Wall clock time and date at job start Mon Mar 30 2020 02:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 113.19706 * 2 1 4 4 C 1.55779 * 114.08059 * 132.67543 * 2 1 3 5 5 H 1.08999 * 114.12850 * 37.09432 * 4 2 1 6 6 O 1.42902 * 114.12608 * 264.52908 * 4 2 1 7 7 C 1.50009 * 83.86059 * 150.80994 * 4 2 1 8 8 H 1.09007 * 112.50368 * 75.02250 * 7 4 2 9 9 C 1.51207 * 126.16624 * 218.51878 * 7 4 2 10 10 C 1.54086 * 106.19778 * 161.40913 * 9 7 4 11 11 C 1.52496 * 112.59696 * 304.61318 * 10 9 7 12 12 N 1.48183 * 111.98775 * 46.80805 * 11 10 9 13 13 C 1.36937 * 123.20642 * 128.09302 * 12 11 10 14 14 H 1.07999 * 119.99823 * 205.63260 * 13 12 11 15 15 C 1.38812 * 120.00412 * 25.63671 * 13 12 11 16 16 N 1.31617 * 119.99844 * 12.84006 * 15 13 12 17 17 Si 1.86797 * 120.00194 * 192.84859 * 15 13 12 18 18 H 1.48497 * 109.47608 * 89.99278 * 17 15 13 19 19 H 1.48501 * 109.47236 * 209.99435 * 17 15 13 20 20 H 1.48500 * 109.46898 * 329.99473 * 17 15 13 21 21 C 1.45376 * 113.62490 * 308.12698 * 12 11 10 22 22 H 1.09006 * 111.69875 * 300.45777 * 21 12 11 23 23 H 1.09004 * 109.46794 * 306.83492 * 1 2 3 24 24 H 1.08998 * 109.47281 * 66.82839 * 1 2 3 25 25 H 1.09001 * 109.47595 * 186.83263 * 1 2 3 26 26 H 1.08994 * 109.47259 * 200.27911 * 3 2 1 27 27 H 1.09000 * 109.47010 * 320.28263 * 3 2 1 28 28 H 1.09002 * 109.47348 * 80.27529 * 3 2 1 29 29 H 0.96697 * 113.99839 * 186.35524 * 6 4 2 30 30 H 1.08998 * 110.09735 * 42.23648 * 9 7 4 31 31 H 1.09003 * 110.19651 * 280.63299 * 9 7 4 32 32 H 1.08994 * 108.84223 * 65.38768 * 10 9 7 33 33 H 1.09002 * 108.83831 * 183.84650 * 10 9 7 34 34 H 1.08993 * 109.00285 * 167.34974 * 11 10 9 35 35 H 1.09002 * 109.00251 * 286.12690 * 11 10 9 36 36 H 0.96996 * 119.99986 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1327 1.4063 0.0000 4 6 2.1656 -0.9640 1.0456 5 1 1.6230 -1.9003 1.1760 6 8 2.5175 -0.3366 2.2804 7 6 3.2889 -1.0394 0.0543 8 1 3.9068 -0.1414 0.0547 9 6 4.0875 -2.2744 -0.2972 10 6 4.7654 -1.9777 -1.6487 11 6 3.7672 -1.5755 -2.7292 12 7 2.8026 -0.5609 -2.2434 13 6 2.5570 0.6154 -2.9001 14 1 2.1981 1.4745 -2.3529 15 6 2.7693 0.7035 -4.2690 16 7 2.9593 -0.3895 -4.9772 17 14 2.7855 2.3733 -5.1062 18 1 4.1690 2.9129 -5.1078 19 1 2.3084 2.2304 -6.5051 20 1 1.8921 3.3042 -4.3710 21 6 2.1419 -0.9321 -1.0028 22 1 1.5849 -1.8634 -1.1058 23 1 -0.3633 0.6161 0.8225 24 1 -0.3634 0.4044 -0.9447 25 1 -0.3634 -1.0203 0.1223 26 1 3.1618 1.3606 -0.3562 27 1 1.5492 2.0516 -0.6567 28 1 2.1163 1.8087 1.0129 29 1 2.9989 -0.9119 2.8907 30 1 3.4249 -3.1347 -0.3913 31 1 4.8417 -2.4648 0.4664 32 1 5.4822 -1.1680 -1.5128 33 1 5.2999 -2.8689 -1.9776 34 1 4.3111 -1.1660 -3.5802 35 1 3.2187 -2.4602 -3.0526 36 1 3.1081 -0.3280 -5.9337 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693097566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:44 Heat of formation + Delta-G solvation = 11.309214 kcal Electronic energy + Delta-G solvation = -17023.564020 eV Core-core repulsion = 14509.796696 eV Total energy + Delta-G solvation = -2513.767324 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59354 -35.84306 -34.17824 -32.95793 -30.14862 -29.26969 -27.05041 -25.72525 -24.24022 -22.17004 -20.56102 -19.32414 -18.12686 -17.19966 -16.00926 -14.77331 -14.44861 -14.26125 -13.85773 -13.38089 -13.13042 -12.85630 -12.50976 -12.14070 -12.07388 -11.59472 -11.36673 -11.10022 -11.03170 -10.81231 -10.77014 -10.25979 -10.13082 -10.06231 -10.02080 -9.86362 -9.40114 -9.04723 -8.84053 -8.38575 -6.55958 -5.71693 -3.14538 3.39941 3.46798 3.47496 4.41366 4.58565 5.00342 5.08677 5.23016 5.32049 5.45646 5.70979 5.76830 5.90086 5.99270 6.00659 6.15808 6.22010 6.24999 6.38235 6.44301 6.51407 6.60598 6.70437 6.74265 6.79976 6.80620 6.91206 7.13687 7.22945 7.45712 7.72703 7.86525 8.00986 8.46084 9.23175 9.88563 10.53004 11.36322 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.011354 C = 0.009221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.500034 B = 2465.451502 C = 3035.823827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 C -0.112 4.112 4 C 0.094 3.906 5 H 0.076 0.924 6 O -0.560 6.560 7 C -0.193 4.193 8 H 0.098 0.902 9 C -0.090 4.090 10 C -0.136 4.136 11 C 0.164 3.836 12 N -0.569 5.569 13 C -0.239 4.239 14 H 0.077 0.923 15 C -0.003 4.003 16 N -0.909 5.909 17 Si 0.901 3.099 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.148 3.852 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.367 0.633 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.014 0.986 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 -2.425 10.263 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 C -0.169 4.169 4 C 0.035 3.965 5 H 0.094 0.906 6 O -0.365 6.365 7 C -0.213 4.213 8 H 0.116 0.884 9 C -0.128 4.128 10 C -0.175 4.175 11 C 0.039 3.961 12 N -0.291 5.291 13 C -0.368 4.368 14 H 0.095 0.905 15 C -0.201 4.201 16 N -0.555 5.555 17 Si 0.731 3.269 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.039 3.961 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.213 0.787 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.032 0.968 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.382 -1.878 9.723 9.910 hybrid contribution 0.338 0.156 -0.393 0.542 sum -0.044 -1.722 9.329 9.487 Atomic orbital electron populations 1.21714 0.94755 1.00935 1.01637 1.21572 0.94266 0.95665 0.93199 1.21510 1.01583 0.93639 1.00171 1.23169 0.96296 0.95248 0.81779 0.90642 1.86494 1.78217 1.42803 1.28940 1.23671 0.98171 0.99667 0.99830 0.88352 1.21141 0.98166 0.96674 0.96804 1.22096 0.99556 0.99587 0.96276 1.20847 0.89891 0.90985 0.94360 1.43798 1.41747 1.19413 1.24136 1.19357 1.39767 0.88308 0.89369 0.90521 1.25067 1.02025 0.96696 0.96281 1.69960 1.53852 1.25742 1.05953 0.86297 0.77794 0.83958 0.78825 1.21585 1.21845 1.20455 1.21382 0.92560 0.95127 0.87049 0.93601 0.93186 0.91928 0.93256 0.91232 0.92590 0.93301 0.78674 0.93049 0.94048 0.93231 0.93345 0.88774 0.96821 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.20 37.16 0.34 -1.88 16 2 C -0.05 -0.86 1.37 -159.15 -0.22 -1.08 16 3 C -0.11 -2.13 7.08 37.16 0.26 -1.87 16 4 C 0.09 1.53 4.50 -30.63 -0.14 1.39 16 5 H 0.08 1.13 8.10 -51.93 -0.42 0.70 16 6 O -0.56 -8.46 12.89 -35.23 -0.45 -8.92 16 7 C -0.19 -3.51 2.92 -95.83 -0.28 -3.79 16 8 H 0.10 2.01 6.02 -51.93 -0.31 1.70 16 9 C -0.09 -1.55 6.11 -27.07 -0.17 -1.72 16 10 C -0.14 -2.64 5.91 -26.42 -0.16 -2.79 16 11 C 0.16 3.93 5.32 -3.37 -0.02 3.91 16 12 N -0.57 -14.10 2.89 -169.62 -0.49 -14.59 16 13 C -0.24 -6.43 9.10 -15.06 -0.14 -6.57 16 14 H 0.08 2.02 5.24 -52.49 -0.28 1.74 16 15 C 0.00 -0.09 5.13 -17.43 -0.09 -0.18 16 16 N -0.91 -26.39 10.95 55.49 0.61 -25.78 16 17 Si 0.90 21.88 29.57 -169.99 -5.03 16.85 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 C 0.15 3.09 2.99 -72.14 -0.22 2.87 16 22 H 0.05 0.99 8.01 -51.93 -0.42 0.58 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 26 H 0.07 1.44 5.77 -51.93 -0.30 1.14 16 27 H 0.06 1.08 7.03 -51.93 -0.37 0.72 16 28 H 0.05 0.86 7.67 -51.93 -0.40 0.46 16 29 H 0.37 3.89 9.12 45.56 0.42 4.30 16 30 H 0.05 0.86 8.05 -51.93 -0.42 0.44 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 2.53 5.99 -51.93 -0.31 2.22 16 35 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 273.55 15.07 4.12 4.12 Total: -1.00 -29.46 273.55 -6.95 -36.40 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.89 Total: 3.61 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -0.81 Total: -11.70 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.12 Total: -40.37 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.45 Total: -8.92 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.46 -6.95 -36.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693097566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.712 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds