.09002 * 117.50030 * 144.99753 * 7 5 4 33 33 H 1.09000 * 109.47249 * 294.99765 * 10 8 5 34 34 H 1.09004 * 109.47350 * 55.00325 * 10 8 5 35 35 H 0.96998 * 120.00207 * 0.02562 * 11 10 8 36 36 H 0.97004 * 119.99547 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1881 6 1 4.0718 -0.0357 0.6417 7 6 4.1696 -2.2345 1.1159 8 6 4.2801 -1.4192 2.4059 9 1 3.6645 -1.7283 3.2505 10 6 5.6528 -0.8461 2.7640 11 7 6.1209 -1.4458 4.0159 12 6 7.3149 -1.0887 4.5292 13 8 8.0038 -0.2676 3.9528 14 6 7.7824 -1.6875 5.7803 15 1 7.1708 -2.4158 6.2920 16 6 9.0228 -1.3159 6.3139 17 7 9.7625 -0.4343 5.6951 18 14 9.6191 -2.0795 7.9110 19 1 9.7258 -3.5515 7.7462 20 1 10.9512 -1.5230 8.2587 21 1 8.6545 -1.7717 8.9973 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8898 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.7515 -0.1582 2.1370 30 1 1.6053 -1.7197 1.2953 31 1 3.4812 -3.0796 1.1124 32 1 5.0746 -2.3625 0.5220 33 1 6.3602 -1.0720 1.9661 34 1 5.5750 0.2343 2.8855 35 1 5.5716 -2.1000 4.4755 36 1 10.6215 -0.1767 6.0649 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388055195.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:18 Heat of formation + Delta-G solvation = -68.426944 kcal Electronic energy + Delta-G solvation = -15017.427292 eV Core-core repulsion = 12500.202349 eV Total energy + Delta-G solvation = -2517.224943 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.89558 -38.88386 -36.43113 -34.83591 -34.13307 -29.56082 -28.20303 -27.97904 -26.48755 -22.53637 -21.76996 -21.51169 -20.59881 -19.12112 -17.44858 -16.86985 -16.01877 -15.89695 -15.67290 -15.32149 -14.99441 -14.48275 -14.12994 -13.85759 -13.49592 -13.20436 -13.08038 -12.94372 -12.70013 -12.63939 -12.48170 -12.25619 -12.04954 -11.80635 -11.64127 -11.43390 -10.94020 -10.84456 -10.70031 -9.87641 -9.47665 -8.29810 -6.87163 1.40223 1.44274 1.56178 2.24880 2.45755 2.75338 3.16267 3.60727 3.68741 3.93393 3.95081 4.13199 4.22648 4.27818 4.39363 4.50783 4.73545 4.82904 4.84953 4.88607 4.92042 4.97279 5.00953 5.10760 5.17530 5.26758 5.30811 5.30933 5.43024 5.54419 5.56618 5.86407 6.23021 6.26923 6.85237 7.54735 8.47712 8.66330 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.062688 B = 0.004230 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.550040 B = 6618.560109 C = 6760.189724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.079 4.079 5 C -0.134 4.134 6 H 0.099 0.901 7 C -0.163 4.163 8 C -0.166 4.166 9 H 0.117 0.883 10 C 0.167 3.833 11 N -0.753 5.753 12 C 0.533 3.467 13 O -0.636 6.636 14 C -0.575 4.575 15 H 0.089 0.911 16 C 0.026 3.974 17 N -0.824 5.824 18 Si 1.002 2.998 19 H -0.253 1.253 20 H -0.274 1.274 21 H -0.253 1.253 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.028 0.972 34 H 0.028 0.972 35 H 0.396 0.604 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.005 -3.081 -7.442 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.116 4.116 5 C -0.153 4.153 6 H 0.117 0.883 7 C -0.200 4.200 8 C -0.185 4.185 9 H 0.135 0.865 10 C 0.042 3.958 11 N -0.407 5.407 12 C 0.338 3.662 13 O -0.524 6.524 14 C -0.611 4.611 15 H 0.107 0.893 16 C -0.189 4.189 17 N -0.453 5.453 18 Si 0.821 3.179 19 H -0.177 1.177 20 H -0.199 1.199 21 H -0.177 1.177 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.230 0.770 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.377 -2.373 -7.904 18.339 hybrid contribution 0.500 -0.212 0.677 0.868 sum -15.876 -2.585 -7.228 17.635 Atomic orbital electron populations 1.21821 0.94291 1.02109 1.01993 1.21066 0.96213 0.95920 0.97915 1.21922 1.00794 0.96359 1.01831 1.21244 0.90863 1.01204 0.98307 1.22555 0.96183 0.96902 0.99638 0.88299 1.23277 1.03000 0.94999 0.98742 1.22435 0.96074 1.06186 0.93760 0.86499 1.20423 0.93115 0.95661 0.86562 1.45803 1.21416 1.47789 1.25721 1.18694 0.79788 0.81625 0.86111 1.90544 1.58019 1.39076 1.64748 1.21427 1.05273 1.26946 1.07471 0.89258 1.27051 0.95775 0.93755 1.02331 1.70197 1.10227 1.26150 1.38725 0.85009 0.77709 0.79164 0.76000 1.17727 1.19884 1.17708 0.92762 0.92160 0.92147 0.91052 0.93414 0.92081 0.92956 0.91833 0.90703 0.86736 0.89654 0.95355 0.95327 0.77015 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.19 71.98 0.66 -1.31 16 2 C -0.09 -1.53 2.92 -10.79 -0.03 -1.56 16 3 C -0.15 -2.71 9.01 71.98 0.65 -2.06 16 4 C -0.08 -1.47 4.96 30.59 0.15 -1.32 16 5 C -0.13 -3.18 5.24 -10.80 -0.06 -3.24 16 6 H 0.10 2.52 6.38 -2.38 -0.02 2.50 16 7 C -0.16 -3.93 9.82 30.60 0.30 -3.63 16 8 C -0.17 -4.83 5.57 -10.79 -0.06 -4.89 16 9 H 0.12 3.12 8.04 -2.39 -0.02 3.11 16 10 C 0.17 6.91 5.96 86.38 0.51 7.43 16 11 N -0.75 -35.64 5.55 -467.40 -2.59 -38.24 16 12 C 0.53 32.33 7.75 86.36 0.67 33.00 16 13 O -0.64 -44.50 15.02 -4.32 -0.06 -44.56 16 14 C -0.57 -33.47 9.54 24.83 0.24 -33.23 16 15 H 0.09 4.62 7.85 -2.91 -0.02 4.59 16 16 C 0.03 1.47 5.50 85.31 0.47 1.94 16 17 N -0.82 -51.68 11.83 21.84 0.26 -51.42 16 18 Si 1.00 41.49 29.56 68.60 2.03 43.52 16 19 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 21 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 22 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 0.96 6.41 -2.39 -0.02 0.94 16 27 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.23 7.87 -2.39 -0.02 1.21 16 31 H 0.11 2.23 8.03 -2.39 -0.02 2.21 16 32 H 0.08 2.21 8.03 -2.39 -0.02 2.19 16 33 H 0.03 1.27 7.88 -2.39 -0.02 1.25 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.40 16.00 8.38 -92.71 -0.78 15.22 16 36 H 0.27 15.59 8.29 -92.71 -0.77 14.82 16 Total: -1.00 -75.72 301.03 3.40 -72.32 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.27 Total: 27.27 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 3.50 Total: -8.89 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -2.34 Total: -89.65 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.06 Total: -44.56 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -75.72 3.40 -72.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388055195.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.893 kcal (2) G-P(sol) polarization free energy of solvation -75.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds