Wall clock time and date at job start Mon Mar 30 2020 02:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 112.95042 * 2 1 4 4 C 1.54309 * 113.66108 * 228.59683 * 2 1 3 5 5 H 1.09006 * 114.80507 * 104.26815 * 4 2 1 6 6 N 1.46812 * 111.33881 * 334.15508 * 4 2 1 7 7 C 1.46815 * 110.97932 * 214.31353 * 6 4 2 8 8 C 1.52645 * 108.92890 * 65.25083 * 7 6 4 9 9 C 1.51824 * 110.80428 * 297.12244 * 8 7 6 10 10 C 1.50813 * 113.74358 * 44.72654 * 9 8 7 11 11 H 1.08995 * 110.97622 * 199.47167 * 10 9 8 12 12 C 1.53292 * 115.36107 * 71.21169 * 10 9 8 13 13 O 1.42898 * 113.73250 * 328.17918 * 12 10 9 14 14 C 1.50703 * 113.72838 * 99.34585 * 12 10 9 15 15 H 1.08002 * 119.99767 * 359.36677 * 14 12 10 16 16 C 1.37870 * 119.99728 * 179.35726 * 14 12 10 17 17 N 1.31518 * 120.00319 * 1.01003 * 16 14 12 18 18 Si 1.86807 * 120.00068 * 181.00167 * 16 14 12 19 19 H 1.48505 * 109.47195 * 270.00780 * 18 16 14 20 20 H 1.48501 * 109.46773 * 30.00557 * 18 16 14 21 21 H 1.48493 * 109.47166 * 150.00129 * 18 16 14 22 22 H 1.09007 * 109.47447 * 296.77200 * 1 2 3 23 23 H 1.09005 * 109.46963 * 56.76622 * 1 2 3 24 24 H 1.08996 * 109.47408 * 176.77114 * 1 2 3 25 25 H 1.08992 * 109.47294 * 191.39384 * 3 2 1 26 26 H 1.09003 * 109.46799 * 311.39752 * 3 2 1 27 27 H 1.09008 * 109.47265 * 71.39184 * 3 2 1 28 28 H 1.00900 * 111.00139 * 338.24432 * 6 4 2 29 29 H 1.08998 * 109.56366 * 185.08701 * 7 6 4 30 30 H 1.09002 * 109.55647 * 305.41909 * 7 6 4 31 31 H 1.08994 * 109.21038 * 57.46731 * 8 7 6 32 32 H 1.09003 * 109.20692 * 176.78530 * 8 7 6 33 33 H 1.08997 * 108.62916 * 283.63163 * 9 8 7 34 34 H 1.09001 * 108.63082 * 165.83022 * 9 8 7 35 35 H 0.96703 * 114.00185 * 76.89478 * 13 12 10 36 36 H 0.96999 * 119.99527 * 354.78493 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1266 1.4089 0.0000 4 6 2.1493 -0.9347 -1.0601 5 1 2.5562 -0.4277 -1.9351 6 7 1.2364 -2.0321 -1.4034 7 6 1.9810 -3.2630 -1.6966 8 6 2.6867 -3.7295 -0.4260 9 6 3.7051 -2.7016 0.0336 10 6 3.1955 -1.2826 -0.0048 11 1 4.0213 -0.5713 -0.0053 12 6 2.1476 -0.9323 1.0578 13 8 1.3077 -2.0299 1.4211 14 6 2.7132 -0.2057 2.2508 15 1 3.7702 0.0104 2.3002 16 6 1.8812 0.1834 3.2790 17 7 0.5973 -0.0971 3.2280 18 14 2.5775 1.1088 4.7448 19 1 3.0015 0.1391 5.7865 20 1 3.7481 1.9133 4.3115 21 1 1.5365 2.0098 5.3013 22 1 -0.3634 0.4629 0.9175 23 1 -0.3633 0.5632 -0.8596 24 1 -0.3634 -1.0260 -0.0579 25 1 3.1958 1.3506 -0.2030 26 1 1.6424 2.0084 -0.7709 27 1 1.9663 1.8714 0.9740 28 1 0.5615 -2.1842 -0.6689 29 1 1.2905 -4.0354 -2.0351 30 1 2.7201 -3.0661 -2.4732 31 1 1.9472 -3.8785 0.3608 32 1 3.1942 -4.6737 -0.6237 33 1 4.5848 -2.7729 -0.6059 34 1 4.0012 -2.9376 1.0557 35 1 1.7294 -2.6692 2.0115 36 1 0.2222 -0.5099 2.4344 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693740872.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:35 Heat of formation + Delta-G solvation = -33.242018 kcal Electronic energy + Delta-G solvation = -17569.818406 eV Core-core repulsion = 15054.119195 eV Total energy + Delta-G solvation = -2515.699210 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50201 -35.31886 -33.90505 -31.99565 -31.50412 -29.12999 -26.77418 -25.49380 -23.93881 -22.39480 -21.40206 -18.81810 -18.00424 -17.13457 -15.35142 -15.00636 -14.24815 -14.18973 -13.86863 -13.70134 -13.17434 -12.81798 -12.36193 -11.93727 -11.76602 -11.50137 -11.36898 -11.15228 -10.92149 -10.78756 -10.60545 -10.43377 -10.31172 -10.10873 -10.04042 -9.70500 -9.32743 -8.64456 -8.35258 -8.00601 -7.48401 -6.23218 -4.10228 3.40631 3.43783 3.59328 4.51444 4.84870 5.16091 5.32677 5.35735 5.45988 5.55356 5.59736 5.65403 5.96177 6.06094 6.12424 6.21747 6.30077 6.40433 6.48305 6.53320 6.55907 6.62791 6.75407 6.81296 6.86852 6.87701 7.01800 7.27321 7.36394 7.55802 7.77883 7.99202 8.19588 8.39891 8.90437 9.09410 9.70866 11.13373 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034988 B = 0.011816 C = 0.010831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.081013 B = 2369.193110 C = 2584.477874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C -0.101 4.101 4 C 0.075 3.925 5 H 0.069 0.931 6 N -0.670 5.670 7 C 0.063 3.937 8 C -0.152 4.152 9 C -0.093 4.093 10 C -0.164 4.164 11 H 0.077 0.923 12 C 0.242 3.758 13 O -0.559 6.559 14 C -0.624 4.624 15 H 0.049 0.951 16 C 0.039 3.961 17 N -0.898 5.898 18 Si 1.058 2.942 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.285 1.285 22 H 0.062 0.938 23 H 0.033 0.967 24 H 0.056 0.944 25 H 0.044 0.956 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.356 0.644 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.055 0.945 35 H 0.361 0.639 36 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 -3.170 -6.105 7.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.073 4.073 3 C -0.158 4.158 4 C -0.036 4.036 5 H 0.087 0.913 6 N -0.304 5.304 7 C -0.067 4.067 8 C -0.191 4.191 9 C -0.131 4.131 10 C -0.184 4.184 11 H 0.096 0.904 12 C 0.202 3.798 13 O -0.364 6.364 14 C -0.662 4.662 15 H 0.067 0.933 16 C -0.171 4.171 17 N -0.535 5.535 18 Si 0.887 3.113 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.211 1.211 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.180 0.820 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.207 0.793 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.016 -2.044 -5.689 6.373 hybrid contribution 1.430 -1.171 -0.189 1.858 sum 3.446 -3.216 -5.878 7.534 Atomic orbital electron populations 1.21549 0.95054 1.00956 1.00383 1.22319 0.94917 0.94848 0.95240 1.21274 0.98891 0.94369 1.01295 1.22625 0.93193 0.93054 0.94692 0.91258 1.60991 1.16132 1.04991 1.48289 1.21739 0.96629 0.92279 0.96091 1.21905 0.99645 0.97789 0.99781 1.20438 0.97258 0.94924 1.00442 1.22966 0.98928 0.95643 1.00890 0.90441 1.19754 0.85216 0.83947 0.90847 1.86169 1.44298 1.37142 1.68754 1.22115 0.95832 1.41845 1.06359 0.93309 1.25560 0.95059 0.95865 1.00597 1.70584 1.12379 1.38023 1.32530 0.83729 0.75130 0.76617 0.75823 1.21677 1.21628 1.21116 0.91892 0.94833 0.92520 0.93658 0.94734 0.91192 0.81962 0.91784 0.92214 0.90992 0.93195 0.94190 0.92594 0.79260 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 7.75 37.16 0.29 -2.32 16 2 C -0.07 -1.55 1.26 -153.37 -0.19 -1.74 16 3 C -0.10 -2.10 8.30 37.16 0.31 -1.79 16 4 C 0.07 1.47 4.15 -67.27 -0.28 1.19 16 5 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 6 N -0.67 -12.38 6.34 -106.53 -0.68 -13.05 16 7 C 0.06 1.01 6.52 -4.05 -0.03 0.98 16 8 C -0.15 -2.45 5.52 -27.51 -0.15 -2.60 16 9 C -0.09 -1.67 5.25 -28.43 -0.15 -1.82 16 10 C -0.16 -3.33 3.03 -91.80 -0.28 -3.61 16 11 H 0.08 1.65 7.22 -51.93 -0.37 1.27 16 12 C 0.24 5.50 0.69 -91.13 -0.06 5.44 16 13 O -0.56 -12.57 6.63 -35.23 -0.23 -12.80 16 14 C -0.62 -16.17 6.97 -34.44 -0.24 -16.41 16 15 H 0.05 1.30 7.81 -52.49 -0.41 0.89 16 16 C 0.04 1.03 5.36 -17.82 -0.10 0.94 16 17 N -0.90 -25.51 13.35 55.43 0.74 -24.77 16 18 Si 1.06 24.33 29.90 -169.99 -5.08 19.24 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H 0.06 1.49 6.69 -51.92 -0.35 1.14 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.20 5.31 -51.93 -0.28 0.93 16 25 H 0.04 0.90 7.08 -51.93 -0.37 0.53 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.61 7.39 -51.92 -0.38 1.22 16 28 H 0.36 7.03 4.41 -39.29 -0.17 6.86 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 31 H 0.07 1.23 6.11 -51.93 -0.32 0.91 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.36 7.84 8.33 45.56 0.38 8.22 16 36 H 0.30 8.25 3.90 -40.82 -0.16 8.09 16 LS Contribution 261.71 15.07 3.94 3.94 Total: -1.00 -27.17 261.71 -6.79 -33.97 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -4.61 Total: 15.21 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -0.88 Total: -21.74 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.06 Total: -37.82 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.23 Total: -12.80 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.08 Total: 19.24 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.17 -6.79 -33.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693740872.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.726 kcal (2) G-P(sol) polarization free energy of solvation -27.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds