Wall clock time and date at job start Mon Mar 30 2020 02:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 113.19706 * 2 1 4 4 C 1.55779 * 114.08059 * 132.67543 * 2 1 3 5 5 H 1.08999 * 114.12850 * 37.09432 * 4 2 1 6 6 O 1.42902 * 114.12608 * 264.52908 * 4 2 1 7 7 C 1.50009 * 83.86059 * 150.80994 * 4 2 1 8 8 H 1.09007 * 112.50368 * 75.02250 * 7 4 2 9 9 C 1.51207 * 126.16624 * 218.51878 * 7 4 2 10 10 C 1.54086 * 106.19778 * 161.40913 * 9 7 4 11 11 C 1.52496 * 112.59696 * 304.61318 * 10 9 7 12 12 N 1.48183 * 111.98775 * 46.80805 * 11 10 9 13 13 C 1.36937 * 123.20642 * 128.09302 * 12 11 10 14 14 H 1.07999 * 119.99823 * 205.63260 * 13 12 11 15 15 C 1.38812 * 120.00412 * 25.63671 * 13 12 11 16 16 N 1.31617 * 119.99844 * 12.84006 * 15 13 12 17 17 Si 1.86797 * 120.00194 * 192.84859 * 15 13 12 18 18 H 1.48497 * 109.47608 * 89.99278 * 17 15 13 19 19 H 1.48501 * 109.47236 * 209.99435 * 17 15 13 20 20 H 1.48500 * 109.46898 * 329.99473 * 17 15 13 21 21 C 1.45376 * 113.62490 * 308.12698 * 12 11 10 22 22 H 1.09006 * 111.69875 * 300.45777 * 21 12 11 23 23 H 1.09004 * 109.46794 * 306.83492 * 1 2 3 24 24 H 1.08998 * 109.47281 * 66.82839 * 1 2 3 25 25 H 1.09001 * 109.47595 * 186.83263 * 1 2 3 26 26 H 1.08994 * 109.47259 * 200.27911 * 3 2 1 27 27 H 1.09000 * 109.47010 * 320.28263 * 3 2 1 28 28 H 1.09002 * 109.47348 * 80.27529 * 3 2 1 29 29 H 0.96697 * 113.99839 * 186.35524 * 6 4 2 30 30 H 1.08998 * 110.09735 * 42.23648 * 9 7 4 31 31 H 1.09003 * 110.19651 * 280.63299 * 9 7 4 32 32 H 1.08994 * 108.84223 * 65.38768 * 10 9 7 33 33 H 1.09002 * 108.83831 * 183.84650 * 10 9 7 34 34 H 1.08993 * 109.00285 * 167.34974 * 11 10 9 35 35 H 1.09002 * 109.00251 * 286.12690 * 11 10 9 36 36 H 0.96996 * 119.99986 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1327 1.4063 0.0000 4 6 2.1656 -0.9640 1.0456 5 1 1.6230 -1.9003 1.1760 6 8 2.5175 -0.3366 2.2804 7 6 3.2889 -1.0394 0.0543 8 1 3.9068 -0.1414 0.0547 9 6 4.0875 -2.2744 -0.2972 10 6 4.7654 -1.9777 -1.6487 11 6 3.7672 -1.5755 -2.7292 12 7 2.8026 -0.5609 -2.2434 13 6 2.5570 0.6154 -2.9001 14 1 2.1981 1.4745 -2.3529 15 6 2.7693 0.7035 -4.2690 16 7 2.9593 -0.3895 -4.9772 17 14 2.7855 2.3733 -5.1062 18 1 4.1690 2.9129 -5.1078 19 1 2.3084 2.2304 -6.5051 20 1 1.8921 3.3042 -4.3710 21 6 2.1419 -0.9321 -1.0028 22 1 1.5849 -1.8634 -1.1058 23 1 -0.3633 0.6161 0.8225 24 1 -0.3634 0.4044 -0.9447 25 1 -0.3634 -1.0203 0.1223 26 1 3.1618 1.3606 -0.3562 27 1 1.5492 2.0516 -0.6567 28 1 2.1163 1.8087 1.0129 29 1 2.9989 -0.9119 2.8907 30 1 3.4249 -3.1347 -0.3913 31 1 4.8417 -2.4648 0.4664 32 1 5.4822 -1.1680 -1.5128 33 1 5.2999 -2.8689 -1.9776 34 1 4.3111 -1.1660 -3.5802 35 1 3.2187 -2.4602 -3.0526 36 1 3.1081 -0.3280 -5.9337 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693097566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:43 Heat of formation + Delta-G solvation = -8.428783 kcal Electronic energy + Delta-G solvation = -17024.419924 eV Core-core repulsion = 14509.796696 eV Total energy + Delta-G solvation = -2514.623228 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.08642 -37.35871 -35.61630 -34.75888 -32.06410 -30.78385 -28.55770 -27.46228 -25.96023 -23.79085 -22.20269 -20.88634 -19.68179 -18.79343 -17.65852 -16.60170 -15.97978 -15.76786 -15.52828 -14.90116 -14.79084 -14.55757 -14.07625 -13.67965 -13.52251 -13.17747 -12.99273 -12.79362 -12.75493 -12.55006 -12.32706 -12.08485 -11.81152 -11.71539 -11.58215 -11.52268 -10.98240 -10.63675 -10.44240 -10.26291 -8.53303 -7.79416 -5.24533 1.44576 1.45781 1.53817 2.51778 3.14632 3.32308 3.50497 3.67357 3.79170 4.00773 4.14154 4.28463 4.40694 4.50280 4.63743 4.71282 4.71486 4.78427 4.89834 4.98313 5.05192 5.12291 5.17350 5.22887 5.29313 5.33199 5.41385 5.55836 5.61650 5.74376 5.76821 5.83291 6.42039 7.05224 7.16794 7.89638 8.51567 9.25780 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028964 B = 0.011354 C = 0.009221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.500034 B = 2465.451502 C = 3035.823827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.103 4.103 4 C 0.120 3.880 5 H 0.101 0.899 6 O -0.567 6.567 7 C -0.174 4.174 8 H 0.076 0.924 9 C -0.084 4.084 10 C -0.128 4.128 11 C 0.169 3.831 12 N -0.587 5.587 13 C -0.237 4.237 14 H 0.080 0.920 15 C -0.060 4.060 16 N -0.942 5.942 17 Si 0.958 3.042 18 H -0.289 1.289 19 H -0.297 1.297 20 H -0.269 1.269 21 C 0.124 3.876 22 H 0.043 0.957 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.391 0.609 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.057 0.943 35 H -0.009 1.009 36 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 -2.743 12.797 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.160 4.160 4 C 0.061 3.939 5 H 0.119 0.881 6 O -0.375 6.375 7 C -0.194 4.194 8 H 0.094 0.906 9 C -0.121 4.121 10 C -0.167 4.167 11 C 0.044 3.956 12 N -0.309 5.309 13 C -0.367 4.367 14 H 0.097 0.903 15 C -0.254 4.254 16 N -0.590 5.590 17 Si 0.788 3.212 18 H -0.216 1.216 19 H -0.224 1.224 20 H -0.194 1.194 21 C 0.016 3.984 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.241 0.759 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.009 0.991 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.517 -2.201 12.312 12.518 hybrid contribution 0.384 0.246 -1.119 1.208 sum -0.134 -1.955 11.193 11.363 Atomic orbital electron populations 1.21671 0.93450 1.02195 1.01271 1.21691 0.95487 0.95268 0.93491 1.21380 0.99914 0.94209 1.00530 1.22860 0.94408 0.94996 0.81674 0.88112 1.86438 1.78641 1.43804 1.28591 1.23535 0.97399 0.99279 0.99222 0.90618 1.21104 0.98859 0.96349 0.95790 1.21949 0.98219 1.00124 0.96424 1.20687 0.90143 0.89693 0.95082 1.44003 1.42809 1.18953 1.25147 1.19674 1.38059 0.89416 0.89570 0.90292 1.25758 1.03033 0.99550 0.97073 1.70128 1.55817 1.27432 1.05619 0.85374 0.77676 0.80675 0.77497 1.21583 1.22405 1.19356 1.21660 0.94672 0.95925 0.86129 0.93977 0.91399 0.93961 0.91692 0.93525 0.93820 0.91808 0.75881 0.92018 0.90807 0.93958 0.91262 0.92472 0.99054 0.94520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.20 71.98 0.66 -3.37 16 2 C -0.06 -2.06 1.37 -55.19 -0.08 -2.14 16 3 C -0.10 -3.82 7.08 71.98 0.51 -3.31 16 4 C 0.12 3.45 4.50 28.07 0.13 3.58 16 5 H 0.10 2.49 8.10 -2.39 -0.02 2.47 16 6 O -0.57 -14.62 12.89 -148.98 -1.92 -16.54 16 7 C -0.17 -5.92 2.92 -14.17 -0.04 -5.96 16 8 H 0.08 2.97 6.02 -2.38 -0.01 2.96 16 9 C -0.08 -2.61 6.11 30.38 0.19 -2.42 16 10 C -0.13 -4.84 5.91 30.79 0.18 -4.66 16 11 C 0.17 8.30 5.32 85.89 0.46 8.75 16 12 N -0.59 -29.53 2.89 -690.55 -1.99 -31.52 16 13 C -0.24 -13.05 9.10 84.03 0.76 -12.28 16 14 H 0.08 4.22 5.24 -2.91 -0.02 4.21 16 15 C -0.06 -3.43 5.13 84.86 0.44 -2.99 16 16 N -0.94 -56.78 10.95 21.65 0.24 -56.54 16 17 Si 0.96 46.07 29.57 68.60 2.03 48.10 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 C 0.12 5.06 2.99 42.86 0.13 5.18 16 22 H 0.04 1.77 8.01 -2.38 -0.02 1.76 16 23 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 26 H 0.05 1.92 5.77 -2.39 -0.01 1.90 16 27 H 0.04 1.67 7.03 -2.39 -0.02 1.65 16 28 H 0.06 2.13 7.67 -2.39 -0.02 2.11 16 29 H 0.39 6.27 9.12 -74.06 -0.68 5.59 16 30 H 0.06 1.84 8.05 -2.39 -0.02 1.82 16 31 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.06 3.21 5.99 -2.39 -0.01 3.20 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -64.80 273.55 2.08 -62.72 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.39 Total: 13.40 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 3.33 Total: -19.62 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -1.76 Total: -88.06 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.92 Total: -16.54 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -64.80 2.08 -62.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693097566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.296 kcal (2) G-P(sol) polarization free energy of solvation -64.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds