Wall clock time and date at job start Mon Mar 30 2020 02:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.46506 * 119.99453 * 300.00085 * 12 2 1 14 14 C 1.34773 * 120.00731 * 120.00078 * 12 2 1 15 15 O 1.21282 * 119.99450 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00513 * 179.97438 * 14 12 2 17 17 C 1.53777 * 113.61266 * 277.49986 * 16 14 12 18 18 C 1.53780 * 87.07955 * 220.01726 * 17 16 14 19 19 C 1.52999 * 113.61741 * 139.98040 * 18 17 16 20 20 C 1.53775 * 113.61413 * 179.97438 * 16 14 12 21 21 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47497 * 90.00369 * 13 12 2 26 26 H 1.09004 * 109.46702 * 209.99812 * 13 12 2 27 27 H 1.08998 * 109.47259 * 329.99392 * 13 12 2 28 28 H 1.08998 * 112.84666 * 48.80058 * 16 14 12 29 29 H 1.09000 * 113.61443 * 334.56166 * 17 16 14 30 30 H 1.08990 * 113.61746 * 105.47139 * 17 16 14 31 31 H 1.08998 * 113.61523 * 270.88430 * 18 17 16 32 32 H 1.08995 * 109.46843 * 322.49879 * 19 18 17 33 33 H 1.08994 * 109.47037 * 82.50048 * 19 18 17 34 34 H 1.09001 * 109.47477 * 202.50277 * 19 18 17 35 35 H 1.08999 * 113.61999 * 254.52557 * 20 16 14 36 36 H 1.09002 * 113.61683 * 25.43527 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 7 2.0183 -0.6904 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.0858 1.1257 -1.8916 16 6 3.2960 -0.7460 -3.3136 17 6 4.5554 -1.5925 -3.0646 18 6 5.0651 -1.0927 -4.4267 19 6 6.5593 -0.7642 -4.4390 20 6 4.1650 0.1381 -4.2236 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7006 1.1552 3.4844 25 1 0.7375 -2.1442 -1.9995 26 1 2.4628 -2.5817 -1.9866 27 1 1.5295 -2.5968 -0.4710 28 1 2.5083 -1.2790 -3.8462 29 1 5.1536 -1.2475 -2.2213 30 1 4.3624 -2.6648 -3.0374 31 1 4.7620 -1.7215 -5.2638 32 1 6.8393 -0.3100 -3.4886 33 1 7.1314 -1.6801 -4.5867 34 1 6.7717 -0.0683 -5.2507 35 1 3.6569 0.4623 -5.1318 36 1 4.6565 0.9563 -3.6972 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610653458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:48 Heat of formation + Delta-G solvation = -27.367367 kcal Electronic energy + Delta-G solvation = -16123.054510 eV Core-core repulsion = 13607.610044 eV Total energy + Delta-G solvation = -2515.444466 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90953 -37.47851 -35.17159 -32.79583 -30.25188 -29.02049 -26.04406 -25.48087 -25.21165 -24.12487 -20.78317 -19.25950 -18.08823 -16.67339 -16.15264 -15.35355 -15.27248 -14.38800 -14.34529 -13.38970 -13.15892 -13.01641 -12.48057 -12.26869 -12.16116 -11.90266 -11.63184 -11.39050 -11.10643 -11.03255 -10.84123 -10.71715 -10.57167 -10.31981 -10.21076 -10.13364 -10.04965 -9.14379 -8.74957 -8.39075 -7.51264 -6.04881 -4.12817 3.27924 3.34200 3.35636 3.45026 4.05088 4.41811 4.64749 4.76389 4.92832 5.00691 5.25909 5.39097 5.53932 5.58981 5.76076 5.81836 5.82279 5.93829 6.01835 6.09015 6.14796 6.18588 6.39839 6.42437 6.66154 6.79131 6.88170 7.11178 7.49532 7.58425 7.75483 8.05798 8.24102 8.61584 8.86966 9.15435 9.53812 11.00390 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035830 B = 0.007184 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.279465 B = 3896.781284 C = 4154.291842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.592 5.592 13 C 0.085 3.915 14 C 0.512 3.488 15 O -0.555 6.555 16 C -0.137 4.137 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.141 4.141 20 C -0.113 4.113 21 H 0.093 0.907 22 H 0.010 0.990 23 H 0.029 0.971 24 H 0.263 0.737 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.604 -6.571 -11.625 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.323 5.323 13 C -0.059 4.059 14 C 0.299 3.701 15 O -0.434 6.434 16 C -0.159 4.159 17 C -0.155 4.155 18 C -0.135 4.135 19 C -0.198 4.198 20 C -0.151 4.151 21 H 0.111 0.889 22 H 0.029 0.971 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.643 -5.847 -11.343 13.579 hybrid contribution 0.106 -0.642 0.922 1.129 sum 4.749 -6.488 -10.420 13.162 Atomic orbital electron populations 1.22073 0.98290 0.99318 1.00718 1.18921 0.90834 0.94540 0.80142 0.92022 1.21330 1.31597 1.13017 0.90354 0.92287 1.24899 0.94965 0.95027 0.98952 1.69882 1.36344 1.22727 1.23686 0.86503 0.78622 0.79865 0.82432 1.20635 1.21123 1.19946 1.48211 1.48907 1.11587 1.23599 1.21588 0.98694 0.83486 1.02165 1.20274 0.78786 0.86894 0.84182 1.90619 1.58539 1.17240 1.77032 1.22696 0.97683 0.99238 0.96251 1.22924 0.95661 0.99078 0.97794 1.22490 0.95269 0.98167 0.97590 1.21708 0.95090 1.01018 1.02007 1.22880 0.96648 0.96928 0.98638 0.88889 0.97101 0.95228 0.92719 0.94171 0.92668 0.90296 0.87855 0.89545 0.91158 0.89449 0.92380 0.92915 0.92675 0.91630 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.97 37.16 0.33 -3.24 16 2 C 0.26 6.71 2.64 -69.08 -0.18 6.53 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.39 7.99 -34.44 -0.28 -14.66 16 5 H 0.06 1.59 7.33 -52.49 -0.38 1.20 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.50 11.31 55.43 0.63 -24.87 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.59 -13.00 2.75 -175.25 -0.48 -13.49 16 13 C 0.08 1.47 9.10 59.85 0.54 2.01 16 14 C 0.51 10.92 7.20 -10.99 -0.08 10.84 16 15 O -0.56 -14.13 15.23 5.56 0.08 -14.05 16 16 C -0.14 -2.12 2.79 -90.96 -0.25 -2.38 16 17 C -0.12 -1.57 6.47 -25.92 -0.17 -1.74 16 18 C -0.12 -1.34 4.36 -89.79 -0.39 -1.74 16 19 C -0.14 -1.49 9.71 37.16 0.36 -1.12 16 20 C -0.11 -1.59 6.97 -25.90 -0.18 -1.77 16 21 H 0.09 2.50 6.06 -51.93 -0.31 2.18 16 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.79 5.79 -51.93 -0.30 0.49 16 27 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 28 H 0.10 1.38 7.85 -51.93 -0.41 0.97 16 29 H 0.09 1.32 7.91 -51.93 -0.41 0.91 16 30 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.67 7.94 -51.93 -0.41 0.26 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.54 7.39 -51.93 -0.38 1.16 16 LS Contribution 288.34 15.07 4.35 4.35 Total: -1.00 -30.96 288.34 -6.64 -37.60 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.81 Total: -0.15 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.39 Total: -5.61 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.14 Total: -38.36 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.08 Total: -14.05 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.96 -6.64 -37.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610653458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.232 kcal (2) G-P(sol) polarization free energy of solvation -30.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds