Wall clock time and date at job start Mon Mar 30 2020 02:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 112.95042 * 2 1 4 4 C 1.54309 * 113.66108 * 228.59683 * 2 1 3 5 5 H 1.09006 * 114.80507 * 104.26815 * 4 2 1 6 6 N 1.46812 * 111.33881 * 334.15508 * 4 2 1 7 7 C 1.46815 * 110.97932 * 214.31353 * 6 4 2 8 8 C 1.52645 * 108.92890 * 65.25083 * 7 6 4 9 9 C 1.51824 * 110.80428 * 297.12244 * 8 7 6 10 10 C 1.50813 * 113.74358 * 44.72654 * 9 8 7 11 11 H 1.08995 * 110.97622 * 199.47167 * 10 9 8 12 12 C 1.53292 * 115.36107 * 71.21169 * 10 9 8 13 13 O 1.42898 * 113.73250 * 328.17918 * 12 10 9 14 14 C 1.50703 * 113.72838 * 99.34585 * 12 10 9 15 15 H 1.08002 * 119.99767 * 359.36677 * 14 12 10 16 16 C 1.37870 * 119.99728 * 179.35726 * 14 12 10 17 17 N 1.31518 * 120.00319 * 1.01003 * 16 14 12 18 18 Si 1.86807 * 120.00068 * 181.00167 * 16 14 12 19 19 H 1.48505 * 109.47195 * 270.00780 * 18 16 14 20 20 H 1.48501 * 109.46773 * 30.00557 * 18 16 14 21 21 H 1.48493 * 109.47166 * 150.00129 * 18 16 14 22 22 H 1.09007 * 109.47447 * 296.77200 * 1 2 3 23 23 H 1.09005 * 109.46963 * 56.76622 * 1 2 3 24 24 H 1.08996 * 109.47408 * 176.77114 * 1 2 3 25 25 H 1.08992 * 109.47294 * 191.39384 * 3 2 1 26 26 H 1.09003 * 109.46799 * 311.39752 * 3 2 1 27 27 H 1.09008 * 109.47265 * 71.39184 * 3 2 1 28 28 H 1.00900 * 111.00139 * 338.24432 * 6 4 2 29 29 H 1.08998 * 109.56366 * 185.08701 * 7 6 4 30 30 H 1.09002 * 109.55647 * 305.41909 * 7 6 4 31 31 H 1.08994 * 109.21038 * 57.46731 * 8 7 6 32 32 H 1.09003 * 109.20692 * 176.78530 * 8 7 6 33 33 H 1.08997 * 108.62916 * 283.63163 * 9 8 7 34 34 H 1.09001 * 108.63082 * 165.83022 * 9 8 7 35 35 H 0.96703 * 114.00185 * 76.89478 * 13 12 10 36 36 H 0.96999 * 119.99527 * 354.78493 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1266 1.4089 0.0000 4 6 2.1493 -0.9347 -1.0601 5 1 2.5562 -0.4277 -1.9351 6 7 1.2364 -2.0321 -1.4034 7 6 1.9810 -3.2630 -1.6966 8 6 2.6867 -3.7295 -0.4260 9 6 3.7051 -2.7016 0.0336 10 6 3.1955 -1.2826 -0.0048 11 1 4.0213 -0.5713 -0.0053 12 6 2.1476 -0.9323 1.0578 13 8 1.3077 -2.0299 1.4211 14 6 2.7132 -0.2057 2.2508 15 1 3.7702 0.0104 2.3002 16 6 1.8812 0.1834 3.2790 17 7 0.5973 -0.0971 3.2280 18 14 2.5775 1.1088 4.7448 19 1 3.0015 0.1391 5.7865 20 1 3.7481 1.9133 4.3115 21 1 1.5365 2.0098 5.3013 22 1 -0.3634 0.4629 0.9175 23 1 -0.3633 0.5632 -0.8596 24 1 -0.3634 -1.0260 -0.0579 25 1 3.1958 1.3506 -0.2030 26 1 1.6424 2.0084 -0.7709 27 1 1.9663 1.8714 0.9740 28 1 0.5615 -2.1842 -0.6689 29 1 1.2905 -4.0354 -2.0351 30 1 2.7201 -3.0661 -2.4732 31 1 1.9472 -3.8785 0.3608 32 1 3.1942 -4.6737 -0.6237 33 1 4.5848 -2.7729 -0.6059 34 1 4.0012 -2.9376 1.0557 35 1 1.7294 -2.6692 2.0115 36 1 0.2222 -0.5099 2.4344 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693740872.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:34 Heat of formation + Delta-G solvation = -51.024236 kcal Electronic energy + Delta-G solvation = -17570.589500 eV Core-core repulsion = 15054.119195 eV Total energy + Delta-G solvation = -2516.470305 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.12721 -36.88779 -35.60126 -33.97560 -33.01622 -30.70612 -28.47744 -27.34484 -25.52903 -23.97441 -23.01943 -20.32798 -19.83707 -18.90229 -17.02348 -16.57086 -15.86663 -15.76599 -15.63462 -15.35154 -14.73716 -14.51845 -14.02276 -13.62232 -13.20165 -13.16429 -13.14286 -12.85771 -12.62834 -12.43290 -12.23027 -12.00432 -11.94690 -11.87435 -11.71467 -11.26117 -11.00352 -10.57629 -10.19441 -9.75075 -9.04180 -8.31229 -6.19940 1.53166 1.59052 1.76234 2.60663 3.28756 3.33331 3.54916 3.84891 3.90108 4.08331 4.15541 4.25846 4.42082 4.54129 4.62691 4.72190 4.81088 4.85451 4.91986 5.00315 5.02491 5.11574 5.15836 5.19503 5.27188 5.34937 5.46340 5.53765 5.68672 5.86892 6.01160 6.31186 6.33814 6.65284 6.85241 7.24282 7.67264 9.04155 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034988 B = 0.011816 C = 0.010831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.081013 B = 2369.193110 C = 2584.477874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.097 4.097 4 C 0.089 3.911 5 H 0.080 0.920 6 N -0.671 5.671 7 C 0.061 3.939 8 C -0.146 4.146 9 C -0.092 4.092 10 C -0.159 4.159 11 H 0.064 0.936 12 C 0.228 3.772 13 O -0.557 6.557 14 C -0.626 4.626 15 H 0.034 0.966 16 C -0.002 4.002 17 N -0.928 5.928 18 Si 1.095 2.905 19 H -0.281 1.281 20 H -0.279 1.279 21 H -0.290 1.290 22 H 0.032 0.968 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.039 0.961 28 H 0.348 0.652 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.360 0.640 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.604 -3.881 -7.402 9.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.155 4.155 4 C -0.021 4.021 5 H 0.098 0.902 6 N -0.304 5.304 7 C -0.068 4.068 8 C -0.185 4.185 9 C -0.130 4.130 10 C -0.179 4.179 11 H 0.082 0.918 12 C 0.189 3.811 13 O -0.362 6.362 14 C -0.664 4.664 15 H 0.052 0.948 16 C -0.206 4.206 17 N -0.566 5.566 18 Si 0.921 3.079 19 H -0.207 1.207 20 H -0.204 1.204 21 H -0.216 1.216 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.171 0.829 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.207 0.793 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.698 -2.767 -7.002 7.998 hybrid contribution 1.251 -0.961 0.186 1.589 sum 3.949 -3.728 -6.816 8.715 Atomic orbital electron populations 1.21431 0.95150 1.00853 0.99555 1.22398 0.94931 0.95240 0.95675 1.21222 0.99494 0.94334 1.00405 1.22492 0.92514 0.92890 0.94251 0.90215 1.61029 1.16000 1.05865 1.47526 1.21878 0.97154 0.91649 0.96165 1.21843 0.98983 0.98300 0.99350 1.20422 0.98429 0.93880 1.00222 1.22868 0.98127 0.96997 0.99957 0.91768 1.19828 0.86601 0.84227 0.90460 1.86173 1.44325 1.36976 1.68739 1.22369 0.95019 1.41505 1.07547 0.94788 1.26563 0.94910 0.96215 1.02935 1.70665 1.13218 1.39950 1.32813 0.83211 0.74830 0.75971 0.73900 1.20686 1.20447 1.21560 0.94856 0.93027 0.92603 0.93190 0.92357 0.94143 0.82887 0.89713 0.91179 0.92294 0.90559 0.92515 0.93892 0.79313 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.75 7.75 71.98 0.56 -4.20 16 2 C -0.08 -3.44 1.26 -51.45 -0.06 -3.50 16 3 C -0.10 -3.98 8.30 71.98 0.60 -3.38 16 4 C 0.09 3.33 4.15 45.25 0.19 3.52 16 5 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 6 N -0.67 -23.15 6.34 -490.94 -3.11 -26.26 16 7 C 0.06 1.75 6.52 86.20 0.56 2.31 16 8 C -0.15 -4.29 5.52 30.09 0.17 -4.12 16 9 C -0.09 -3.11 5.25 29.50 0.15 -2.95 16 10 C -0.16 -6.26 3.03 -11.56 -0.04 -6.29 16 11 H 0.06 2.67 7.22 -2.39 -0.02 2.66 16 12 C 0.23 10.35 0.69 -11.12 -0.01 10.34 16 13 O -0.56 -25.08 6.63 -148.98 -0.99 -26.06 16 14 C -0.63 -32.78 6.97 25.60 0.18 -32.61 16 15 H 0.03 1.83 7.81 -2.91 -0.02 1.81 16 16 C 0.00 -0.11 5.36 84.65 0.45 0.35 16 17 N -0.93 -53.55 13.35 21.45 0.29 -53.27 16 18 Si 1.10 49.44 29.90 68.60 2.05 51.49 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 22 H 0.03 1.59 6.69 -2.38 -0.02 1.57 16 23 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 24 H 0.06 2.34 5.31 -2.39 -0.01 2.33 16 25 H 0.05 1.95 7.08 -2.39 -0.02 1.93 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 1.87 7.39 -2.38 -0.02 1.85 16 28 H 0.35 13.15 4.41 -89.69 -0.40 12.76 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 1.90 8.13 -2.39 -0.02 1.88 16 31 H 0.06 1.90 6.11 -2.39 -0.01 1.89 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.36 15.80 8.33 -74.06 -0.62 15.18 16 36 H 0.29 16.53 3.90 -92.71 -0.36 16.17 16 Total: -1.00 -57.27 261.71 1.46 -55.80 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: 0.47 Total: 38.83 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 2.75 Total: -40.54 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: -2.83 Total: -79.53 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.99 Total: -26.06 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.05 Total: 51.49 kcal Total: -57.27 1.46 -55.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693740872.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.781 kcal (2) G-P(sol) polarization free energy of solvation -57.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds