Wall clock time and date at job start Mon Mar 30 2020 02:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 N 1.46499 * 109.47185 * 240.00729 * 2 1 3 13 13 C 1.46506 * 119.99453 * 300.00085 * 12 2 1 14 14 C 1.34773 * 120.00731 * 120.00078 * 12 2 1 15 15 O 1.21282 * 119.99450 * 359.97438 * 14 12 2 16 16 C 1.50703 * 120.00513 * 179.97438 * 14 12 2 17 17 C 1.53777 * 113.61266 * 277.49986 * 16 14 12 18 18 C 1.53780 * 87.07955 * 220.01726 * 17 16 14 19 19 C 1.52999 * 113.61741 * 139.98040 * 18 17 16 20 20 C 1.53775 * 113.61413 * 179.97438 * 16 14 12 21 21 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47497 * 90.00369 * 13 12 2 26 26 H 1.09004 * 109.46702 * 209.99812 * 13 12 2 27 27 H 1.08998 * 109.47259 * 329.99392 * 13 12 2 28 28 H 1.08998 * 112.84666 * 48.80058 * 16 14 12 29 29 H 1.09000 * 113.61443 * 334.56166 * 17 16 14 30 30 H 1.08990 * 113.61746 * 105.47139 * 17 16 14 31 31 H 1.08998 * 113.61523 * 270.88430 * 18 17 16 32 32 H 1.08995 * 109.46843 * 322.49879 * 19 18 17 33 33 H 1.08994 * 109.47037 * 82.50048 * 19 18 17 34 34 H 1.09001 * 109.47477 * 202.50277 * 19 18 17 35 35 H 1.08999 * 113.61999 * 254.52557 * 20 16 14 36 36 H 1.09002 * 113.61683 * 25.43527 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 7 2.0183 -0.6904 -1.1962 13 6 1.6643 -2.0931 -1.4282 14 6 2.7932 -0.0355 -2.0834 15 8 3.0858 1.1257 -1.8916 16 6 3.2960 -0.7460 -3.3136 17 6 4.5554 -1.5925 -3.0646 18 6 5.0651 -1.0927 -4.4267 19 6 6.5593 -0.7642 -4.4390 20 6 4.1650 0.1381 -4.2236 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7006 1.1552 3.4844 25 1 0.7375 -2.1442 -1.9995 26 1 2.4628 -2.5817 -1.9866 27 1 1.5295 -2.5968 -0.4710 28 1 2.5083 -1.2790 -3.8462 29 1 5.1536 -1.2475 -2.2213 30 1 4.3624 -2.6648 -3.0374 31 1 4.7620 -1.7215 -5.2638 32 1 6.8393 -0.3100 -3.4886 33 1 7.1314 -1.6801 -4.5867 34 1 6.7717 -0.0683 -5.2507 35 1 3.6569 0.4623 -5.1318 36 1 4.6565 0.9563 -3.6972 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610653458.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:48 Heat of formation + Delta-G solvation = -46.361766 kcal Electronic energy + Delta-G solvation = -16123.878169 eV Core-core repulsion = 13607.610044 eV Total energy + Delta-G solvation = -2516.268125 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.33296 -38.89555 -37.02525 -34.77912 -31.79898 -30.45283 -27.56308 -27.32922 -26.57152 -25.49962 -22.49915 -20.39745 -19.67858 -18.54977 -17.86282 -17.15608 -16.47128 -16.18902 -15.89332 -14.88461 -14.47314 -14.32306 -14.01760 -13.68965 -13.53120 -13.44762 -13.09956 -12.98497 -12.83150 -12.76481 -12.64236 -12.22975 -12.10995 -12.07675 -11.70561 -11.38105 -11.19369 -11.05912 -10.59519 -10.35424 -9.30321 -8.15633 -6.32713 1.39932 1.41341 1.51503 1.82369 2.33304 2.53392 3.11847 3.57834 3.66023 3.80388 3.88436 4.19201 4.48844 4.52857 4.68004 4.74133 4.77110 4.84536 4.87347 4.88205 4.93472 4.97246 5.03421 5.06963 5.14937 5.24384 5.41346 5.46464 5.58808 5.66297 5.69384 6.04362 6.15892 6.75705 6.88106 7.32299 7.51927 8.88840 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035830 B = 0.007184 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.279465 B = 3896.781284 C = 4154.291842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.258 3.742 3 H 0.004 0.996 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.260 1.260 12 N -0.600 5.600 13 C 0.081 3.919 14 C 0.498 3.502 15 O -0.611 6.611 16 C -0.133 4.133 17 C -0.116 4.116 18 C -0.095 4.095 19 C -0.142 4.142 20 C -0.121 4.121 21 H 0.067 0.933 22 H 0.018 0.982 23 H 0.047 0.953 24 H 0.264 0.736 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.138 0.862 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -9.474 -13.088 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.156 3.844 3 H 0.022 0.978 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.209 1.209 10 H -0.205 1.205 11 H -0.184 1.184 12 N -0.330 5.330 13 C -0.061 4.061 14 C 0.288 3.712 15 O -0.495 6.495 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.113 4.113 19 C -0.200 4.200 20 C -0.159 4.159 21 H 0.085 0.915 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.077 -8.794 -12.830 16.362 hybrid contribution -0.029 0.322 1.354 1.392 sum 5.048 -8.472 -11.476 15.131 Atomic orbital electron populations 1.21852 0.97172 1.00081 0.99791 1.18526 0.91649 0.92114 0.82128 0.97847 1.21582 1.31757 1.13123 0.91149 0.92035 1.25781 0.95052 0.95709 1.02144 1.70030 1.37300 1.24057 1.24428 0.85434 0.77745 0.79264 0.78448 1.20880 1.20453 1.18373 1.48256 1.48908 1.13437 1.22407 1.21840 1.01212 0.80586 1.02460 1.21446 0.77689 0.86538 0.85545 1.90586 1.60324 1.20014 1.78532 1.22866 0.99123 0.99833 0.93545 1.22941 0.94006 1.00293 0.98144 1.22468 0.95166 0.96380 0.97322 1.21721 0.94824 1.02094 1.01328 1.22907 0.97250 0.97137 0.98603 0.91462 0.96340 0.93384 0.92636 0.91748 0.89088 0.91512 0.84457 0.92365 0.88214 0.86051 0.94446 0.90937 0.91706 0.89913 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.53 8.97 71.98 0.65 -5.88 16 2 C 0.26 13.99 2.64 44.24 0.12 14.11 16 3 H 0.00 0.23 6.90 -2.38 -0.02 0.21 16 4 C -0.54 -29.99 7.99 25.60 0.20 -29.79 16 5 H 0.06 3.31 7.33 -2.91 -0.02 3.29 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -54.27 11.31 21.45 0.24 -54.02 16 8 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 9 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 12 N -0.60 -26.36 2.75 -826.77 -2.28 -28.63 16 13 C 0.08 2.61 9.10 127.77 1.16 3.77 16 14 C 0.50 21.52 7.20 87.66 0.63 22.15 16 15 O -0.61 -32.93 15.23 -3.04 -0.05 -32.97 16 16 C -0.13 -3.82 2.79 -11.02 -0.03 -3.85 16 17 C -0.12 -2.80 6.47 31.12 0.20 -2.60 16 18 C -0.10 -1.86 4.36 -10.25 -0.04 -1.91 16 19 C -0.14 -2.66 9.71 71.98 0.70 -1.96 16 20 C -0.12 -3.24 6.97 31.13 0.22 -3.02 16 21 H 0.07 3.72 6.06 -2.38 -0.01 3.70 16 22 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 23 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 24 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.09 2.24 5.79 -2.39 -0.01 2.23 16 27 H 0.07 2.32 7.02 -2.39 -0.02 2.30 16 28 H 0.14 3.05 7.85 -2.39 -0.02 3.03 16 29 H 0.06 1.75 7.91 -2.39 -0.02 1.73 16 30 H 0.10 1.84 7.68 -2.39 -0.02 1.82 16 31 H 0.12 1.67 8.14 -2.39 -0.02 1.66 16 32 H 0.04 0.84 7.94 -2.39 -0.02 0.82 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.05 7.39 -2.39 -0.02 2.03 16 Total: -1.00 -71.46 288.34 5.24 -66.22 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 1.04 Total: 11.53 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 4.25 Total: -7.83 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -2.03 Total: -82.66 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.05 Total: -32.97 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -71.46 5.24 -66.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610653458.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.857 kcal (2) G-P(sol) polarization free energy of solvation -71.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds